Wall clock time and date at job start Wed Apr 1 2020 04:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53003 * 109.46668 * 2 1 4 4 N 1.46498 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00030 * 179.72577 * 4 3 2 6 6 H 1.08005 * 120.00221 * 0.28032 * 5 4 3 7 7 C 1.38817 * 120.00215 * 180.28005 * 5 4 3 8 8 N 1.31619 * 120.00063 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99889 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47407 * 89.99959 * 9 7 5 11 11 H 1.48498 * 109.47139 * 210.00113 * 9 7 5 12 12 H 1.48499 * 109.47192 * 329.99984 * 9 7 5 13 13 N 1.46495 * 109.46883 * 120.00087 * 2 1 3 14 14 C 1.34780 * 120.00169 * 298.26429 * 13 2 1 15 15 O 1.21616 * 119.99849 * 5.13338 * 14 13 2 16 16 C 1.47381 * 120.00055 * 185.13267 * 14 13 2 17 17 N 1.29689 * 121.82932 * 0.02875 * 16 14 13 18 18 S 1.56001 * 111.74359 * 179.97438 * 17 16 14 19 19 C 1.76252 * 97.56017 * 0.02562 * 18 17 16 20 20 C 1.38699 * 134.18784 * 180.02562 * 19 18 17 21 21 C 1.36797 * 119.62953 * 179.97438 * 20 19 18 22 22 C 1.38911 * 120.30952 * 0.02562 * 21 20 19 23 23 C 1.36327 * 121.03307 * 359.97438 * 22 21 20 24 24 C 1.40417 * 119.96349 * 359.73048 * 23 22 21 25 25 C 1.52995 * 109.47216 * 240.00230 * 2 1 3 26 26 C 1.52999 * 117.49941 * 11.97298 * 25 2 1 27 27 C 1.53000 * 60.00071 * 252.51133 * 26 25 2 28 28 H 1.09001 * 109.46744 * 60.00281 * 1 2 3 29 29 H 1.08994 * 109.46690 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46857 * 299.99610 * 1 2 3 31 31 H 1.09004 * 109.46692 * 60.00436 * 3 2 1 32 32 H 1.08996 * 109.47142 * 300.00073 * 3 2 1 33 33 H 0.97003 * 120.00204 * 0.02562 * 4 3 2 34 34 H 0.96998 * 119.99845 * 179.97438 * 8 7 5 35 35 H 0.97004 * 119.99851 * 118.26821 * 13 2 1 36 36 H 1.07999 * 120.18443 * 359.93948 * 20 19 18 37 37 H 1.08005 * 119.84805 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.48270 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.02055 * 180.02562 * 23 22 21 40 40 H 1.08995 * 115.55100 * 157.67626 * 25 2 1 41 41 H 1.09005 * 117.49959 * 359.97438 * 26 25 2 42 42 H 1.09008 * 117.50111 * 145.01990 * 26 25 2 43 43 H 1.09007 * 117.49419 * 252.51298 * 27 26 25 44 44 H 1.08994 * 117.50064 * 107.49400 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1896 2.6285 -0.0049 6 1 3.6497 3.5638 -0.0052 7 6 5.5778 2.6285 -0.0102 8 7 6.2359 3.7684 -0.0161 9 14 6.5118 1.0109 -0.0105 10 1 6.7540 0.5793 -1.4106 11 1 7.8120 1.1899 0.6842 12 1 5.7120 -0.0227 0.6947 13 7 2.0184 -0.6906 1.1961 14 6 1.7219 -0.2101 2.4200 15 8 0.9729 0.7411 2.5347 16 6 2.3053 -0.8375 3.6192 17 7 3.1082 -1.8527 3.5380 18 16 3.5848 -2.3266 4.9458 19 6 2.7033 -1.1367 5.9017 20 6 2.5927 -0.8777 7.2598 21 6 1.8020 0.1526 7.6896 22 6 1.1122 0.9363 6.7733 23 6 1.2066 0.6993 5.4341 24 6 2.0153 -0.3473 4.9624 25 6 2.0401 -0.7212 -1.2492 26 6 1.0239 -1.0316 -2.3501 27 6 1.5722 -2.1603 -1.4746 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6766 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9901 0.6026 0.0006 34 1 7.2058 3.7684 -0.0194 35 1 2.5551 -1.4937 1.1073 36 1 3.1273 -1.4863 7.9740 37 1 1.7130 0.3572 8.7463 38 1 0.4921 1.7465 7.1273 39 1 0.6634 1.3191 4.7361 40 1 3.0545 -0.4677 -1.5572 41 1 -0.0081 -0.7224 -2.1842 42 1 1.3697 -0.9823 -3.3827 43 1 2.2787 -2.8535 -1.9313 44 1 0.9010 -2.5934 -0.7330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665999036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:00 Heat of formation + Delta-G solvation = 48.683873 kcal Electronic energy + Delta-G solvation = -28304.701000 eV Core-core repulsion = 24542.196567 eV Total energy + Delta-G solvation = -3762.504434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.92559 -40.77790 -39.04515 -37.90753 -36.56396 -35.12093 -33.41829 -32.11979 -31.77514 -31.40977 -27.86008 -27.23964 -25.09740 -24.09853 -23.93320 -23.34670 -23.11200 -21.32570 -20.43094 -19.85769 -19.57879 -18.78952 -17.52476 -16.91581 -16.83321 -16.65155 -16.49654 -16.21742 -15.97460 -15.49279 -15.37457 -15.29697 -14.80525 -14.78273 -14.45788 -13.95599 -13.89626 -13.46069 -13.38087 -13.24095 -13.12739 -12.92682 -12.71458 -12.45501 -12.39778 -12.30924 -12.08397 -12.06203 -11.89474 -11.75128 -11.32699 -11.16041 -11.02479 -10.87625 -10.73531 -10.13468 -10.10222 -9.31643 -8.93375 -8.08506 -5.40054 -0.78805 0.04092 0.25931 0.57288 0.61456 1.25702 1.29593 1.36293 1.86300 2.08211 2.39644 2.64860 2.93733 3.20982 3.23172 3.46769 3.54242 3.67309 3.77681 3.90436 4.05831 4.08098 4.13146 4.30288 4.32281 4.38885 4.50889 4.54504 4.72459 4.77770 4.81057 4.82977 4.91955 4.95934 4.99178 5.04660 5.13776 5.20969 5.28117 5.34229 5.38412 5.45531 5.53452 5.69680 5.83355 6.15137 6.44982 7.01530 7.06431 7.77284 7.98750 9.13679 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.004480 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.472380 B = 6248.356923 C = 7398.464559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.205 3.795 3 C 0.148 3.852 4 N -0.747 5.747 5 C -0.229 4.229 6 H 0.052 0.948 7 C -0.060 4.060 8 N -0.982 5.982 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.293 1.293 12 H -0.264 1.264 13 N -0.691 5.691 14 C 0.588 3.412 15 O -0.541 6.541 16 C 0.067 3.933 17 N -0.511 5.511 18 S 0.426 5.574 19 C -0.213 4.213 20 C -0.073 4.073 21 C -0.079 4.079 22 C -0.112 4.112 23 C -0.070 4.070 24 C -0.116 4.116 25 C -0.186 4.186 26 C -0.153 4.153 27 C -0.159 4.159 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.034 0.966 33 H 0.364 0.636 34 H 0.258 0.742 35 H 0.408 0.592 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.159 0.841 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.811 -18.182 12.982 25.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.120 3.880 3 C 0.021 3.979 4 N -0.393 5.393 5 C -0.360 4.360 6 H 0.070 0.930 7 C -0.251 4.251 8 N -0.633 5.633 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.220 1.220 12 H -0.189 1.189 13 N -0.342 5.342 14 C 0.370 3.630 15 O -0.418 6.418 16 C -0.120 4.120 17 N -0.339 5.339 18 S 0.587 5.413 19 C -0.334 4.334 20 C -0.095 4.095 21 C -0.102 4.102 22 C -0.131 4.131 23 C -0.092 4.092 24 C -0.126 4.126 25 C -0.205 4.205 26 C -0.191 4.191 27 C -0.196 4.196 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.197 0.803 34 H 0.067 0.933 35 H 0.244 0.756 36 H 0.187 0.813 37 H 0.195 0.805 38 H 0.177 0.823 39 H 0.145 0.855 40 H 0.108 0.892 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.956 -19.049 12.412 25.688 hybrid contribution 0.383 0.999 -0.272 1.104 sum -11.573 -18.051 12.140 24.640 Atomic orbital electron populations 1.22219 0.92079 1.03244 1.03639 1.20048 0.95022 0.90272 0.82653 1.21109 0.82923 0.95157 0.98721 1.42538 1.02287 1.03685 1.90764 1.19024 0.89805 0.86311 1.40896 0.92956 1.25399 0.96985 0.99859 1.02862 1.69875 1.07096 1.26355 1.59955 0.85496 0.77997 0.80450 0.78421 1.19540 1.22004 1.18919 1.45848 1.54058 1.29898 1.04391 1.17328 0.80545 0.82591 0.82504 1.90686 1.36982 1.27887 1.86254 1.21973 0.99801 0.95376 0.94859 1.71176 1.15934 1.16985 1.29805 1.80931 1.43867 1.29793 0.86749 1.24557 1.04997 1.03556 1.00290 1.20461 0.99374 0.98902 0.90770 1.21579 0.93762 0.92925 1.01920 1.21310 0.99760 1.00519 0.91536 1.20890 0.96281 0.94701 0.97367 1.19768 1.02631 1.00365 0.89807 1.22317 1.00358 1.00368 0.97412 1.23206 0.98926 1.01422 0.95500 1.23045 1.03571 0.89944 1.03042 0.89754 0.90469 0.91940 0.95512 0.94764 0.80266 0.93310 0.75554 0.81343 0.80535 0.82300 0.85474 0.89151 0.86630 0.87755 0.87560 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 7.06 71.99 0.51 -3.68 16 2 C 0.21 6.72 0.54 3.61 0.00 6.72 16 3 C 0.15 6.44 4.94 86.38 0.43 6.86 16 4 N -0.75 -38.06 4.83 -343.44 -1.66 -39.72 16 5 C -0.23 -14.08 10.47 84.04 0.88 -13.20 16 6 H 0.05 3.54 8.06 -2.91 -0.02 3.51 16 7 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 8 N -0.98 -65.67 13.97 21.65 0.30 -65.37 16 9 Si 0.95 48.33 27.74 68.60 1.90 50.24 16 10 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.29 -14.99 7.11 99.48 0.71 -14.29 16 12 H -0.26 -12.66 6.52 99.48 0.65 -12.01 16 13 N -0.69 -23.26 4.72 -426.17 -2.01 -25.27 16 14 C 0.59 21.90 7.21 86.65 0.62 22.52 16 15 O -0.54 -22.04 11.24 -4.08 -0.05 -22.09 16 16 C 0.07 2.30 6.82 43.85 0.30 2.60 16 17 N -0.51 -15.86 10.50 -64.55 -0.68 -16.54 16 18 S 0.43 9.96 23.36 -56.49 -1.32 8.64 16 19 C -0.21 -5.13 6.73 22.98 0.15 -4.98 16 20 C -0.07 -1.20 10.03 22.04 0.22 -0.98 16 21 C -0.08 -1.12 10.00 22.09 0.22 -0.90 16 22 C -0.11 -2.13 9.93 21.98 0.22 -1.91 16 23 C -0.07 -1.95 9.57 22.35 0.21 -1.74 16 24 C -0.12 -3.55 6.10 -20.17 -0.12 -3.67 16 25 C -0.19 -5.27 4.87 -10.80 -0.05 -5.33 16 26 C -0.15 -3.24 9.62 30.59 0.29 -2.95 16 27 C -0.16 -3.26 9.71 30.59 0.30 -2.96 16 28 H 0.08 2.01 6.82 -2.39 -0.02 2.00 16 29 H 0.08 1.74 7.00 -2.39 -0.02 1.72 16 30 H 0.06 1.98 6.12 -2.39 -0.01 1.97 16 31 H 0.03 1.32 6.22 -2.38 -0.01 1.30 16 32 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.36 17.77 4.49 -92.71 -0.42 17.35 16 34 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 35 H 0.41 12.76 7.83 -92.71 -0.73 12.03 16 36 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.13 3.99 6.64 -2.91 -0.02 3.97 16 40 H 0.09 3.07 7.09 -2.39 -0.02 3.06 16 41 H 0.12 2.14 5.87 -2.38 -0.01 2.13 16 42 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 43 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 44 H 0.10 1.95 7.39 -2.39 -0.02 1.93 16 Total: -1.00 -80.12 366.63 1.01 -79.11 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -0.13 Total: 37.83 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 4.65 Total: -6.84 kcal Atomic # 7 Polarization: -142.85 SS G_CDS: -4.05 Total: -146.89 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.05 Total: -22.09 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.90 Total: 50.24 kcal Atomic # 16 Polarization: 9.96 SS G_CDS: -1.32 Total: 8.64 kcal Total: -80.12 1.01 -79.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665999036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.798 kcal (2) G-P(sol) polarization free energy of solvation -80.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds