Wall clock time and date at job start Wed Apr 1 2020 04:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 H 1.09000 * 109.47328 * 54.99639 * 3 2 1 5 5 C 1.50697 * 109.47326 * 175.00112 * 3 2 1 6 6 H 1.08003 * 120.00256 * 119.99723 * 5 3 2 7 7 C 1.37879 * 119.99763 * 299.99662 * 5 3 2 8 8 N 1.31518 * 120.00059 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00168 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47431 * 89.99690 * 9 7 5 11 11 H 1.48499 * 109.47441 * 210.00133 * 9 7 5 12 12 H 1.48509 * 109.47127 * 329.99999 * 9 7 5 13 13 N 1.46504 * 109.47079 * 294.99904 * 3 2 1 14 14 C 1.34778 * 119.99959 * 84.99807 * 13 3 2 15 15 O 1.21353 * 119.99830 * 0.02562 * 14 13 3 16 16 C 1.49361 * 119.99728 * 180.02562 * 14 13 3 17 17 O 1.21363 * 119.99960 * 359.97438 * 16 14 13 18 18 N 1.34772 * 119.99672 * 179.72508 * 16 14 13 19 19 C 1.39151 * 119.99851 * 175.18507 * 18 16 14 20 20 C 1.39183 * 119.57454 * 185.06711 * 19 18 16 21 21 C 1.38115 * 119.22149 * 179.97438 * 20 19 18 22 22 C 1.39905 * 118.39585 * 0.02562 * 21 20 19 23 23 C 1.48417 * 120.45622 * 179.97438 * 22 21 20 24 24 N 1.34061 * 126.67829 * 359.68886 * 23 22 21 25 25 N 1.28988 * 107.26645 * 179.87018 * 24 23 22 26 26 N 1.28733 * 108.94440 * 0.39514 * 25 24 23 27 27 H 0.97003 * 125.33289 * 179.72458 * 26 25 24 28 28 N 1.28869 * 109.32772 * 359.74594 * 26 25 24 29 29 C 1.39202 * 119.08363 * 359.97438 * 22 21 20 30 30 N 1.31766 * 120.68522 * 359.74641 * 29 22 21 31 31 H 1.08996 * 109.46853 * 60.00332 * 1 2 3 32 32 H 1.08999 * 109.46917 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47200 * 300.00365 * 1 2 3 34 34 H 1.08995 * 109.47512 * 239.99955 * 2 1 3 35 35 H 1.09005 * 109.47261 * 119.99247 * 2 1 3 36 36 H 0.96998 * 120.00142 * 180.02562 * 8 7 5 37 37 H 0.97001 * 120.00158 * 265.00422 * 13 3 2 38 38 H 0.97003 * 120.00020 * 355.19207 * 18 16 14 39 39 H 1.08008 * 120.38565 * 359.96703 * 20 19 18 40 40 H 1.08005 * 120.80092 * 179.97438 * 21 20 19 41 41 H 1.07994 * 119.65479 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8805 1.3363 9 14 3.0964 0.1090 2.5701 10 1 2.8756 -1.3271 2.2635 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6387 13 7 1.6525 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3397 2.6326 -0.4336 16 6 0.0399 3.3316 -2.6435 17 8 0.8150 3.3637 -3.5768 18 7 -1.1795 3.8936 -2.7606 19 6 -1.5116 4.6017 -3.9115 20 6 -2.7319 5.2674 -3.9803 21 6 -3.0539 5.9685 -5.1259 22 6 -2.1333 5.9806 -6.1793 23 6 -2.4327 6.7189 -7.4316 24 7 -3.5450 7.4161 -7.7037 25 7 -3.4101 7.9043 -8.8900 26 7 -2.2725 7.5358 -9.3668 27 1 -1.9310 7.7666 -10.2449 28 7 -1.6589 6.8120 -8.4949 29 6 -0.9327 5.2908 -6.0367 30 7 -0.6602 4.6380 -4.9250 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8901 36 1 5.8771 0.4821 2.1130 37 1 2.2719 2.1231 -1.9979 38 1 -1.8255 3.8046 -2.0425 39 1 -3.4191 5.2361 -3.1476 40 1 -3.9941 6.4939 -5.2069 41 1 -0.2156 5.2937 -6.8442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604014320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:06 Heat of formation + Delta-G solvation = 116.200269 kcal Electronic energy + Delta-G solvation = -28571.873986 eV Core-core repulsion = 24298.296819 eV Total energy + Delta-G solvation = -4273.577167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.82421 -41.21560 -39.93181 -38.31666 -35.89298 -35.34789 -34.66220 -33.77006 -32.65272 -32.43778 -31.59887 -30.29768 -27.81722 -25.89955 -25.38509 -24.21419 -23.63606 -22.68424 -22.17417 -20.70293 -19.81828 -19.57882 -18.98687 -17.88008 -17.51619 -16.88209 -16.86038 -16.18502 -16.01455 -15.78983 -15.32387 -14.80428 -14.71031 -14.33859 -14.28091 -13.75687 -13.62092 -13.48083 -13.06919 -13.00618 -12.64460 -12.46082 -12.07121 -11.96091 -11.88389 -11.66593 -11.55419 -11.43783 -11.19568 -10.96698 -10.72045 -10.69343 -10.16106 -10.01329 -9.91421 -9.57927 -9.33449 -9.06108 -8.83800 -8.52281 -8.30982 -6.25706 -4.29774 0.19425 0.76380 0.93118 1.61998 1.85556 2.07194 2.30571 3.18876 3.27116 3.31396 3.33735 3.38972 3.65150 3.70235 3.78472 4.24844 4.26086 4.50885 4.57040 4.77759 4.85054 4.91986 5.06337 5.08666 5.33294 5.53490 5.69356 5.84408 5.86084 5.92349 5.98163 6.04445 6.30678 6.51539 6.57788 6.67229 6.72095 6.80948 6.99407 7.14576 7.36060 7.50435 7.75531 7.84952 8.01489 8.35661 8.48173 8.75037 9.32421 10.86074 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.030516 B = 0.001943 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.319668 B =14407.679244 C =14992.534382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.055 0.945 5 C -0.539 4.539 6 H 0.084 0.916 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.659 5.659 14 C 0.498 3.502 15 O -0.531 6.531 16 C 0.498 3.502 17 O -0.444 6.444 18 N -0.639 5.639 19 C 0.386 3.614 20 C -0.206 4.206 21 C -0.002 4.002 22 C -0.114 4.114 23 C 0.233 3.767 24 N -0.271 5.271 25 N -0.049 5.049 26 N -0.226 5.226 27 H 0.476 0.524 28 N -0.294 5.294 29 C 0.183 3.817 30 N -0.476 5.476 31 H 0.048 0.952 32 H 0.035 0.965 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.269 0.731 37 H 0.409 0.591 38 H 0.431 0.569 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.264 10.848 -17.432 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.102 0.898 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.308 5.308 14 C 0.276 3.724 15 O -0.410 6.410 16 C 0.279 3.721 17 O -0.310 6.310 18 N -0.287 5.287 19 C 0.153 3.847 20 C -0.230 4.230 21 C -0.030 4.030 22 C -0.121 4.121 23 C -0.047 4.047 24 N -0.145 5.145 25 N -0.044 5.044 26 N -0.073 5.073 27 H 0.331 0.669 28 N -0.146 5.146 29 C 0.021 3.979 30 N -0.190 5.190 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.244 0.756 38 H 0.271 0.729 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.524 10.638 -17.520 26.967 hybrid contribution -0.707 -0.169 0.323 0.796 sum -18.231 10.469 -17.197 27.160 Atomic orbital electron populations 1.21893 0.96900 0.99447 1.02037 1.22318 0.94397 0.99563 1.01659 1.19370 0.96247 0.88710 0.81851 0.92715 1.21005 0.88194 1.40338 1.08181 0.89841 1.24828 0.94913 0.95066 0.97613 1.69862 1.08673 1.44054 1.29789 0.86909 0.80907 0.80001 0.80961 1.20123 1.22027 1.18423 1.46110 1.13623 1.52345 1.18719 1.19641 0.84347 0.81241 0.87145 1.90739 1.51281 1.59503 1.39510 1.20979 0.81848 0.79715 0.89597 1.90864 1.49371 1.51948 1.38857 1.43386 1.16800 1.50815 1.17727 1.18692 0.89802 0.89424 0.86736 1.21454 0.97630 1.02970 1.00909 1.21346 0.98273 0.93339 0.90016 1.18157 0.98578 1.04567 0.90843 1.23390 0.88186 0.98857 0.94307 1.76077 1.21226 1.11614 1.05553 1.78909 1.03271 1.17111 1.05138 1.47726 1.11076 1.31589 1.16869 0.66944 1.74962 1.24400 1.14830 1.00367 1.22819 0.93021 0.88089 0.93927 1.67822 1.31505 1.20007 0.99693 0.93276 0.94571 0.92636 0.91878 0.92309 0.92146 0.75551 0.72928 0.83351 0.83068 0.81342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.52 37.16 0.32 -2.38 16 2 C -0.14 -2.98 5.11 -26.73 -0.14 -3.11 16 3 C 0.24 5.47 1.83 -69.08 -0.13 5.34 16 4 H 0.06 1.34 6.64 -51.93 -0.34 0.99 16 5 C -0.54 -14.24 9.31 -34.44 -0.32 -14.56 16 6 H 0.08 2.35 7.98 -52.48 -0.42 1.94 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -25.83 13.96 55.43 0.77 -25.05 16 9 Si 0.88 20.92 24.41 -169.99 -4.15 16.77 16 10 H -0.27 -6.30 6.83 56.52 0.39 -5.92 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.26 -5.99 6.53 56.52 0.37 -5.62 16 13 N -0.66 -12.95 5.01 -55.39 -0.28 -13.23 16 14 C 0.50 8.86 6.45 -11.63 -0.08 8.79 16 15 O -0.53 -9.97 13.62 5.49 0.07 -9.90 16 16 C 0.50 7.85 7.84 -11.63 -0.09 7.76 16 17 O -0.44 -7.95 14.72 5.49 0.08 -7.87 16 18 N -0.64 -7.82 5.37 -11.85 -0.06 -7.89 16 19 C 0.39 4.52 7.42 -154.84 -1.15 3.37 16 20 C -0.21 -1.70 9.92 -39.28 -0.39 -2.09 16 21 C 0.00 -0.02 9.83 -39.00 -0.38 -0.40 16 22 C -0.11 -1.09 5.89 -104.72 -0.62 -1.70 16 23 C 0.23 2.21 7.95 -156.29 -1.24 0.97 16 24 N -0.27 -2.67 12.30 32.15 0.40 -2.27 16 25 N -0.05 -0.40 13.47 60.35 0.81 0.41 16 26 N -0.23 -1.29 7.90 60.35 0.48 -0.81 16 27 H 0.48 0.43 8.96 -340.36 -3.05 -2.62 16 28 N -0.29 -2.43 12.10 32.17 0.39 -2.04 16 29 C 0.18 1.99 10.86 -17.22 -0.19 1.80 16 30 N -0.48 -6.42 7.85 -12.14 -0.10 -6.52 16 31 H 0.05 0.88 5.65 -51.93 -0.29 0.59 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 1.07 7.85 -51.93 -0.41 0.66 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.31 3.21 -51.93 -0.17 1.14 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.41 7.75 8.01 -40.82 -0.33 7.42 16 38 H 0.43 4.18 8.17 -40.82 -0.33 3.85 16 39 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.15 0.93 7.96 -52.48 -0.42 0.52 16 41 H 0.17 1.59 7.89 -52.49 -0.41 1.18 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -33.89 352.53 -7.39 -41.28 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.63 Total: 5.93 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -4.50 Total: 5.88 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 2.41 Total: -57.40 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.16 Total: -17.77 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.15 Total: 16.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.89 -7.39 -41.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.485 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds