Wall clock time and date at job start Wed Apr 1 2020 03:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29513 * 121.52920 * 2 1 4 4 S 1.69489 * 107.84334 * 180.21512 * 3 2 1 5 5 C 1.72022 * 96.02361 * 359.74475 * 4 3 2 6 6 C 1.50702 * 127.31468 * 179.97438 * 5 4 3 7 7 C 1.37897 * 105.36767 * 0.02562 * 5 4 3 8 8 C 1.47341 * 123.08658 * 179.97438 * 7 5 4 9 9 O 1.21609 * 120.00337 * 90.00283 * 8 7 5 10 10 N 1.34777 * 119.99505 * 269.99635 * 8 7 5 11 11 C 1.46498 * 119.99614 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47049 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47670 * 294.99674 * 12 11 10 14 14 N 1.46506 * 109.47253 * 55.00005 * 12 11 10 15 15 C 1.36931 * 119.99939 * 205.00086 * 14 12 11 16 16 H 1.08000 * 120.00644 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99715 * 179.97438 * 15 14 12 18 18 N 1.31621 * 119.99673 * 179.72262 * 17 15 14 19 19 Si 1.86795 * 120.00115 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47274 * 89.99913 * 19 17 15 21 21 H 1.48505 * 109.47015 * 209.99478 * 19 17 15 22 22 H 1.48498 * 109.47362 * 329.99904 * 19 17 15 23 23 C 1.50706 * 109.47251 * 174.99464 * 12 11 10 24 24 C 1.38225 * 120.00399 * 279.72776 * 23 12 11 25 25 C 1.38233 * 120.00144 * 179.78708 * 24 23 12 26 26 C 1.38235 * 119.99807 * 0.44215 * 25 24 23 27 27 C 1.38234 * 120.00183 * 359.81372 * 26 25 24 28 28 C 1.38233 * 119.99894 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.46946 * 270.24861 * 1 2 3 30 30 H 1.09002 * 109.46999 * 30.25354 * 1 2 3 31 31 H 1.09004 * 109.46718 * 150.24919 * 1 2 3 32 32 H 1.09002 * 109.46795 * 270.02523 * 6 5 4 33 33 H 1.09002 * 109.47293 * 30.02185 * 6 5 4 34 34 H 1.09003 * 109.47074 * 150.02561 * 6 5 4 35 35 H 0.96998 * 120.00503 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47312 * 60.00223 * 11 10 8 37 37 H 1.08997 * 109.47437 * 299.99742 * 11 10 8 38 38 H 0.97000 * 119.99307 * 24.99880 * 14 12 11 39 39 H 0.97000 * 120.00043 * 180.02562 * 18 17 15 40 40 H 1.08001 * 119.99664 * 359.97438 * 24 23 12 41 41 H 1.08005 * 120.00083 * 180.27880 * 25 24 23 42 42 H 1.08007 * 119.99863 * 179.83727 * 26 25 24 43 43 H 1.07997 * 120.00377 * 180.02562 * 27 26 25 44 44 H 1.07995 * 120.00096 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8311 0.7029 -0.0061 5 6 3.6017 -1.0019 -0.0010 6 6 4.6678 -2.0671 -0.0036 7 6 2.2352 -1.1868 0.0046 8 6 1.6037 -2.5180 0.0097 9 8 1.3471 -3.0653 1.0649 10 7 1.3103 -3.1291 -1.1552 11 6 0.6819 -4.4524 -1.1502 12 6 0.4571 -4.9157 -2.5909 13 1 -0.2625 -4.2567 -3.0766 14 7 1.7268 -4.8747 -3.3208 15 6 1.7292 -4.7387 -4.6833 16 1 0.7952 -4.6621 -5.2201 17 6 2.9322 -4.6994 -5.3748 18 7 2.9344 -4.5741 -6.6850 19 14 4.5478 -4.8327 -4.4466 20 1 4.9412 -6.2607 -4.3402 21 1 5.6012 -4.0821 -5.1762 22 1 4.3854 -4.2613 -3.0856 23 6 -0.0752 -6.3256 -2.5880 24 6 0.7901 -7.3908 -2.4226 25 6 0.3012 -8.6838 -2.4155 26 6 -1.0519 -8.9120 -2.5830 27 6 -1.9165 -7.8471 -2.7537 28 6 -1.4282 -6.5538 -2.7564 29 1 -0.3633 0.0045 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8923 -0.5100 32 1 4.9203 -2.3259 -1.0319 33 1 5.5561 -1.6933 0.5055 34 1 4.2980 -2.9525 0.5136 35 1 1.5145 -2.6924 -1.9969 36 1 -0.2760 -4.3978 -0.6330 37 1 1.3318 -5.1614 -0.6374 38 1 2.5657 -4.9439 -2.8387 39 1 3.7750 -4.5470 -7.1682 40 1 1.8477 -7.2127 -2.2959 41 1 0.9767 -9.5158 -2.2818 42 1 -1.4335 -9.9224 -2.5801 43 1 -2.9737 -8.0253 -2.8841 44 1 -2.1037 -5.7218 -2.8894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664603634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:02 Heat of formation + Delta-G solvation = 37.312542 kcal Electronic energy + Delta-G solvation = -27652.431778 eV Core-core repulsion = 23889.434246 eV Total energy + Delta-G solvation = -3762.997532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.34250 -39.08831 -38.16677 -36.09859 -33.76883 -33.40239 -32.08716 -30.55438 -30.07338 -29.91878 -28.63697 -27.43338 -24.12601 -22.99774 -22.49621 -21.97913 -21.16454 -20.14979 -19.23436 -18.34051 -17.86853 -16.84842 -16.34687 -16.03232 -15.42387 -14.97788 -14.71742 -14.61938 -14.51249 -14.26769 -13.87253 -13.59277 -13.53593 -13.20610 -13.05631 -12.93214 -12.88328 -12.72681 -12.51127 -12.39239 -12.30574 -12.24630 -11.48769 -11.30906 -11.11971 -10.96583 -10.87838 -10.80737 -10.64000 -10.26476 -9.93412 -9.73425 -9.48373 -9.18231 -8.94463 -8.77283 -8.50633 -8.30583 -7.50090 -5.91111 -3.30090 0.43184 1.21190 1.60752 1.75987 1.82303 2.04494 2.60024 3.20191 3.25989 3.32942 3.39033 4.19528 4.19629 4.43537 4.74214 4.82549 4.96965 5.04090 5.14058 5.22639 5.27753 5.30519 5.31418 5.35844 5.38012 5.39851 5.48328 5.56302 5.61421 5.63938 5.77093 5.88556 5.90564 5.96017 6.01215 6.24929 6.36170 6.45325 6.48988 6.54895 6.84407 6.89215 7.12915 7.41341 7.61844 7.81667 8.23941 8.26372 9.01892 9.73380 9.90585 11.26543 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.003924 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.489811 B = 7133.811560 C = 8784.043516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.155 3.845 3 N -0.468 5.468 4 S 0.275 5.725 5 C -0.128 4.128 6 C -0.090 4.090 7 C -0.215 4.215 8 C 0.589 3.411 9 O -0.536 6.536 10 N -0.706 5.706 11 C 0.117 3.883 12 C 0.204 3.796 13 H 0.075 0.925 14 N -0.738 5.738 15 C -0.248 4.248 16 H 0.092 0.908 17 C 0.013 3.987 18 N -0.927 5.927 19 Si 0.878 3.122 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.080 4.080 24 C -0.087 4.087 25 C -0.127 4.127 26 C -0.131 4.131 27 C -0.127 4.127 28 C -0.116 4.116 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.413 0.587 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.363 0.637 39 H 0.261 0.739 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 3.318 13.452 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.023 4.023 3 N -0.289 5.289 4 S 0.431 5.569 5 C -0.259 4.259 6 C -0.149 4.149 7 C -0.236 4.236 8 C 0.371 3.629 9 O -0.413 6.413 10 N -0.357 5.357 11 C -0.008 4.008 12 C 0.094 3.906 13 H 0.093 0.907 14 N -0.381 5.381 15 C -0.377 4.377 16 H 0.110 0.890 17 C -0.184 4.184 18 N -0.573 5.573 19 Si 0.708 3.292 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.084 4.084 24 C -0.106 4.106 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.134 4.134 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.196 0.804 39 H 0.071 0.929 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.256 5.061 13.912 14.974 hybrid contribution 0.602 -1.732 -0.093 1.836 sum -1.654 3.328 13.819 14.310 Atomic orbital electron populations 1.20646 0.86068 1.04306 1.04025 1.21254 0.98933 0.86873 0.95190 1.76365 1.00177 1.25933 1.26443 1.83950 1.10546 0.95289 1.67122 1.26068 0.97275 1.02603 0.99938 1.20469 0.94763 0.95289 1.04386 1.20194 0.92526 0.95944 1.14914 1.17306 0.77903 0.83573 0.84150 1.90798 1.53510 1.65888 1.31143 1.46039 1.61252 1.19676 1.08749 1.21710 0.98155 0.83190 0.97720 1.19439 0.90052 0.91313 0.89803 0.90691 1.42804 1.01336 1.88784 1.05143 1.19003 0.94805 1.43186 0.80733 0.88994 1.24645 0.97018 1.01556 0.95173 1.69687 1.25888 1.56231 1.05516 0.86672 0.85372 0.77996 0.79154 1.21034 1.21658 1.20264 1.20811 0.93031 0.97363 0.97204 1.20902 0.99660 0.91945 0.98068 1.21087 0.95384 0.96861 1.01145 1.21000 0.93786 0.98434 1.01753 1.21010 0.99149 0.92965 1.01389 1.21007 0.95064 0.96677 1.00698 0.89461 0.89670 0.89924 0.88810 0.89880 0.89634 0.75054 0.90739 0.91373 0.80354 0.92908 0.86497 0.86822 0.86955 0.86806 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.96 36.01 0.36 -0.59 16 2 C 0.16 2.08 6.75 -83.19 -0.56 1.52 16 3 N -0.47 -6.45 11.97 32.50 0.39 -6.06 16 4 S 0.28 3.27 23.69 -107.50 -2.55 0.73 16 5 C -0.13 -1.65 6.67 -34.43 -0.23 -1.88 16 6 C -0.09 -1.00 10.19 36.01 0.37 -0.63 16 7 C -0.22 -3.04 5.61 -105.95 -0.59 -3.63 16 8 C 0.59 8.95 5.77 -12.56 -0.07 8.88 16 9 O -0.54 -9.59 17.11 5.27 0.09 -9.50 16 10 N -0.71 -10.30 5.38 -61.42 -0.33 -10.63 16 11 C 0.12 1.71 5.21 -4.04 -0.02 1.69 16 12 C 0.20 3.38 2.65 -69.08 -0.18 3.20 16 13 H 0.08 1.25 7.94 -51.93 -0.41 0.84 16 14 N -0.74 -14.91 3.59 -54.55 -0.20 -15.10 16 15 C -0.25 -6.24 10.40 -15.06 -0.16 -6.40 16 16 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 17 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 18 N -0.93 -27.44 13.97 55.49 0.78 -26.66 16 19 Si 0.88 20.27 27.74 -169.99 -4.71 15.55 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -5.76 6.52 56.52 0.37 -5.39 16 23 C -0.08 -1.33 4.92 -104.62 -0.52 -1.84 16 24 C -0.09 -1.47 9.33 -39.59 -0.37 -1.83 16 25 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 26 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 27 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 28 C -0.12 -1.72 9.67 -39.58 -0.38 -2.11 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.86 7.39 -51.93 -0.38 0.48 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16 35 H 0.41 6.19 8.12 -40.82 -0.33 5.86 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.36 7.32 5.66 -40.82 -0.23 7.09 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.12 2.01 7.71 -52.49 -0.40 1.60 16 41 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 42 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 43 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.12 1.52 8.04 -52.49 -0.42 1.09 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -31.25 389.06 -10.31 -41.56 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -5.99 Total: 14.29 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -3.65 Total: -10.05 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.64 Total: -58.45 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.71 Total: 15.55 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.55 Total: 0.73 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.25 -10.31 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664603634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.874 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds