Wall clock time and date at job start Wed Apr 1 2020 03:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.46499 * 109.46827 * 180.02562 * 8 6 5 10 10 S 1.65606 * 119.99459 * 165.00639 * 9 8 6 11 11 O 1.42104 * 106.39763 * 178.54215 * 10 9 8 12 12 O 1.42096 * 106.40213 * 311.45411 * 10 9 8 13 13 N 1.65599 * 107.22238 * 64.99867 * 10 9 8 14 14 C 1.46504 * 119.99821 * 89.99592 * 13 10 9 15 15 C 1.46494 * 120.00140 * 270.00276 * 13 10 9 16 16 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 17 17 C 1.46491 * 126.04623 * 179.87688 * 16 4 3 18 18 C 1.50702 * 109.46957 * 269.71277 * 17 16 4 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 28 28 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 29 29 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 30 30 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 31 31 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 32 32 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 33 33 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 34 34 H 0.96996 * 120.00616 * 345.00305 * 9 8 6 35 35 H 1.08997 * 109.46844 * 60.00302 * 14 13 10 36 36 H 1.08997 * 109.46676 * 180.02562 * 14 13 10 37 37 H 1.09001 * 109.47032 * 300.00421 * 14 13 10 38 38 H 1.08995 * 109.47627 * 89.99235 * 15 13 10 39 39 H 1.09000 * 109.47115 * 209.99890 * 15 13 10 40 40 H 1.09005 * 109.46977 * 329.99399 * 15 13 10 41 41 H 1.09004 * 109.47166 * 149.71543 * 17 16 4 42 42 H 1.08994 * 109.47507 * 29.71250 * 17 16 4 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 7 5.4271 5.1554 0.0305 10 16 6.5228 6.3374 0.4109 11 8 5.8347 7.5752 0.2932 12 8 7.1678 5.9174 1.6053 13 7 7.6808 6.3317 -0.7729 14 6 7.5163 7.1707 -1.9626 15 6 8.8697 5.4877 -0.6305 16 7 3.6093 -0.6405 0.0013 17 6 4.7870 -1.5116 0.0026 18 6 5.1921 -1.8109 -1.4178 19 1 4.6288 -1.3935 -2.2393 20 6 6.2856 -2.6124 -1.6685 21 7 6.9718 -3.1203 -0.6681 22 14 6.7923 -2.9770 -3.4290 23 1 7.7551 -1.9451 -3.8909 24 1 7.4328 -4.3153 -3.4927 25 1 5.5920 -2.9606 -4.3032 26 7 2.2731 -1.0608 0.0005 27 1 -0.3634 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5136 30 1 1.9901 2.1596 -0.0009 31 1 5.6359 1.1294 0.0155 32 1 6.4297 3.5415 0.9182 33 1 6.4372 3.5481 -0.8617 34 1 4.5130 5.3941 -0.1896 35 1 7.4509 8.2167 -1.6632 36 1 8.3717 7.0346 -2.6242 37 1 6.6037 6.8847 -2.4855 38 1 8.6754 4.5093 -1.0699 39 1 9.7107 5.9553 -1.1424 40 1 9.1075 5.3704 0.4268 41 1 4.5494 -2.4431 0.5166 42 1 5.6079 -1.0120 0.5169 43 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645971110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:38 Heat of formation + Delta-G solvation = -53.036484 kcal Electronic energy + Delta-G solvation = -28318.170031 eV Core-core repulsion = 24140.405408 eV Total energy + Delta-G solvation = -4177.764623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.44769 -40.71981 -38.46627 -37.11774 -36.96296 -36.39022 -35.88993 -35.54830 -33.83510 -30.92094 -30.19900 -28.93209 -28.01334 -27.75445 -25.57273 -24.75333 -23.00323 -21.31977 -21.03753 -20.46283 -19.16018 -18.88636 -18.67301 -18.28860 -17.58987 -17.39705 -16.95295 -16.72271 -16.36046 -15.99173 -15.72066 -15.40327 -15.33232 -14.83020 -14.48281 -14.45187 -14.32773 -14.06241 -14.03972 -13.62261 -13.55530 -13.39132 -13.32084 -13.26771 -13.21929 -13.10020 -12.89376 -12.67332 -12.59205 -12.52003 -12.28949 -11.95470 -11.69022 -11.50009 -11.06781 -10.74826 -10.73506 -10.07564 -9.63660 -9.08292 -8.34381 -6.51856 -0.55729 0.74254 1.27071 1.37706 1.41723 1.51532 1.58986 1.81338 2.03467 2.20549 2.36936 2.45052 2.96425 3.25156 3.28652 3.83612 3.85898 4.09575 4.21372 4.21930 4.41779 4.57099 4.58599 4.62632 4.72459 4.81246 4.83927 4.87515 4.89599 4.96260 4.99247 5.05678 5.08670 5.21054 5.24446 5.51472 5.53066 5.78753 5.88350 5.95611 6.14501 6.26272 6.58189 6.87028 7.02659 7.20404 8.72007 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.003260 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.729710 B = 8586.207588 C =10696.890669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.057 3.943 3 C -0.306 4.306 4 C 0.299 3.701 5 N -0.634 5.634 6 C 0.520 3.480 7 O -0.532 6.532 8 C 0.109 3.891 9 N -1.115 6.115 10 S 2.813 3.187 11 O -1.001 7.001 12 O -1.000 7.000 13 N -1.010 6.010 14 C 0.083 3.917 15 C 0.069 3.931 16 N -0.365 5.365 17 C 0.271 3.729 18 C -0.555 4.555 19 H 0.048 0.952 20 C 0.030 3.970 21 N -0.913 5.913 22 Si 0.968 3.032 23 H -0.259 1.259 24 H -0.278 1.278 25 H -0.281 1.281 26 N -0.332 5.332 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.169 0.831 31 H 0.426 0.574 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.426 0.574 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.025 0.975 42 H 0.053 0.947 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 18.259 -2.509 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C -0.338 4.338 4 C 0.076 3.924 5 N -0.283 5.283 6 C 0.307 3.693 7 O -0.406 6.406 8 C -0.021 4.021 9 N -0.879 5.879 10 S 2.820 3.180 11 O -0.985 6.985 12 O -0.983 6.983 13 N -0.854 5.854 14 C -0.062 4.062 15 C -0.076 4.076 16 N -0.150 5.150 17 C 0.152 3.848 18 C -0.593 4.593 19 H 0.066 0.934 20 C -0.172 4.172 21 N -0.551 5.551 22 Si 0.792 3.208 23 H -0.183 1.183 24 H -0.203 1.203 25 H -0.206 1.206 26 N -0.157 5.157 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.187 0.813 31 H 0.265 0.735 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.264 0.736 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.836 17.713 -1.655 18.199 hybrid contribution 0.392 -0.261 -1.045 1.146 sum 4.228 17.452 -2.700 18.159 Atomic orbital electron populations 1.20220 0.84080 1.03866 1.03805 1.22874 0.98693 0.90156 0.99081 1.21491 0.89091 1.00823 1.22406 1.18277 0.89497 0.82836 1.01762 1.42818 1.07857 1.05723 1.71884 1.21088 0.92279 0.80981 0.74986 1.90621 1.27836 1.73695 1.48489 1.21182 0.93395 0.79742 1.07733 1.55685 1.26951 1.16809 1.88443 1.00957 0.72103 0.71909 0.73031 1.93588 1.74779 1.42835 1.87302 1.93580 1.76050 1.83318 1.45368 1.57473 1.34542 1.56284 1.37055 1.21744 1.04264 0.93845 0.86347 1.21956 0.86947 0.94944 1.03718 1.49179 1.06287 1.02890 1.56688 1.19261 0.78620 0.89025 0.97891 1.21391 1.13459 1.32927 0.91563 0.93385 1.25653 0.95416 0.94253 1.01898 1.69992 1.19354 1.32903 1.32861 0.85402 0.78275 0.78272 0.78811 1.18315 1.20321 1.20592 1.77325 0.86534 1.23643 1.28192 0.89333 0.88808 0.90963 0.81333 0.73510 0.84956 0.84405 0.73641 0.92110 0.87621 0.91587 0.90677 0.88499 0.90573 0.95706 0.92962 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.44 71.23 0.74 -0.93 16 2 C 0.06 2.22 7.21 43.07 0.31 2.53 16 3 C -0.31 -11.96 9.58 22.14 0.21 -11.75 16 4 C 0.30 12.01 7.66 131.32 1.01 13.01 16 5 N -0.63 -19.54 5.41 -308.55 -1.67 -21.21 16 6 C 0.52 13.71 7.86 87.66 0.69 14.40 16 7 O -0.53 -16.90 12.86 -3.07 -0.04 -16.94 16 8 C 0.11 1.82 6.73 85.64 0.58 2.40 16 9 N -1.12 -20.10 5.99 -190.79 -1.14 -21.24 16 10 S 2.81 54.29 6.15 -56.49 -0.35 53.95 16 11 O -1.00 -25.52 17.30 -128.00 -2.21 -27.74 16 12 O -1.00 -24.58 16.21 -128.00 -2.07 -26.66 16 13 N -1.01 -12.91 3.64 -562.70 -2.05 -14.95 16 14 C 0.08 0.80 10.30 127.77 1.32 2.12 16 15 C 0.07 0.62 10.63 127.77 1.36 1.98 16 16 N -0.37 -16.86 3.60 -348.73 -1.26 -18.11 16 17 C 0.27 13.38 6.01 85.64 0.51 13.89 16 18 C -0.56 -29.07 9.39 25.60 0.24 -28.83 16 19 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 20 C 0.03 1.51 5.46 84.66 0.46 1.97 16 21 N -0.91 -48.14 13.29 21.45 0.28 -47.85 16 22 Si 0.97 40.16 29.54 68.60 2.03 42.19 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 N -0.33 -15.38 12.56 -47.45 -0.60 -15.98 16 27 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.17 6.28 5.83 -2.91 -0.02 6.26 16 31 H 0.43 11.58 7.96 -92.70 -0.74 10.84 16 32 H 0.13 1.81 7.75 -2.39 -0.02 1.79 16 33 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.43 8.27 7.70 -96.75 -0.75 7.52 16 35 H 0.06 0.67 8.01 -2.39 -0.02 0.65 16 36 H 0.11 0.50 7.79 -2.39 -0.02 0.48 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.10 0.51 7.92 -2.39 -0.02 0.49 16 40 H 0.08 0.84 7.02 -2.38 -0.02 0.83 16 41 H 0.02 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.05 2.45 7.49 -2.39 -0.02 2.43 16 43 H 0.27 13.53 8.31 -92.70 -0.77 12.76 16 Total: -1.00 -76.36 379.73 -2.07 -78.42 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.42 Total: 25.33 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 7.43 Total: 10.79 kcal Atomic # 7 Polarization: -132.92 SS G_CDS: -6.43 Total: -139.35 kcal Atomic # 8 Polarization: -67.00 SS G_CDS: -4.33 Total: -71.33 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 16 Polarization: 54.29 SS G_CDS: -0.35 Total: 53.95 kcal Total: -76.36 -2.07 -78.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645971110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.388 kcal (2) G-P(sol) polarization free energy of solvation -76.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds