Wall clock time and date at job start Wed Apr 1 2020 04:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53003 * 109.46668 * 2 1 4 4 N 1.46498 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00030 * 179.72577 * 4 3 2 6 6 H 1.08005 * 120.00221 * 0.28032 * 5 4 3 7 7 C 1.38817 * 120.00215 * 180.28005 * 5 4 3 8 8 N 1.31619 * 120.00063 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99889 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47407 * 89.99959 * 9 7 5 11 11 H 1.48498 * 109.47139 * 210.00113 * 9 7 5 12 12 H 1.48499 * 109.47192 * 329.99984 * 9 7 5 13 13 N 1.46495 * 109.46883 * 120.00087 * 2 1 3 14 14 C 1.34780 * 120.00169 * 298.26429 * 13 2 1 15 15 O 1.21616 * 119.99849 * 5.13338 * 14 13 2 16 16 C 1.47381 * 120.00055 * 185.13267 * 14 13 2 17 17 N 1.29689 * 121.82932 * 0.02875 * 16 14 13 18 18 S 1.56001 * 111.74359 * 179.97438 * 17 16 14 19 19 C 1.76252 * 97.56017 * 0.02562 * 18 17 16 20 20 C 1.38699 * 134.18784 * 180.02562 * 19 18 17 21 21 C 1.36797 * 119.62953 * 179.97438 * 20 19 18 22 22 C 1.38911 * 120.30952 * 0.02562 * 21 20 19 23 23 C 1.36327 * 121.03307 * 359.97438 * 22 21 20 24 24 C 1.40417 * 119.96349 * 359.73048 * 23 22 21 25 25 C 1.52995 * 109.47216 * 240.00230 * 2 1 3 26 26 C 1.52999 * 117.49941 * 11.97298 * 25 2 1 27 27 C 1.53000 * 60.00071 * 252.51133 * 26 25 2 28 28 H 1.09001 * 109.46744 * 60.00281 * 1 2 3 29 29 H 1.08994 * 109.46690 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46857 * 299.99610 * 1 2 3 31 31 H 1.09004 * 109.46692 * 60.00436 * 3 2 1 32 32 H 1.08996 * 109.47142 * 300.00073 * 3 2 1 33 33 H 0.97003 * 120.00204 * 0.02562 * 4 3 2 34 34 H 0.96998 * 119.99845 * 179.97438 * 8 7 5 35 35 H 0.97004 * 119.99851 * 118.26821 * 13 2 1 36 36 H 1.07999 * 120.18443 * 359.93948 * 20 19 18 37 37 H 1.08005 * 119.84805 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.48270 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.02055 * 180.02562 * 23 22 21 40 40 H 1.08995 * 115.55100 * 157.67626 * 25 2 1 41 41 H 1.09005 * 117.49959 * 359.97438 * 26 25 2 42 42 H 1.09008 * 117.50111 * 145.01990 * 26 25 2 43 43 H 1.09007 * 117.49419 * 252.51298 * 27 26 25 44 44 H 1.08994 * 117.50064 * 107.49400 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1896 2.6285 -0.0049 6 1 3.6497 3.5638 -0.0052 7 6 5.5778 2.6285 -0.0102 8 7 6.2359 3.7684 -0.0161 9 14 6.5118 1.0109 -0.0105 10 1 6.7540 0.5793 -1.4106 11 1 7.8120 1.1899 0.6842 12 1 5.7120 -0.0227 0.6947 13 7 2.0184 -0.6906 1.1961 14 6 1.7219 -0.2101 2.4200 15 8 0.9729 0.7411 2.5347 16 6 2.3053 -0.8375 3.6192 17 7 3.1082 -1.8527 3.5380 18 16 3.5848 -2.3266 4.9458 19 6 2.7033 -1.1367 5.9017 20 6 2.5927 -0.8777 7.2598 21 6 1.8020 0.1526 7.6896 22 6 1.1122 0.9363 6.7733 23 6 1.2066 0.6993 5.4341 24 6 2.0153 -0.3473 4.9624 25 6 2.0401 -0.7212 -1.2492 26 6 1.0239 -1.0316 -2.3501 27 6 1.5722 -2.1603 -1.4746 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6766 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9901 0.6026 0.0006 34 1 7.2058 3.7684 -0.0194 35 1 2.5551 -1.4937 1.1073 36 1 3.1273 -1.4863 7.9740 37 1 1.7130 0.3572 8.7463 38 1 0.4921 1.7465 7.1273 39 1 0.6634 1.3191 4.7361 40 1 3.0545 -0.4677 -1.5572 41 1 -0.0081 -0.7224 -2.1842 42 1 1.3697 -0.9823 -3.3827 43 1 2.2787 -2.8535 -1.9313 44 1 0.9010 -2.5934 -0.7330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665999036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:01 Heat of formation + Delta-G solvation = 71.595911 kcal Electronic energy + Delta-G solvation = -28303.707460 eV Core-core repulsion = 24542.196567 eV Total energy + Delta-G solvation = -3761.510893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.75730 -39.69159 -37.91569 -36.84361 -34.83369 -33.56518 -31.42144 -31.24571 -30.70146 -30.02734 -26.34478 -25.87219 -23.78662 -23.18595 -22.43788 -22.20324 -21.83977 -20.13480 -19.07591 -18.65334 -17.68819 -17.62486 -16.56473 -15.82543 -15.45101 -15.36984 -15.18718 -14.95381 -14.59726 -14.26961 -14.08684 -13.92819 -13.78832 -13.05849 -12.80473 -12.48640 -12.37388 -12.30077 -12.26411 -12.04441 -11.88070 -11.73460 -11.29197 -11.12320 -10.98849 -10.87152 -10.82154 -10.78409 -10.30177 -10.20262 -9.93795 -9.93220 -9.55704 -9.52039 -9.21639 -8.81900 -8.75516 -7.99611 -7.13187 -5.71050 -3.04481 0.25466 0.95080 1.20061 1.57152 1.66659 3.07222 3.24938 3.37962 3.41453 3.45909 3.60465 3.94959 4.22510 4.51846 4.63123 4.66545 4.75022 4.93173 4.97852 5.06498 5.09127 5.21873 5.27230 5.30557 5.32142 5.59649 5.60414 5.68986 5.74236 5.83708 5.87003 5.92336 5.96442 5.98327 6.08421 6.16588 6.21534 6.29920 6.33659 6.45723 6.54609 6.64419 6.80146 6.97652 7.73399 8.06604 8.35683 8.48151 9.27754 10.00165 10.20832 11.47878 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.004480 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.472380 B = 6248.356923 C = 7398.464559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.197 3.803 3 C 0.149 3.851 4 N -0.751 5.751 5 C -0.234 4.234 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.936 5.936 9 Si 0.878 3.122 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.278 1.278 13 N -0.694 5.694 14 C 0.598 3.402 15 O -0.517 6.517 16 C 0.099 3.901 17 N -0.489 5.489 18 S 0.376 5.624 19 C -0.199 4.199 20 C -0.077 4.077 21 C -0.090 4.090 22 C -0.121 4.121 23 C -0.037 4.037 24 C -0.086 4.086 25 C -0.156 4.156 26 C -0.167 4.167 27 C -0.183 4.183 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.036 0.964 33 H 0.359 0.641 34 H 0.258 0.742 35 H 0.404 0.596 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.150 0.850 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.475 -15.014 11.324 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.112 3.888 3 C 0.021 3.979 4 N -0.397 5.397 5 C -0.364 4.364 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.584 5.584 9 Si 0.708 3.292 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.204 1.204 13 N -0.344 5.344 14 C 0.379 3.621 15 O -0.392 6.392 16 C -0.089 4.089 17 N -0.315 5.315 18 S 0.535 5.465 19 C -0.320 4.320 20 C -0.099 4.099 21 C -0.113 4.113 22 C -0.141 4.141 23 C -0.059 4.059 24 C -0.096 4.096 25 C -0.175 4.175 26 C -0.204 4.204 27 C -0.220 4.220 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.192 0.808 34 H 0.068 0.932 35 H 0.239 0.761 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.167 0.833 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.583 -15.845 10.764 22.385 hybrid contribution 0.329 -0.065 0.105 0.351 sum -11.254 -15.910 10.868 22.313 Atomic orbital electron populations 1.22294 0.94100 1.01843 1.03880 1.20190 0.93695 0.93213 0.81713 1.21046 0.85158 0.91457 1.00256 1.42629 1.00758 1.05156 1.91129 1.19068 0.89443 0.85879 1.42013 0.89207 1.24616 0.96069 0.95973 1.02510 1.69694 1.06839 1.23697 1.58208 0.86634 0.79905 0.84933 0.77693 1.21123 1.21807 1.20444 1.45821 1.54127 1.29912 1.04580 1.16952 0.80749 0.82752 0.81680 1.90709 1.35888 1.26847 1.85721 1.22037 0.98142 0.94098 0.94641 1.71434 1.15916 1.17056 1.27055 1.81315 1.45528 1.31185 0.88468 1.24269 1.04856 1.03626 0.99255 1.19901 0.99755 0.98631 0.91586 1.21061 0.95647 0.94406 1.00136 1.20922 1.00281 1.00159 0.92735 1.20877 0.94935 0.94096 0.96006 1.19604 1.01147 0.99040 0.89847 1.22535 1.00715 0.97334 0.96892 1.23065 0.99158 1.02379 0.95805 1.22964 1.04059 0.91420 1.03545 0.91233 0.92819 0.89964 0.92899 0.94594 0.80836 0.93212 0.76066 0.84962 0.84877 0.84867 0.83259 0.86527 0.87957 0.88683 0.88874 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 7.06 37.16 0.26 -1.99 16 2 C 0.20 3.20 0.54 -131.82 -0.07 3.13 16 3 C 0.15 3.09 4.94 -4.04 -0.02 3.07 16 4 N -0.75 -18.53 4.83 -59.91 -0.29 -18.82 16 5 C -0.23 -6.88 10.47 -15.06 -0.16 -7.04 16 6 H 0.09 2.84 8.06 -52.48 -0.42 2.42 16 7 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 8 N -0.94 -30.29 13.97 55.49 0.78 -29.52 16 9 Si 0.88 23.01 27.74 -169.99 -4.71 18.29 16 10 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 12 H -0.28 -6.99 6.52 56.52 0.37 -6.62 16 13 N -0.69 -11.48 4.72 -48.68 -0.23 -11.71 16 14 C 0.60 10.63 7.21 -12.54 -0.09 10.53 16 15 O -0.52 -9.80 11.24 5.26 0.06 -9.74 16 16 C 0.10 1.65 6.82 -81.99 -0.56 1.09 16 17 N -0.49 -7.62 10.50 28.25 0.30 -7.32 16 18 S 0.38 4.66 23.36 -107.50 -2.51 2.15 16 19 C -0.20 -2.55 6.73 -38.49 -0.26 -2.81 16 20 C -0.08 -0.76 10.03 -39.93 -0.40 -1.16 16 21 C -0.09 -0.80 10.00 -39.85 -0.40 -1.20 16 22 C -0.12 -1.25 9.93 -40.02 -0.40 -1.65 16 23 C -0.04 -0.50 9.57 -39.45 -0.38 -0.88 16 24 C -0.09 -1.29 6.10 -105.09 -0.64 -1.93 16 25 C -0.16 -2.30 4.87 -90.62 -0.44 -2.74 16 26 C -0.17 -1.97 9.62 -26.73 -0.26 -2.23 16 27 C -0.18 -2.13 9.71 -26.73 -0.26 -2.39 16 28 H 0.07 0.87 6.82 -51.93 -0.35 0.52 16 29 H 0.05 0.66 7.00 -51.93 -0.36 0.29 16 30 H 0.08 1.27 6.12 -51.93 -0.32 0.95 16 31 H 0.05 1.21 6.22 -51.93 -0.32 0.89 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.36 8.68 4.49 -40.82 -0.18 8.49 16 34 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 35 H 0.40 6.33 7.83 -40.82 -0.32 6.01 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.15 2.12 6.64 -52.49 -0.35 1.77 16 40 H 0.12 2.00 7.09 -51.93 -0.37 1.64 16 41 H 0.10 1.10 5.87 -51.93 -0.31 0.80 16 42 H 0.09 1.06 8.14 -51.92 -0.42 0.63 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.03 7.39 -51.93 -0.38 0.64 16 LS Contribution 366.63 15.07 5.53 5.53 Total: -1.00 -34.55 366.63 -10.65 -45.20 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -5.39 Total: 14.13 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -4.16 Total: -8.18 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: 0.55 Total: -67.37 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.06 Total: -9.74 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.71 Total: 18.29 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -2.51 Total: 2.15 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.55 -10.65 -45.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665999036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.791 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds