Wall clock time and date at job start Wed Apr 1 2020 03:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28056 * 124.24201 * 2 1 4 4 C 1.34418 * 117.91739 * 180.02562 * 3 2 1 5 5 C 1.41242 * 129.47995 * 179.97438 * 4 3 2 6 6 C 1.35755 * 120.63428 * 180.02562 * 5 4 3 7 7 C 1.40200 * 120.61340 * 359.97438 * 6 5 4 8 8 C 1.47588 * 120.12416 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99904 * 7.95406 * 8 7 6 10 10 N 1.34780 * 119.99807 * 187.95442 * 8 7 6 11 11 C 1.47014 * 125.64956 * 354.81387 * 10 8 7 12 12 C 1.54323 * 107.27473 * 178.90283 * 11 10 8 13 13 C 1.55156 * 102.93994 * 337.81295 * 12 11 10 14 14 H 1.09003 * 111.03614 * 277.40710 * 13 12 11 15 15 C 1.53001 * 111.00724 * 153.57162 * 13 12 11 16 16 N 1.46498 * 109.47398 * 181.34254 * 15 13 12 17 17 C 1.36933 * 120.00084 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00060 * 0.02562 * 17 16 15 19 19 C 1.38821 * 119.99942 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99633 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47207 * 60.00546 * 21 19 17 23 23 H 1.48501 * 109.46567 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47300 * 299.99915 * 21 19 17 25 25 C 1.47420 * 125.64519 * 174.77380 * 10 8 7 26 26 C 1.39183 * 119.74964 * 0.27666 * 7 6 5 27 27 C 1.38916 * 119.84406 * 359.46752 * 26 7 6 28 28 S 1.70654 * 124.24240 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47349 * 269.99872 * 1 2 3 30 30 H 1.09002 * 109.47183 * 30.00017 * 1 2 3 31 31 H 1.09004 * 109.46946 * 150.00135 * 1 2 3 32 32 H 1.08000 * 119.68453 * 0.04108 * 5 4 3 33 33 H 1.08000 * 119.69556 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.88750 * 298.32586 * 11 10 8 35 35 H 1.09004 * 109.88523 * 59.49048 * 11 10 8 36 36 H 1.08994 * 110.72843 * 219.44400 * 12 11 10 37 37 H 1.09004 * 110.71520 * 96.16792 * 12 11 10 38 38 H 1.08990 * 109.46949 * 301.34854 * 15 13 12 39 39 H 1.09008 * 109.46684 * 61.34849 * 15 13 12 40 40 H 0.97004 * 119.99942 * 0.02562 * 16 15 13 41 41 H 0.97001 * 119.99740 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.36841 * 85.32652 * 25 10 8 43 43 H 1.09000 * 110.46455 * 323.04649 * 25 10 8 44 44 H 1.07995 * 120.07397 * 179.72370 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9105 -0.0005 5 6 4.5762 1.8951 -0.0011 6 6 5.8864 1.5399 -0.0021 7 6 6.2598 0.1885 -0.0021 8 6 7.6875 -0.1856 -0.0037 9 8 8.5400 0.6692 0.1405 10 7 8.0461 -1.4747 -0.1652 11 6 7.1244 -2.6174 -0.2416 12 6 7.9806 -3.8833 -0.4557 13 6 9.2954 -3.3165 -1.0535 14 1 9.1981 -3.1518 -2.1267 15 6 10.4785 -4.2373 -0.7481 16 7 11.7050 -3.6555 -1.2989 17 6 12.8999 -4.3069 -1.1472 18 1 12.9381 -5.2497 -0.6217 19 6 14.0622 -3.7553 -1.6687 20 7 14.0157 -2.6061 -2.3086 21 14 15.6921 -4.6443 -1.4622 22 1 15.6111 -5.9817 -2.1024 23 1 16.7722 -3.8532 -2.1047 24 1 15.9887 -4.8048 -0.0161 25 6 9.4277 -1.9722 -0.2952 26 6 5.2789 -0.7990 -0.0068 27 6 3.9369 -0.4404 -0.0003 28 16 2.4672 -1.4107 -0.0006 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.3056 2.9407 -0.0006 33 1 6.6483 2.3053 -0.0030 34 1 6.5621 -2.7031 0.6883 35 1 6.4403 -2.4865 -1.0801 36 1 7.4977 -4.5612 -1.1594 37 1 8.1729 -4.3838 0.4934 38 1 10.5824 -4.3495 0.3310 39 1 10.3049 -5.2140 -1.2000 40 1 11.6708 -2.8086 -1.7706 41 1 14.8278 -2.2209 -2.6734 42 1 9.8670 -2.1337 0.6891 43 1 10.0329 -1.2707 -0.8695 44 1 5.5606 -1.8415 -0.0112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662706471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:48 Heat of formation + Delta-G solvation = 36.077121 kcal Electronic energy + Delta-G solvation = -26599.550431 eV Core-core repulsion = 22836.499328 eV Total energy + Delta-G solvation = -3763.051104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.00023 -40.95743 -39.03762 -37.88213 -36.51848 -34.18735 -32.77362 -32.52303 -31.92265 -30.17463 -29.51958 -27.20080 -25.73179 -25.07917 -24.27157 -23.08238 -22.21779 -21.43504 -21.14208 -19.29679 -19.18008 -18.59802 -17.63105 -17.30215 -16.61996 -16.52319 -16.36720 -16.22438 -15.86411 -15.41117 -15.28449 -14.92194 -14.79144 -14.57690 -14.35387 -14.20636 -13.89675 -13.81315 -13.73303 -13.39595 -13.11533 -13.09389 -12.88067 -12.70423 -12.48219 -12.32492 -12.15240 -11.98774 -11.76029 -11.63821 -11.47906 -11.30584 -11.23238 -10.92248 -10.70534 -9.93931 -9.68359 -9.24564 -8.99391 -7.94175 -5.23381 -1.01558 -0.02338 0.11755 0.57075 0.81604 1.47141 1.50648 1.56703 1.73355 1.80639 2.56527 2.58283 2.78608 3.19749 3.35900 3.39902 3.52041 3.67263 3.86795 3.87979 3.95830 4.05701 4.16894 4.19235 4.27412 4.35126 4.48661 4.54596 4.60097 4.65914 4.66750 4.76999 4.80785 4.84973 4.92265 4.97468 5.02932 5.08151 5.14839 5.19805 5.24011 5.41148 5.43672 5.50687 6.27319 6.33694 6.49025 6.91675 7.33479 8.10453 8.31292 9.29267 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.026364 B = 0.002036 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.798922 B =13747.397564 C =14627.657134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.096 3.904 3 N -0.507 5.507 4 C 0.094 3.906 5 C -0.079 4.079 6 C -0.059 4.059 7 C -0.129 4.129 8 C 0.565 3.435 9 O -0.581 6.581 10 N -0.609 5.609 11 C 0.080 3.920 12 C -0.113 4.113 13 C -0.097 4.097 14 H 0.079 0.921 15 C 0.163 3.837 16 N -0.749 5.749 17 C -0.244 4.244 18 H 0.080 0.920 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.975 3.025 22 H -0.274 1.274 23 H -0.299 1.299 24 H -0.278 1.278 25 C 0.120 3.880 26 C -0.054 4.054 27 C -0.220 4.220 28 S 0.165 5.835 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.027 0.973 39 H 0.038 0.962 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.222 -0.109 5.823 34.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.187 4.187 3 N -0.223 5.223 4 C -0.028 4.028 5 C -0.099 4.099 6 C -0.080 4.080 7 C -0.135 4.135 8 C 0.356 3.644 9 O -0.463 6.463 10 N -0.341 5.341 11 C -0.041 4.041 12 C -0.150 4.150 13 C -0.116 4.116 14 H 0.098 0.902 15 C 0.037 3.963 16 N -0.392 5.392 17 C -0.376 4.376 18 H 0.098 0.902 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.804 3.196 22 H -0.200 1.200 23 H -0.225 1.225 24 H -0.204 1.204 25 C -0.003 4.003 26 C -0.076 4.076 27 C -0.338 4.338 28 S 0.422 5.578 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.113 0.887 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -34.289 -0.324 5.975 34.808 hybrid contribution 2.345 1.347 -0.233 2.714 sum -31.945 1.023 5.742 32.473 Atomic orbital electron populations 1.20852 0.81826 1.06099 1.05908 1.27661 1.03679 0.90769 0.96572 1.66237 1.03958 1.32722 1.19354 1.19626 0.89726 0.92518 1.00922 1.20413 0.89568 0.99602 1.00355 1.20803 0.96321 0.95242 0.95680 1.19677 0.91266 0.95059 1.07538 1.18199 0.88697 0.81031 0.76440 1.90793 1.53406 1.49961 1.52121 1.48482 1.08998 1.06015 1.70574 1.22921 0.93026 0.84760 1.03369 1.22763 0.92625 0.96175 1.03485 1.22427 0.96177 0.93181 0.99854 0.90232 1.20784 0.84256 0.95011 0.96294 1.42631 1.03647 1.25429 1.67454 1.19636 0.86447 1.03020 1.28456 0.90169 1.25629 1.01606 0.98352 1.01643 1.69832 1.28049 1.20589 1.43825 0.85184 0.79127 0.77615 0.77675 1.20027 1.22524 1.20415 1.22130 0.82483 0.95652 1.00012 1.22162 0.88579 1.02769 0.94059 1.24038 1.00013 0.97384 1.12386 1.83734 0.92851 1.08554 1.72706 0.87249 0.88587 0.87069 0.82771 0.83998 0.87666 0.88260 0.86476 0.88675 0.95530 0.94457 0.79708 0.94149 0.92000 0.93684 0.79215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.44 71.23 0.74 0.34 16 2 C 0.10 1.28 7.29 88.66 0.65 1.93 16 3 N -0.51 -10.16 10.56 -182.20 -1.92 -12.08 16 4 C 0.09 2.04 7.00 39.95 0.28 2.32 16 5 C -0.08 -1.68 10.03 22.43 0.23 -1.45 16 6 C -0.06 -1.41 9.49 22.17 0.21 -1.20 16 7 C -0.13 -3.24 5.87 -20.11 -0.12 -3.36 16 8 C 0.57 18.08 7.80 86.71 0.68 18.75 16 9 O -0.58 -24.02 16.67 -3.99 -0.07 -24.08 16 10 N -0.61 -17.00 3.33 -829.12 -2.76 -19.75 16 11 C 0.08 1.34 4.87 86.73 0.42 1.76 16 12 C -0.11 -1.92 6.42 31.78 0.20 -1.72 16 13 C -0.10 -2.80 3.10 -9.40 -0.03 -2.83 16 14 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 15 C 0.16 6.00 5.71 86.38 0.49 6.49 16 16 N -0.75 -37.83 5.45 -343.45 -1.87 -39.70 16 17 C -0.24 -13.61 9.99 84.04 0.84 -12.77 16 18 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 19 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 20 N -0.97 -61.20 13.06 21.65 0.28 -60.92 16 21 Si 0.98 46.71 29.55 68.60 2.03 48.73 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 25 C 0.12 4.06 6.06 86.86 0.53 4.59 16 26 C -0.05 -1.03 8.62 22.66 0.20 -0.84 16 27 C -0.22 -4.12 6.54 22.90 0.15 -3.97 16 28 S 0.16 1.95 23.11 -56.49 -1.31 0.64 16 29 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.14 3.48 7.66 -2.91 -0.02 3.46 16 34 H 0.11 1.23 6.82 -2.39 -0.02 1.21 16 35 H 0.10 1.28 6.65 -2.39 -0.02 1.27 16 36 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.45 8.04 -2.39 -0.02 1.43 16 38 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 39 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.37 20.45 7.53 -92.71 -0.70 19.75 16 41 H 0.25 15.34 8.31 -92.71 -0.77 14.56 16 42 H 0.06 2.22 8.00 -2.39 -0.02 2.20 16 43 H 0.04 1.88 8.09 -2.39 -0.02 1.86 16 44 H 0.19 2.57 2.75 -8.15 -0.02 2.55 16 Total: -1.00 -79.95 374.47 0.65 -79.30 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.33 Total: 24.02 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 5.93 Total: 3.84 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -6.27 Total: -132.45 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.07 Total: -24.08 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.31 Total: 0.64 kcal Total: -79.95 0.65 -79.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662706471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.376 kcal (2) G-P(sol) polarization free energy of solvation -79.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds