Wall clock time and date at job start Wed Apr 1 2020 03:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30702 * 122.10603 * 2 1 4 4 C 1.30565 * 115.90882 * 180.02562 * 3 2 1 5 5 C 1.47256 * 125.54322 * 179.97438 * 4 3 2 6 6 O 1.21623 * 119.99845 * 0.02562 * 5 4 3 7 7 N 1.34769 * 120.00164 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00237 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46998 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.47395 * 65.00358 * 9 8 7 11 11 N 1.46493 * 109.47189 * 304.99881 * 9 8 7 12 12 C 1.36940 * 120.00317 * 155.00273 * 11 9 8 13 13 H 1.07999 * 119.99727 * 359.97438 * 12 11 9 14 14 C 1.38806 * 120.00128 * 180.02562 * 12 11 9 15 15 N 1.31615 * 120.00100 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99731 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47243 * 59.99623 * 16 14 12 18 18 H 1.48508 * 109.47083 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47192 * 299.99550 * 16 14 12 20 20 C 1.50699 * 109.46610 * 185.00081 * 9 8 7 21 21 C 1.38233 * 120.00138 * 79.72985 * 20 9 8 22 22 C 1.38243 * 119.99912 * 179.78517 * 21 20 9 23 23 C 1.38237 * 119.99625 * 0.43883 * 22 21 20 24 24 C 1.38230 * 120.00550 * 359.81117 * 23 22 21 25 25 C 1.38238 * 119.99895 * 259.99670 * 20 9 8 26 26 S 1.76098 * 108.91425 * 0.26781 * 4 3 2 27 27 C 1.34235 * 122.11526 * 180.02562 * 2 1 3 28 28 C 1.50707 * 125.44863 * 359.97438 * 27 2 1 29 29 H 1.08995 * 109.47514 * 89.97928 * 1 2 3 30 30 H 1.09006 * 109.46415 * 209.97064 * 1 2 3 31 31 H 1.08991 * 109.47032 * 329.96837 * 1 2 3 32 32 H 0.97010 * 119.99854 * 0.02562 * 7 5 4 33 33 H 1.08993 * 109.47452 * 60.00368 * 8 7 5 34 34 H 1.09000 * 109.47175 * 300.00158 * 8 7 5 35 35 H 0.97003 * 120.00120 * 335.00451 * 11 9 8 36 36 H 0.97006 * 119.99764 * 180.02562 * 15 14 12 37 37 H 1.07995 * 120.00256 * 359.97438 * 21 20 9 38 38 H 1.07997 * 119.99849 * 180.27025 * 22 21 20 39 39 H 1.07999 * 119.99259 * 179.83654 * 23 22 21 40 40 H 1.07999 * 120.00228 * 179.97438 * 24 23 22 41 41 H 1.08005 * 119.99861 * 359.97438 * 25 20 9 42 42 H 1.09003 * 109.47196 * 90.00368 * 28 27 2 43 43 H 1.08998 * 109.46745 * 209.99781 * 28 27 2 44 44 H 1.08996 * 109.46881 * 330.00068 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2016 1.1071 0.0000 4 6 3.4997 0.9662 -0.0005 5 6 4.4800 2.0650 -0.0012 6 8 4.0989 3.2199 -0.0008 7 7 5.7995 1.7908 -0.0012 8 6 6.7749 2.8839 -0.0012 9 6 8.1908 2.3040 -0.0018 10 1 8.3622 1.7647 -0.9334 11 7 8.3429 1.3856 1.1293 12 6 9.2738 0.3827 1.0767 13 1 9.8956 0.2686 0.2011 14 6 9.4175 -0.4878 2.1482 15 7 8.6593 -0.3490 3.2151 16 14 10.6879 -1.8555 2.0766 17 1 12.0406 -1.2662 1.9091 18 1 10.6426 -2.6396 3.3370 19 1 10.3907 -2.7475 0.9272 20 6 9.1920 3.4235 0.1219 21 6 9.4534 3.9835 1.3584 22 6 10.3751 5.0075 1.4726 23 6 11.0287 5.4774 0.3488 24 6 10.7636 4.9210 -0.8884 25 6 9.8451 3.8941 -1.0019 26 16 3.8873 -0.7516 -0.0089 27 6 2.2206 -1.1369 -0.0005 28 6 1.6454 -2.5299 -0.0006 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3632 -0.8903 0.5134 31 1 -0.3633 0.8896 0.5143 32 1 6.1035 0.8695 -0.0011 33 1 6.6335 3.4971 0.8887 34 1 6.6334 3.4971 -0.8912 35 1 7.7841 1.4879 1.9156 36 1 8.7600 -0.9572 3.9641 37 1 8.9397 3.6191 2.2358 38 1 10.5825 5.4420 2.4393 39 1 11.7469 6.2792 0.4377 40 1 11.2740 5.2885 -1.7664 41 1 9.6380 3.4592 -1.9686 42 1 1.5064 -2.8656 -1.0283 43 1 2.3296 -3.2055 0.5128 44 1 0.6844 -2.5262 0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691799414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:44 Heat of formation + Delta-G solvation = 42.314729 kcal Electronic energy + Delta-G solvation = -26859.640490 eV Core-core repulsion = 23096.859869 eV Total energy + Delta-G solvation = -3762.780621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.26220 -39.28629 -38.64729 -35.95284 -33.71562 -33.36203 -32.06706 -30.43067 -30.00088 -29.60180 -28.19549 -26.13795 -24.87810 -23.65262 -22.73984 -21.95341 -20.75782 -20.08600 -18.90896 -18.37972 -17.47269 -16.99244 -16.36390 -15.67821 -15.63138 -15.16348 -14.74841 -14.49931 -14.44042 -14.16771 -13.78764 -13.44219 -13.30147 -13.24949 -13.12977 -13.00963 -12.88102 -12.80732 -12.53971 -12.27648 -12.17695 -11.98591 -11.21315 -11.16655 -10.98002 -10.88493 -10.75501 -10.49243 -10.32055 -10.21173 -9.83919 -9.57281 -9.45925 -9.12080 -8.92833 -8.61786 -8.42421 -8.21855 -7.18246 -5.90163 -3.22219 0.23731 1.16509 1.59794 1.83781 1.91010 2.33430 3.02943 3.33663 3.35812 3.41725 3.42299 4.27216 4.39525 4.47255 4.65970 4.81192 4.94179 5.16036 5.19753 5.25503 5.32232 5.38085 5.42380 5.44594 5.51237 5.56696 5.58951 5.61892 5.70870 5.73275 5.80849 6.00824 6.06392 6.10882 6.19700 6.35761 6.44563 6.60046 6.61259 6.91365 6.99909 7.25454 7.44891 7.50999 7.59994 7.75162 8.25158 8.28092 9.38661 9.87463 10.24216 11.30955 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009677 B = 0.003453 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.621314 B = 8105.974272 C =10414.757677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.045 3.955 3 N -0.399 5.399 4 C -0.004 4.004 5 C 0.593 3.407 6 O -0.512 6.512 7 N -0.702 5.702 8 C 0.122 3.878 9 C 0.197 3.803 10 H 0.068 0.932 11 N -0.715 5.715 12 C -0.246 4.246 13 H 0.071 0.929 14 C -0.003 4.003 15 N -0.927 5.927 16 Si 0.905 3.095 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.082 4.082 21 C -0.083 4.083 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.130 4.130 25 C -0.120 4.120 26 S 0.205 5.795 27 C -0.240 4.240 28 C -0.077 4.077 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.410 0.590 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 0.130 -7.952 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 N -0.115 5.115 4 C -0.280 4.280 5 C 0.374 3.626 6 O -0.387 6.387 7 N -0.356 5.356 8 C -0.002 4.002 9 C 0.086 3.914 10 H 0.085 0.915 11 N -0.356 5.356 12 C -0.377 4.377 13 H 0.089 0.911 14 C -0.200 4.200 15 N -0.574 5.574 16 Si 0.735 3.265 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.211 1.211 20 C -0.086 4.086 21 C -0.101 4.101 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.148 4.148 25 C -0.138 4.138 26 S 0.462 5.538 27 C -0.363 4.363 28 C -0.136 4.136 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.247 0.753 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.735 0.794 -7.967 11.849 hybrid contribution 0.052 -1.188 0.454 1.273 sum -8.683 -0.395 -7.512 11.488 Atomic orbital electron populations 1.20374 0.87083 1.03337 1.02841 1.20191 0.98714 0.85808 1.04620 1.66488 1.03539 1.30375 1.11097 1.27333 0.94198 0.95697 1.10795 1.16655 0.81564 0.86480 0.77909 1.90822 1.79355 1.19525 1.49043 1.45750 1.04223 1.11824 1.73770 1.21709 0.87394 0.88529 1.02559 1.19491 0.88980 0.88893 0.94001 0.91454 1.42471 1.44283 1.32347 1.16462 1.19136 1.12380 1.05040 1.01156 0.91063 1.24709 0.99407 0.99570 0.96296 1.69644 1.41486 1.39846 1.06452 0.86321 0.81456 0.81939 0.76753 1.21222 1.21695 1.21135 1.20928 0.98441 0.96175 0.93008 1.21010 0.97013 0.94325 0.97775 1.21109 0.97512 0.97841 0.98084 1.20988 1.00534 1.00544 0.93111 1.20984 0.99006 0.97658 0.97154 1.21012 0.97423 0.97272 0.98128 1.84263 1.03335 1.02743 1.63509 1.25489 0.98293 1.01808 1.10720 1.20307 1.01261 0.88850 1.03140 0.90733 0.90707 0.90530 0.75328 0.90951 0.90848 0.77815 0.93277 0.85876 0.86836 0.87080 0.86975 0.86699 0.90213 0.90698 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.02 36.00 0.36 -0.37 16 2 C 0.04 0.59 6.68 -84.48 -0.56 0.03 16 3 N -0.40 -6.64 10.57 -7.69 -0.08 -6.72 16 4 C 0.00 -0.07 7.46 -14.43 -0.11 -0.18 16 5 C 0.59 10.67 7.81 -12.60 -0.10 10.57 16 6 O -0.51 -10.68 17.07 5.26 0.09 -10.60 16 7 N -0.70 -11.71 5.38 -61.44 -0.33 -12.04 16 8 C 0.12 2.02 5.21 -4.04 -0.02 2.00 16 9 C 0.20 3.52 2.64 -69.08 -0.18 3.33 16 10 H 0.07 1.18 7.94 -51.93 -0.41 0.76 16 11 N -0.71 -15.61 3.81 -54.55 -0.21 -15.81 16 12 C -0.25 -6.13 9.92 -15.06 -0.15 -6.28 16 13 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 14 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 15 N -0.93 -25.75 13.06 55.49 0.72 -25.03 16 16 Si 0.90 21.07 29.55 -169.99 -5.02 16.04 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 C -0.08 -1.43 4.92 -104.62 -0.51 -1.94 16 21 C -0.08 -1.49 9.32 -39.58 -0.37 -1.86 16 22 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 23 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 24 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.12 -1.86 9.67 -39.58 -0.38 -2.24 16 26 S 0.21 2.75 22.28 -107.50 -2.39 0.36 16 27 C -0.24 -2.84 6.36 -35.72 -0.23 -3.07 16 28 C -0.08 -0.61 10.04 36.01 0.36 -0.25 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.53 6.60 -51.93 -0.34 0.19 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.41 6.78 7.28 -40.82 -0.30 6.48 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.39 9.18 7.80 -40.82 -0.32 8.86 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.12 2.37 7.73 -52.49 -0.41 1.96 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 41 H 0.11 1.56 8.04 -52.48 -0.42 1.14 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.52 6.65 -51.93 -0.35 0.17 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -30.98 389.93 -10.43 -41.40 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -5.89 Total: 13.98 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -3.18 Total: -7.47 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.10 Total: -59.60 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.39 Total: 0.36 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.98 -10.43 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691799414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.719 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds