Wall clock time and date at job start Wed Apr 1 2020 04:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 H 1.09000 * 109.47328 * 54.99639 * 3 2 1 5 5 C 1.50697 * 109.47326 * 175.00112 * 3 2 1 6 6 H 1.08003 * 120.00256 * 119.99723 * 5 3 2 7 7 C 1.37879 * 119.99763 * 299.99662 * 5 3 2 8 8 N 1.31518 * 120.00059 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00168 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47431 * 89.99690 * 9 7 5 11 11 H 1.48499 * 109.47441 * 210.00133 * 9 7 5 12 12 H 1.48509 * 109.47127 * 329.99999 * 9 7 5 13 13 N 1.46504 * 109.47079 * 294.99904 * 3 2 1 14 14 C 1.34778 * 119.99959 * 84.99807 * 13 3 2 15 15 O 1.21353 * 119.99830 * 0.02562 * 14 13 3 16 16 C 1.49361 * 119.99728 * 180.02562 * 14 13 3 17 17 O 1.21363 * 119.99960 * 359.97438 * 16 14 13 18 18 N 1.34772 * 119.99672 * 179.72508 * 16 14 13 19 19 C 1.39151 * 119.99851 * 175.18507 * 18 16 14 20 20 C 1.39183 * 119.57454 * 185.06711 * 19 18 16 21 21 C 1.38115 * 119.22149 * 179.97438 * 20 19 18 22 22 C 1.39905 * 118.39585 * 0.02562 * 21 20 19 23 23 C 1.48417 * 120.45622 * 179.97438 * 22 21 20 24 24 N 1.34061 * 126.67829 * 359.68886 * 23 22 21 25 25 N 1.28988 * 107.26645 * 179.87018 * 24 23 22 26 26 N 1.28733 * 108.94440 * 0.39514 * 25 24 23 27 27 H 0.97003 * 125.33289 * 179.72458 * 26 25 24 28 28 N 1.28869 * 109.32772 * 359.74594 * 26 25 24 29 29 C 1.39202 * 119.08363 * 359.97438 * 22 21 20 30 30 N 1.31766 * 120.68522 * 359.74641 * 29 22 21 31 31 H 1.08996 * 109.46853 * 60.00332 * 1 2 3 32 32 H 1.08999 * 109.46917 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47200 * 300.00365 * 1 2 3 34 34 H 1.08995 * 109.47512 * 239.99955 * 2 1 3 35 35 H 1.09005 * 109.47261 * 119.99247 * 2 1 3 36 36 H 0.96998 * 120.00142 * 180.02562 * 8 7 5 37 37 H 0.97001 * 120.00158 * 265.00422 * 13 3 2 38 38 H 0.97003 * 120.00020 * 355.19207 * 18 16 14 39 39 H 1.08008 * 120.38565 * 359.96703 * 20 19 18 40 40 H 1.08005 * 120.80092 * 179.97438 * 21 20 19 41 41 H 1.07994 * 119.65479 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8805 1.3363 9 14 3.0964 0.1090 2.5701 10 1 2.8756 -1.3271 2.2635 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6387 13 7 1.6525 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3397 2.6326 -0.4336 16 6 0.0399 3.3316 -2.6435 17 8 0.8150 3.3637 -3.5768 18 7 -1.1795 3.8936 -2.7606 19 6 -1.5116 4.6017 -3.9115 20 6 -2.7319 5.2674 -3.9803 21 6 -3.0539 5.9685 -5.1259 22 6 -2.1333 5.9806 -6.1793 23 6 -2.4327 6.7189 -7.4316 24 7 -3.5450 7.4161 -7.7037 25 7 -3.4101 7.9043 -8.8900 26 7 -2.2725 7.5358 -9.3668 27 1 -1.9310 7.7666 -10.2449 28 7 -1.6589 6.8120 -8.4949 29 6 -0.9327 5.2908 -6.0367 30 7 -0.6602 4.6380 -4.9250 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8901 36 1 5.8771 0.4821 2.1130 37 1 2.2719 2.1231 -1.9979 38 1 -1.8255 3.8046 -2.0425 39 1 -3.4191 5.2361 -3.1476 40 1 -3.9941 6.4939 -5.2069 41 1 -0.2156 5.2937 -6.8442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604014320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:05 Heat of formation + Delta-G solvation = 88.996841 kcal Electronic energy + Delta-G solvation = -28573.053615 eV Core-core repulsion = 24298.296819 eV Total energy + Delta-G solvation = -4274.756796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.45854 -42.26227 -41.09459 -39.61337 -37.37975 -36.48248 -35.37708 -34.55838 -34.37055 -33.37894 -33.21090 -31.11461 -29.60520 -27.03419 -26.06933 -25.20547 -24.68211 -24.15796 -23.04064 -22.09874 -21.30189 -20.32564 -20.13371 -19.02840 -18.48145 -18.14274 -17.63796 -17.49726 -17.41698 -17.11141 -16.68187 -16.02408 -15.88115 -15.50599 -15.15869 -15.01439 -14.92119 -14.74021 -14.24872 -14.07265 -13.76303 -13.73298 -13.65586 -13.29588 -12.98009 -12.87904 -12.74407 -12.65284 -12.36722 -12.34513 -12.17717 -11.84265 -11.58374 -11.37428 -11.27687 -10.96366 -10.86340 -10.85819 -10.22003 -9.97038 -9.34990 -8.36978 -6.45007 -0.60363 0.11374 0.22940 0.43371 1.15419 1.27048 1.31304 1.38599 1.42493 1.48150 2.15357 2.27564 2.46175 2.65659 2.80018 2.98023 3.10660 3.29001 3.53890 3.82416 3.84304 4.13838 4.17825 4.22948 4.32097 4.42391 4.42993 4.65475 4.78341 4.80408 5.00314 5.01491 5.07514 5.10197 5.18618 5.29519 5.47165 5.50564 5.52225 5.61062 5.76618 6.05096 6.41685 6.55445 6.69474 6.96351 7.02577 7.11330 7.22596 8.78284 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.030516 B = 0.001943 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.319668 B =14407.679244 C =14992.534382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.249 3.751 4 H 0.041 0.959 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.027 3.973 8 N -0.934 5.934 9 Si 0.941 3.059 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.249 1.249 13 N -0.668 5.668 14 C 0.503 3.497 15 O -0.537 6.537 16 C 0.507 3.493 17 O -0.473 6.473 18 N -0.624 5.624 19 C 0.357 3.643 20 C -0.181 4.181 21 C 0.001 3.999 22 C -0.105 4.105 23 C 0.221 3.779 24 N -0.287 5.287 25 N -0.055 5.055 26 N -0.200 5.200 27 H 0.495 0.505 28 N -0.298 5.298 29 C 0.169 3.831 30 N -0.514 5.514 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.271 0.729 37 H 0.410 0.590 38 H 0.443 0.557 39 H 0.186 0.814 40 H 0.176 0.824 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.537 11.234 -17.875 30.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.059 0.941 5 C -0.579 4.579 6 H 0.069 0.931 7 C -0.173 4.173 8 N -0.572 5.572 9 Si 0.767 3.233 10 H -0.184 1.184 11 H -0.222 1.222 12 H -0.173 1.173 13 N -0.318 5.318 14 C 0.282 3.718 15 O -0.416 6.416 16 C 0.287 3.713 17 O -0.341 6.341 18 N -0.273 5.273 19 C 0.126 3.874 20 C -0.204 4.204 21 C -0.026 4.026 22 C -0.112 4.112 23 C -0.060 4.060 24 N -0.160 5.160 25 N -0.049 5.049 26 N -0.051 5.051 27 H 0.354 0.646 28 N -0.151 5.151 29 C 0.008 3.992 30 N -0.228 5.228 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.246 0.754 38 H 0.285 0.715 39 H 0.203 0.797 40 H 0.194 0.806 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -20.864 11.061 -18.010 29.698 hybrid contribution 0.280 -0.122 0.246 0.393 sum -20.584 10.938 -17.764 29.307 Atomic orbital electron populations 1.21802 0.94575 1.01161 1.01879 1.22241 0.96431 0.97826 1.01396 1.19042 0.93573 0.90120 0.82779 0.94114 1.21242 0.90276 1.39211 1.07153 0.93135 1.25639 0.95902 0.95723 1.00023 1.69993 1.10556 1.45800 1.30884 0.85962 0.79542 0.79970 0.77787 1.18448 1.22160 1.17263 1.45949 1.14730 1.53252 1.17833 1.19928 0.83407 0.80471 0.87948 1.90724 1.51288 1.59496 1.40091 1.20429 0.82861 0.79840 0.88165 1.90863 1.50553 1.53444 1.39272 1.43137 1.15566 1.50096 1.18510 1.18921 0.91171 0.90989 0.86347 1.21764 0.96303 1.00532 1.01766 1.21663 0.98740 0.92956 0.89273 1.18252 0.98195 1.03475 0.91295 1.23405 0.88508 0.99443 0.94629 1.76052 1.21559 1.12146 1.06248 1.78858 1.03934 1.17261 1.04895 1.47788 1.10141 1.29951 1.17200 0.64643 1.74941 1.24578 1.15043 1.00525 1.22834 0.93956 0.88798 0.93573 1.67657 1.33154 1.21179 1.00856 0.92963 0.91946 0.93209 0.91568 0.93137 0.92000 0.75416 0.71481 0.79697 0.80643 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 8.52 71.98 0.61 -4.13 16 2 C -0.14 -5.75 5.11 30.59 0.16 -5.59 16 3 C 0.25 11.30 1.83 44.24 0.08 11.38 16 4 H 0.04 1.98 6.64 -2.39 -0.02 1.96 16 5 C -0.54 -29.36 9.31 25.60 0.24 -29.12 16 6 H 0.05 3.00 7.98 -2.91 -0.02 2.98 16 7 C 0.03 1.51 5.45 84.65 0.46 1.97 16 8 N -0.93 -55.91 13.96 21.45 0.30 -55.61 16 9 Si 0.94 43.02 24.41 68.60 1.67 44.70 16 10 H -0.26 -11.12 6.83 99.48 0.68 -10.44 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 12 H -0.25 -10.84 6.53 99.48 0.65 -10.19 16 13 N -0.67 -26.52 5.01 -447.52 -2.24 -28.77 16 14 C 0.50 17.63 6.45 87.24 0.56 18.20 16 15 O -0.54 -19.42 13.62 -3.26 -0.04 -19.47 16 16 C 0.51 15.77 7.84 87.24 0.68 16.45 16 17 O -0.47 -17.15 14.72 -3.29 -0.05 -17.20 16 18 N -0.62 -14.36 5.37 -309.77 -1.66 -16.02 16 19 C 0.36 7.83 7.42 133.02 0.99 8.81 16 20 C -0.18 -2.44 9.92 22.47 0.22 -2.21 16 21 C 0.00 0.01 9.83 22.64 0.22 0.24 16 22 C -0.11 -1.84 5.89 -19.93 -0.12 -1.95 16 23 C 0.22 3.84 7.95 137.36 1.09 4.93 16 24 N -0.29 -5.10 12.30 -52.20 -0.64 -5.75 16 25 N -0.05 -0.79 13.47 37.02 0.50 -0.29 16 26 N -0.20 -1.90 7.90 37.02 0.29 -1.61 16 27 H 0.49 -0.11 8.96 -347.53 -3.12 -3.23 16 28 N -0.30 -4.48 12.10 -52.14 -0.63 -5.11 16 29 C 0.17 3.60 10.86 84.93 0.92 4.52 16 30 N -0.51 -13.70 7.85 -192.31 -1.51 -15.21 16 31 H 0.05 1.76 5.65 -2.39 -0.01 1.74 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 1.78 7.85 -2.39 -0.02 1.76 16 34 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.05 2.15 3.21 -2.38 -0.01 2.14 16 36 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.41 16.08 8.01 -92.71 -0.74 15.33 16 38 H 0.44 7.59 8.17 -92.71 -0.76 6.84 16 39 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.18 1.52 7.96 -2.91 -0.02 1.50 16 41 H 0.17 3.29 7.89 -2.91 -0.02 3.27 16 Total: -1.00 -74.58 352.53 -1.43 -76.01 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -3.54 Total: 20.84 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: 6.13 Total: 23.49 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -5.60 Total: -128.37 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.09 Total: -36.67 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.67 Total: 44.70 kcal Total: -74.58 -1.43 -76.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.009 kcal (2) G-P(sol) polarization free energy of solvation -74.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds