Wall clock time and date at job start Wed Apr 1 2020 03:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29513 * 121.52920 * 2 1 4 4 S 1.69489 * 107.84334 * 180.21512 * 3 2 1 5 5 C 1.72022 * 96.02361 * 359.74475 * 4 3 2 6 6 C 1.50702 * 127.31468 * 179.97438 * 5 4 3 7 7 C 1.37897 * 105.36767 * 0.02562 * 5 4 3 8 8 C 1.47341 * 123.08658 * 179.97438 * 7 5 4 9 9 O 1.21609 * 120.00337 * 90.00283 * 8 7 5 10 10 N 1.34777 * 119.99505 * 269.99635 * 8 7 5 11 11 C 1.46498 * 119.99614 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47049 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47670 * 294.99674 * 12 11 10 14 14 N 1.46506 * 109.47253 * 55.00005 * 12 11 10 15 15 C 1.36931 * 119.99939 * 205.00086 * 14 12 11 16 16 H 1.08000 * 120.00644 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99715 * 179.97438 * 15 14 12 18 18 N 1.31621 * 119.99673 * 179.72262 * 17 15 14 19 19 Si 1.86795 * 120.00115 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47274 * 89.99913 * 19 17 15 21 21 H 1.48505 * 109.47015 * 209.99478 * 19 17 15 22 22 H 1.48498 * 109.47362 * 329.99904 * 19 17 15 23 23 C 1.50706 * 109.47251 * 174.99464 * 12 11 10 24 24 C 1.38225 * 120.00399 * 279.72776 * 23 12 11 25 25 C 1.38233 * 120.00144 * 179.78708 * 24 23 12 26 26 C 1.38235 * 119.99807 * 0.44215 * 25 24 23 27 27 C 1.38234 * 120.00183 * 359.81372 * 26 25 24 28 28 C 1.38233 * 119.99894 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.46946 * 270.24861 * 1 2 3 30 30 H 1.09002 * 109.46999 * 30.25354 * 1 2 3 31 31 H 1.09004 * 109.46718 * 150.24919 * 1 2 3 32 32 H 1.09002 * 109.46795 * 270.02523 * 6 5 4 33 33 H 1.09002 * 109.47293 * 30.02185 * 6 5 4 34 34 H 1.09003 * 109.47074 * 150.02561 * 6 5 4 35 35 H 0.96998 * 120.00503 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47312 * 60.00223 * 11 10 8 37 37 H 1.08997 * 109.47437 * 299.99742 * 11 10 8 38 38 H 0.97000 * 119.99307 * 24.99880 * 14 12 11 39 39 H 0.97000 * 120.00043 * 180.02562 * 18 17 15 40 40 H 1.08001 * 119.99664 * 359.97438 * 24 23 12 41 41 H 1.08005 * 120.00083 * 180.27880 * 25 24 23 42 42 H 1.08007 * 119.99863 * 179.83727 * 26 25 24 43 43 H 1.07997 * 120.00377 * 180.02562 * 27 26 25 44 44 H 1.07995 * 120.00096 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8311 0.7029 -0.0061 5 6 3.6017 -1.0019 -0.0010 6 6 4.6678 -2.0671 -0.0036 7 6 2.2352 -1.1868 0.0046 8 6 1.6037 -2.5180 0.0097 9 8 1.3471 -3.0653 1.0649 10 7 1.3103 -3.1291 -1.1552 11 6 0.6819 -4.4524 -1.1502 12 6 0.4571 -4.9157 -2.5909 13 1 -0.2625 -4.2567 -3.0766 14 7 1.7268 -4.8747 -3.3208 15 6 1.7292 -4.7387 -4.6833 16 1 0.7952 -4.6621 -5.2201 17 6 2.9322 -4.6994 -5.3748 18 7 2.9344 -4.5741 -6.6850 19 14 4.5478 -4.8327 -4.4466 20 1 4.9412 -6.2607 -4.3402 21 1 5.6012 -4.0821 -5.1762 22 1 4.3854 -4.2613 -3.0856 23 6 -0.0752 -6.3256 -2.5880 24 6 0.7901 -7.3908 -2.4226 25 6 0.3012 -8.6838 -2.4155 26 6 -1.0519 -8.9120 -2.5830 27 6 -1.9165 -7.8471 -2.7537 28 6 -1.4282 -6.5538 -2.7564 29 1 -0.3633 0.0045 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8923 -0.5100 32 1 4.9203 -2.3259 -1.0319 33 1 5.5561 -1.6933 0.5055 34 1 4.2980 -2.9525 0.5136 35 1 1.5145 -2.6924 -1.9969 36 1 -0.2760 -4.3978 -0.6330 37 1 1.3318 -5.1614 -0.6374 38 1 2.5657 -4.9439 -2.8387 39 1 3.7750 -4.5470 -7.1682 40 1 1.8477 -7.2127 -2.2959 41 1 0.9767 -9.5158 -2.2818 42 1 -1.4335 -9.9224 -2.5801 43 1 -2.9737 -8.0253 -2.8841 44 1 -2.1037 -5.7218 -2.8894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664603634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:01 Heat of formation + Delta-G solvation = 18.487611 kcal Electronic energy + Delta-G solvation = -27653.248089 eV Core-core repulsion = 23889.434246 eV Total energy + Delta-G solvation = -3763.813842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.47413 -40.28177 -39.27946 -37.49700 -35.27561 -34.40528 -33.72266 -31.86703 -31.51559 -30.86762 -29.67462 -28.61898 -25.62672 -24.48515 -23.59896 -23.16572 -22.23284 -21.47208 -20.43192 -19.73400 -19.26093 -17.97521 -17.60977 -17.20705 -16.91074 -16.14401 -15.99815 -15.84106 -15.73507 -15.54657 -15.07362 -14.83586 -14.55701 -14.44907 -14.39934 -14.21059 -14.06300 -13.94888 -13.63015 -13.51319 -13.25774 -13.17167 -13.04703 -12.89806 -12.46072 -12.29822 -12.14531 -12.03700 -11.85201 -11.77191 -11.68482 -11.17587 -10.98728 -10.48983 -10.18184 -9.73292 -9.67125 -9.58456 -9.29261 -7.98786 -5.33952 -0.56376 0.24096 0.58541 0.63690 0.65468 1.02694 1.35704 1.40842 1.42014 1.47760 2.20801 2.49333 3.01391 3.26912 3.33606 3.49048 3.72362 3.81487 3.96492 4.12835 4.13692 4.19619 4.26924 4.34050 4.34366 4.40772 4.45280 4.46478 4.58235 4.66492 4.69040 4.78752 4.82329 4.92622 5.00302 5.06118 5.20333 5.30433 5.33891 5.48433 5.70499 5.73349 5.78736 5.90168 6.23645 6.26889 6.40530 7.03703 7.08357 7.80031 8.00056 9.22287 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.003924 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.489811 B = 7133.811560 C = 8784.043516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.151 3.849 3 N -0.493 5.493 4 S 0.311 5.689 5 C -0.131 4.131 6 C -0.092 4.092 7 C -0.239 4.239 8 C 0.598 3.402 9 O -0.565 6.565 10 N -0.701 5.701 11 C 0.128 3.872 12 C 0.209 3.791 13 H 0.073 0.927 14 N -0.735 5.735 15 C -0.216 4.216 16 H 0.059 0.941 17 C -0.055 4.055 18 N -0.981 5.981 19 Si 0.940 3.060 20 H -0.289 1.289 21 H -0.301 1.301 22 H -0.241 1.241 23 C -0.100 4.100 24 C -0.112 4.112 25 C -0.136 4.136 26 C -0.132 4.132 27 C -0.128 4.128 28 C -0.126 4.126 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.412 0.588 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.366 0.634 39 H 0.255 0.745 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 2.934 15.210 15.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 N -0.315 5.315 4 S 0.467 5.533 5 C -0.262 4.262 6 C -0.151 4.151 7 C -0.260 4.260 8 C 0.382 3.618 9 O -0.444 6.444 10 N -0.352 5.352 11 C 0.004 3.996 12 C 0.100 3.900 13 H 0.091 0.909 14 N -0.378 5.378 15 C -0.347 4.347 16 H 0.077 0.923 17 C -0.247 4.247 18 N -0.632 5.632 19 Si 0.769 3.231 20 H -0.215 1.215 21 H -0.228 1.228 22 H -0.165 1.165 23 C -0.103 4.103 24 C -0.130 4.130 25 C -0.154 4.154 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.144 4.144 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.248 0.752 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.200 0.800 39 H 0.064 0.936 40 H 0.123 0.877 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.582 4.677 15.731 16.613 hybrid contribution 0.569 -1.650 -0.620 1.852 sum -2.012 3.027 15.110 15.542 Atomic orbital electron populations 1.20730 0.84730 1.04843 1.04757 1.21509 0.99999 0.86491 0.94673 1.76291 1.01388 1.26433 1.27387 1.83784 1.09304 0.94081 1.66089 1.26423 0.97313 1.03770 0.98690 1.20581 0.95283 0.94618 1.04609 1.20214 0.93219 0.95524 1.17006 1.17367 0.77180 0.83730 0.83567 1.90779 1.54816 1.66776 1.32033 1.46013 1.61010 1.19524 1.08652 1.21590 0.98780 0.83044 0.96204 1.19506 0.88262 0.91835 0.90390 0.90885 1.42674 1.03001 1.88748 1.03388 1.18868 0.93208 1.39932 0.82644 0.92295 1.25341 1.00671 1.02839 0.95839 1.69869 1.26315 1.59414 1.07582 0.85634 0.80540 0.77512 0.79463 1.21547 1.22820 1.16528 1.20738 0.94028 0.96699 0.98861 1.20978 0.99281 0.93094 0.99680 1.21365 0.96564 0.96640 1.00849 1.21400 0.93248 1.00030 1.00278 1.21405 1.00783 0.92347 1.00008 1.21276 0.94644 0.98099 1.00425 0.88574 0.88542 0.89927 0.88778 0.87108 0.90441 0.75158 0.89328 0.91774 0.80036 0.93608 0.87661 0.85145 0.84021 0.83868 0.84958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 9.96 71.24 0.71 -1.10 16 2 C 0.15 3.86 6.75 43.14 0.29 4.16 16 3 N -0.49 -12.96 11.97 -51.08 -0.61 -13.58 16 4 S 0.31 6.86 23.69 -56.49 -1.34 5.53 16 5 C -0.13 -3.15 6.67 25.61 0.17 -2.98 16 6 C -0.09 -1.84 10.19 71.24 0.73 -1.12 16 7 C -0.24 -6.47 5.61 -20.72 -0.12 -6.59 16 8 C 0.60 17.60 5.77 86.64 0.50 18.10 16 9 O -0.56 -19.71 17.11 -4.06 -0.07 -19.78 16 10 N -0.70 -19.75 5.38 -466.47 -2.51 -22.26 16 11 C 0.13 3.62 5.21 86.38 0.45 4.07 16 12 C 0.21 6.80 2.65 44.25 0.12 6.91 16 13 H 0.07 2.41 7.94 -2.39 -0.02 2.39 16 14 N -0.74 -29.38 3.59 -326.48 -1.17 -30.55 16 15 C -0.22 -11.01 10.40 84.04 0.87 -10.14 16 16 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 17 C -0.06 -3.02 5.50 84.86 0.47 -2.56 16 18 N -0.98 -59.93 13.97 21.65 0.30 -59.63 16 19 Si 0.94 42.01 27.74 68.60 1.90 43.92 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.24 -9.20 6.52 99.48 0.65 -8.55 16 23 C -0.10 -3.22 4.92 -19.86 -0.10 -3.32 16 24 C -0.11 -3.68 9.33 22.27 0.21 -3.47 16 25 C -0.14 -3.86 10.05 22.27 0.22 -3.64 16 26 C -0.13 -3.28 10.05 22.27 0.22 -3.05 16 27 C -0.13 -3.17 10.05 22.27 0.22 -2.94 16 28 C -0.13 -3.54 9.67 22.27 0.22 -3.33 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.65 7.39 -2.38 -0.02 1.63 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.69 7.85 -2.39 -0.02 1.67 16 35 H 0.41 11.96 8.12 -92.71 -0.75 11.20 16 36 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.37 14.31 5.66 -92.71 -0.52 13.78 16 39 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.11 3.61 7.71 -2.91 -0.02 3.58 16 41 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 42 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.13 3.20 8.04 -2.91 -0.02 3.17 16 Total: -1.00 -68.41 389.06 1.39 -67.02 By element: Atomic # 1 Polarization: 40.63 SS G_CDS: -0.30 Total: 40.33 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 5.19 Total: -11.00 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -3.99 Total: -126.01 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.07 Total: -19.78 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.90 Total: 43.92 kcal Atomic # 16 Polarization: 6.86 SS G_CDS: -1.34 Total: 5.53 kcal Total: -68.41 1.39 -67.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664603634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.511 kcal (2) G-P(sol) polarization free energy of solvation -68.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds