Wall clock time and date at job start Wed Apr 1 2020 04:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47012 * 2 1 4 4 H 1.09002 * 109.47017 * 305.00433 * 3 2 1 5 5 C 1.50700 * 109.46969 * 185.00332 * 3 2 1 6 6 H 1.08000 * 120.00050 * 239.99796 * 5 3 2 7 7 C 1.37872 * 120.00088 * 60.00355 * 5 3 2 8 8 N 1.31520 * 120.00209 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00128 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47291 * 89.99909 * 9 7 5 11 11 H 1.48499 * 109.46985 * 210.00033 * 9 7 5 12 12 H 1.48503 * 109.46649 * 329.99746 * 9 7 5 13 13 N 1.46501 * 109.47132 * 65.00310 * 3 2 1 14 14 C 1.34778 * 119.99876 * 274.99884 * 13 3 2 15 15 O 1.21356 * 120.00056 * 0.02562 * 14 13 3 16 16 C 1.49355 * 119.99744 * 179.97438 * 14 13 3 17 17 O 1.21359 * 119.99856 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99744 * 179.97438 * 16 14 13 19 19 C 1.39157 * 119.99726 * 174.91568 * 18 16 14 20 20 C 1.39183 * 119.57066 * 185.06916 * 19 18 16 21 21 C 1.38115 * 119.21558 * 179.97438 * 20 19 18 22 22 C 1.39898 * 118.40067 * 0.02562 * 21 20 19 23 23 C 1.48417 * 120.46351 * 179.97438 * 22 21 20 24 24 N 1.34069 * 126.67202 * 359.68876 * 23 22 21 25 25 N 1.28992 * 107.26341 * 179.83387 * 24 23 22 26 26 N 1.28727 * 108.94831 * 0.43496 * 25 24 23 27 27 H 0.97005 * 125.33836 * 179.69376 * 26 25 24 28 28 N 1.28872 * 109.32632 * 359.72004 * 26 25 24 29 29 C 1.39205 * 119.08157 * 359.97438 * 22 21 20 30 30 N 1.31758 * 120.68729 * 359.74818 * 29 22 21 31 31 H 1.09002 * 109.46851 * 299.99486 * 1 2 3 32 32 H 1.08999 * 109.47679 * 59.99768 * 1 2 3 33 33 H 1.09005 * 109.47230 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46851 * 240.00513 * 2 1 3 35 35 H 1.08999 * 109.47679 * 120.00232 * 2 1 3 36 36 H 0.97000 * 119.99790 * 179.97438 * 8 7 5 37 37 H 0.96996 * 119.99966 * 94.99836 * 13 3 2 38 38 H 0.97000 * 120.00364 * 354.91881 * 18 16 14 39 39 H 1.07999 * 120.38752 * 359.95989 * 20 19 18 40 40 H 1.08007 * 120.80350 * 179.97438 * 21 20 19 41 41 H 1.08007 * 119.65749 * 180.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1431 0.8785 -1.2281 8 7 3.4060 0.3368 -2.1730 9 14 6.0048 0.8814 -1.3820 10 1 6.5548 -0.3500 -0.7606 11 1 6.3827 0.9226 -2.8176 12 1 6.5568 2.0740 -0.6904 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3402 2.6319 0.4339 16 6 0.0398 3.3316 2.6435 17 8 0.8150 3.3637 3.5767 18 7 -1.1773 3.8990 2.7585 19 6 -1.5862 4.4269 3.9793 20 6 -2.8825 4.9148 4.1171 21 6 -3.2808 5.4367 5.3322 22 6 -2.3578 5.4545 6.3834 23 6 -2.7370 6.0053 7.7084 24 7 -3.9243 6.5267 8.0488 25 7 -3.8445 6.8856 9.2852 26 7 -2.6632 6.6198 9.7222 27 1 -2.3446 6.7967 10.6211 28 7 -1.9701 6.0824 8.7780 29 6 -1.0788 4.9483 6.1695 30 7 -0.7389 4.4537 4.9965 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.8291 -0.0609 -2.9500 37 1 2.2719 2.1231 1.9978 38 1 -1.7682 3.9393 1.9903 39 1 -3.5686 4.8857 3.2835 40 1 -4.2804 5.8226 5.4675 41 1 -0.3590 4.9571 6.9747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604014318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:01 Heat of formation + Delta-G solvation = 82.942952 kcal Electronic energy + Delta-G solvation = -28495.966064 eV Core-core repulsion = 24220.946752 eV Total energy + Delta-G solvation = -4275.019312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.45442 -42.23104 -41.03200 -39.53684 -37.23028 -36.44464 -35.37216 -34.54659 -34.27275 -33.36190 -32.79582 -31.10242 -29.17894 -26.95413 -26.06412 -25.33278 -24.78479 -24.15423 -22.98098 -21.85828 -21.18919 -20.27582 -20.10139 -18.98555 -18.18728 -18.13895 -17.63224 -17.42675 -17.21917 -17.02326 -16.61520 -16.02808 -15.75650 -15.50893 -15.05697 -14.95301 -14.77710 -14.60622 -14.24000 -13.83160 -13.72652 -13.47838 -13.29226 -13.18859 -12.96758 -12.73898 -12.72735 -12.63150 -12.34151 -12.18440 -12.14122 -12.09958 -11.59087 -11.57707 -11.09004 -10.93276 -10.85884 -10.55384 -10.19812 -9.82383 -9.34355 -8.17533 -6.34096 -0.59816 0.11932 0.23238 0.47035 1.20029 1.28054 1.42857 1.45849 1.47134 1.57126 2.20319 2.38346 2.54212 2.68563 2.80587 3.11012 3.12212 3.35592 3.58267 3.82673 3.84331 4.13996 4.18177 4.42720 4.50872 4.57125 4.65802 4.73376 4.80759 5.00608 5.04188 5.07760 5.24096 5.37598 5.41188 5.49949 5.57950 5.61506 5.69044 5.78914 5.86802 6.12992 6.43054 6.68273 6.77754 7.01304 7.11567 7.11910 7.37630 8.87449 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.001922 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.178678 B =14562.226573 C =15316.792821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.018 0.982 5 C -0.553 4.553 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.671 5.671 14 C 0.497 3.503 15 O -0.544 6.544 16 C 0.508 3.492 17 O -0.473 6.473 18 N -0.625 5.625 19 C 0.357 3.643 20 C -0.183 4.183 21 C 0.002 3.998 22 C -0.105 4.105 23 C 0.221 3.779 24 N -0.288 5.288 25 N -0.055 5.055 26 N -0.200 5.200 27 H 0.495 0.505 28 N -0.298 5.298 29 C 0.170 3.830 30 N -0.514 5.514 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.267 0.733 37 H 0.408 0.592 38 H 0.442 0.558 39 H 0.184 0.816 40 H 0.176 0.824 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.834 11.512 20.545 27.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.035 0.965 5 C -0.591 4.591 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.546 5.546 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.321 5.321 14 C 0.277 3.723 15 O -0.423 6.423 16 C 0.288 3.712 17 O -0.341 6.341 18 N -0.275 5.275 19 C 0.126 3.874 20 C -0.205 4.205 21 C -0.026 4.026 22 C -0.113 4.113 23 C -0.060 4.060 24 N -0.160 5.160 25 N -0.050 5.050 26 N -0.051 5.051 27 H 0.354 0.646 28 N -0.150 5.150 29 C 0.009 3.991 30 N -0.228 5.228 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.243 0.757 38 H 0.284 0.716 39 H 0.201 0.799 40 H 0.194 0.806 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -14.301 11.289 20.592 27.496 hybrid contribution 0.831 0.084 -0.006 0.835 sum -13.470 11.373 20.586 27.103 Atomic orbital electron populations 1.21709 0.96437 0.99694 1.00511 1.21825 0.94276 0.98550 1.01637 1.18648 0.94029 0.89597 0.80324 0.96458 1.21515 0.91304 1.39449 1.06833 0.91494 1.25665 1.03072 0.94251 0.94939 1.70007 1.36908 1.37962 1.09757 0.85410 0.79380 0.78720 0.77229 1.19817 1.20906 1.19349 1.46245 1.14381 1.53097 1.18355 1.19990 0.83691 0.80823 0.87822 1.90728 1.51354 1.59882 1.40328 1.20491 0.82724 0.79658 0.88345 1.90836 1.49792 1.53975 1.39540 1.43178 1.17315 1.55106 1.11864 1.18930 0.90664 0.92103 0.85695 1.21757 0.94311 1.03493 1.00953 1.21654 1.00035 0.91480 0.89409 1.18245 0.96619 1.06936 0.89451 1.23394 0.87554 1.00505 0.94500 1.76061 1.20971 1.15140 1.03856 1.78857 1.04247 1.16329 1.05524 1.47786 1.06052 1.36346 1.14879 0.64635 1.74938 1.24095 1.18102 0.97904 1.22852 0.93691 0.89446 0.93118 1.67660 1.35702 1.19062 1.00372 0.94063 0.94345 0.93303 0.90286 0.94323 0.92387 0.75711 0.71627 0.79859 0.80646 0.80953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.51 71.98 0.61 -4.66 16 2 C -0.12 -5.88 5.45 30.59 0.17 -5.71 16 3 C 0.28 13.71 2.24 44.25 0.10 13.81 16 4 H 0.02 1.00 7.58 -2.39 -0.02 0.98 16 5 C -0.55 -28.97 8.73 25.60 0.22 -28.75 16 6 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 7 C 0.02 1.14 5.29 84.65 0.45 1.59 16 8 N -0.91 -50.10 11.29 21.45 0.24 -49.86 16 9 Si 0.97 41.78 29.54 68.60 2.03 43.81 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 13 N -0.67 -28.27 5.01 -447.52 -2.24 -30.52 16 14 C 0.50 19.05 6.46 87.24 0.56 19.61 16 15 O -0.54 -22.23 13.62 -3.27 -0.04 -22.27 16 16 C 0.51 16.81 7.84 87.24 0.68 17.49 16 17 O -0.47 -17.63 14.72 -3.28 -0.05 -17.68 16 18 N -0.63 -15.69 5.37 -309.76 -1.66 -17.35 16 19 C 0.36 8.29 7.42 133.02 0.99 9.28 16 20 C -0.18 -2.68 9.92 22.47 0.22 -2.46 16 21 C 0.00 0.02 9.83 22.64 0.22 0.25 16 22 C -0.11 -1.89 5.89 -19.93 -0.12 -2.01 16 23 C 0.22 3.91 7.95 137.35 1.09 5.00 16 24 N -0.29 -5.19 12.30 -52.19 -0.64 -5.84 16 25 N -0.05 -0.80 13.47 37.02 0.50 -0.30 16 26 N -0.20 -1.92 7.90 37.02 0.29 -1.62 16 27 H 0.49 -0.11 8.96 -347.52 -3.12 -3.22 16 28 N -0.30 -4.50 12.10 -52.14 -0.63 -5.13 16 29 C 0.17 3.68 10.86 84.94 0.92 4.61 16 30 N -0.51 -14.06 7.85 -192.29 -1.51 -15.57 16 31 H 0.04 1.65 5.64 -2.39 -0.01 1.63 16 32 H 0.04 1.69 7.85 -2.39 -0.02 1.67 16 33 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.08 4.17 5.95 -2.39 -0.01 4.15 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.41 16.24 8.01 -92.71 -0.74 15.50 16 38 H 0.44 8.76 8.17 -92.71 -0.76 8.01 16 39 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 40 H 0.18 1.65 7.96 -2.91 -0.02 1.63 16 41 H 0.17 3.33 7.89 -2.91 -0.02 3.31 16 Total: -1.00 -70.99 359.29 -1.06 -72.04 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -3.46 Total: 22.26 kcal Atomic # 6 Polarization: 21.92 SS G_CDS: 6.13 Total: 28.05 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -5.66 Total: -126.20 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.09 Total: -39.95 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -70.99 -1.06 -72.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.988 kcal (2) G-P(sol) polarization free energy of solvation -70.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds