Wall clock time and date at job start Wed Apr 1 2020 03:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47439 * 2 1 4 4 N 1.29422 * 124.80246 * 90.02232 * 3 2 1 5 5 C 1.30947 * 117.36060 * 179.97438 * 4 3 2 6 6 C 1.35660 * 114.19399 * 359.97438 * 5 4 3 7 7 C 1.46680 * 126.13148 * 180.02562 * 6 5 4 8 8 O 1.21683 * 120.00091 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99703 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72441 * 9 7 6 11 11 C 1.50703 * 109.47138 * 180.28062 * 10 9 7 12 12 C 1.38233 * 119.99680 * 269.72871 * 11 10 9 13 13 C 1.38240 * 120.00155 * 179.76981 * 12 11 10 14 14 C 1.38241 * 119.99430 * 0.47615 * 13 12 11 15 15 C 1.50695 * 119.99655 * 179.77268 * 14 13 12 16 16 N 1.46502 * 109.47431 * 270.02262 * 15 14 13 17 17 C 1.36936 * 120.00293 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99933 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00060 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00063 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47176 * 89.99693 * 21 19 17 23 23 H 1.48506 * 109.46863 * 209.99920 * 21 19 17 24 24 H 1.48504 * 109.47041 * 329.99363 * 21 19 17 25 25 C 1.38233 * 120.00075 * 359.79594 * 14 13 12 26 26 C 1.38231 * 120.00146 * 89.99859 * 11 10 9 27 27 S 1.70948 * 124.80220 * 270.29988 * 3 2 1 28 28 H 1.08997 * 109.47035 * 300.00110 * 1 2 3 29 29 H 1.09002 * 109.46543 * 59.99866 * 1 2 3 30 30 H 1.08997 * 109.47316 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47035 * 239.99890 * 2 1 3 32 32 H 1.09002 * 109.46543 * 120.00134 * 2 1 3 33 33 H 1.08003 * 122.90074 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 35 35 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 36 36 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 37 37 H 1.08005 * 120.00115 * 359.97438 * 12 11 10 38 38 H 1.07995 * 120.00252 * 180.25669 * 13 12 11 39 39 H 1.09000 * 109.47642 * 30.02444 * 15 14 13 40 40 H 1.08998 * 109.47269 * 150.02425 * 15 14 13 41 41 H 0.97000 * 119.99844 * 0.02562 * 16 15 14 42 42 H 0.96991 * 119.99957 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.00181 * 179.97438 * 25 14 13 44 44 H 1.07994 * 120.00283 * 0.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2791 2.1171 1.0627 5 6 2.7124 3.3411 0.8931 6 6 2.8433 3.7095 -0.4059 7 6 3.3056 5.0137 -0.8926 8 8 3.6145 5.8842 -0.1004 9 7 3.3893 5.2475 -2.2173 10 6 3.8453 6.5521 -2.7034 11 6 3.8417 6.5560 -4.2105 12 6 4.9715 6.1668 -4.9053 13 6 4.9667 6.1657 -6.2877 14 6 3.8352 6.5633 -6.9751 15 6 3.8316 6.5670 -8.4821 16 7 4.2876 7.8716 -8.9683 17 6 4.3667 8.1113 -10.3142 18 1 4.0933 7.3384 -11.0173 19 6 4.7993 9.3472 -10.7749 20 7 5.1330 10.2889 -9.9180 21 14 4.9066 9.6743 -12.6108 22 1 3.6142 10.2253 -13.0918 23 1 5.9916 10.6528 -12.8767 24 1 5.1994 8.4048 -13.3236 25 6 2.7072 6.9578 -6.2802 26 6 2.7104 6.9539 -4.8979 27 16 2.3508 2.3431 -1.4037 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9462 4.0000 1.7163 34 1 3.1434 4.5535 -2.8489 35 1 3.1764 7.3307 -2.3366 36 1 4.8561 6.7415 -2.3421 37 1 5.8570 5.8604 -4.3682 38 1 5.8481 5.8577 -6.8305 39 1 4.5004 5.7885 -8.8490 40 1 2.8209 6.3777 -8.8435 41 1 4.5335 8.5657 -8.3369 42 1 5.4356 11.1524 -10.2399 43 1 1.8233 7.2688 -6.8173 44 1 1.8292 7.2625 -4.3551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698719180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:05 Heat of formation + Delta-G solvation = 35.532762 kcal Electronic energy + Delta-G solvation = -25346.285522 eV Core-core repulsion = 21583.210813 eV Total energy + Delta-G solvation = -3763.074709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.60915 -39.75757 -38.99922 -35.64389 -34.56322 -34.40645 -32.23069 -30.77159 -30.75788 -29.87724 -27.35955 -26.29904 -24.51737 -23.39960 -22.55026 -22.54405 -21.89682 -20.60521 -19.96738 -18.83043 -17.51582 -17.29086 -16.36573 -15.97578 -15.76276 -15.39869 -15.21785 -14.93943 -14.84121 -14.60259 -14.46518 -14.31690 -13.89123 -13.41624 -13.27347 -13.21114 -13.05771 -12.75978 -12.41759 -12.31192 -12.10568 -12.03668 -11.89326 -11.76158 -11.11786 -10.89741 -10.77698 -10.66914 -10.56811 -10.17805 -10.09471 -9.99649 -9.80823 -9.50023 -9.32492 -8.93692 -8.74151 -8.50503 -6.98020 -5.79757 -3.09954 -0.22786 0.67068 1.08903 1.32432 1.58976 2.02078 2.82025 2.85838 3.41358 3.46220 3.48264 3.52255 3.94815 4.30768 4.40657 4.57468 4.58608 4.59877 4.63451 4.83901 4.89466 5.01900 5.13653 5.24010 5.26830 5.32931 5.33875 5.51055 5.53356 5.56598 5.65583 5.69244 5.79658 5.99214 6.10328 6.11956 6.15668 6.43996 6.54108 6.57515 6.63569 7.02838 7.05292 7.15787 7.17650 7.65591 7.75238 8.37811 9.49443 10.05059 10.40721 11.42614 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.001709 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.713124 B =16383.803333 C =17238.600206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.064 3.936 4 N -0.478 5.478 5 C 0.122 3.878 6 C -0.295 4.295 7 C 0.596 3.404 8 O -0.526 6.526 9 N -0.717 5.717 10 C 0.167 3.833 11 C -0.128 4.128 12 C -0.102 4.102 13 C -0.106 4.106 14 C -0.062 4.062 15 C 0.184 3.816 16 N -0.726 5.726 17 C -0.244 4.244 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.106 4.106 26 C -0.103 4.103 27 S 0.169 5.831 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.189 0.811 34 H 0.400 0.600 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.125 0.875 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.866 -21.192 21.379 31.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.211 4.211 4 N -0.192 5.192 5 C -0.035 4.035 6 C -0.419 4.419 7 C 0.380 3.620 8 O -0.404 6.404 9 N -0.369 5.369 10 C 0.044 3.956 11 C -0.129 4.129 12 C -0.121 4.121 13 C -0.125 4.125 14 C -0.063 4.063 15 C 0.057 3.943 16 N -0.371 5.371 17 C -0.375 4.375 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.125 4.125 26 C -0.121 4.121 27 S 0.425 5.575 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.206 0.794 34 H 0.235 0.765 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.143 0.857 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.796 -21.024 21.152 30.825 hybrid contribution 0.317 0.877 -0.441 1.032 sum -7.479 -20.147 20.711 29.846 Atomic orbital electron populations 1.21795 0.92971 1.03020 1.02929 1.20350 0.97106 0.87033 1.04842 1.27585 1.00517 1.01993 0.91015 1.66234 1.15690 1.06141 1.31155 1.22214 0.94559 0.91224 0.95537 1.25777 1.17636 1.00536 0.97937 1.16711 0.77741 0.84958 0.82552 1.90859 1.49427 1.44907 1.55165 1.46055 1.67891 1.16863 1.06052 1.20237 1.01054 0.84148 0.90121 1.19646 0.95197 1.04273 0.93752 1.21001 0.97343 0.99471 0.94278 1.21133 0.98096 0.99575 0.93661 1.20411 0.93125 0.95473 0.97277 1.19711 0.97759 0.90450 0.86382 1.42333 1.79781 1.10159 1.04826 1.19238 1.37594 0.97486 0.83165 0.91046 1.24769 1.01979 0.96346 0.97747 1.69673 1.50819 1.04761 1.32635 0.86164 0.77290 0.77616 0.84938 1.21664 1.21722 1.20718 1.21129 0.98707 0.99009 0.93615 1.20997 0.97346 0.99444 0.94324 1.83998 1.57796 1.04281 1.11387 0.91763 0.92165 0.90970 0.89146 0.88273 0.79410 0.76524 0.90263 0.90247 0.86257 0.85723 0.95365 0.95370 0.78042 0.93433 0.85728 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.90 37.16 0.37 -0.19 16 2 C -0.05 -0.23 6.51 -27.88 -0.18 -0.41 16 3 C 0.06 0.46 6.64 -13.29 -0.09 0.38 16 4 N -0.48 -4.48 10.51 -11.50 -0.12 -4.61 16 5 C 0.12 1.18 11.09 -18.85 -0.21 0.97 16 6 C -0.29 -2.84 6.48 -37.10 -0.24 -3.08 16 7 C 0.60 6.79 7.79 -12.85 -0.10 6.69 16 8 O -0.53 -7.65 16.87 5.20 0.09 -7.56 16 9 N -0.72 -7.12 5.54 -62.80 -0.35 -7.46 16 10 C 0.17 1.79 5.80 -5.19 -0.03 1.76 16 11 C -0.13 -1.53 5.25 -104.62 -0.55 -2.08 16 12 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 13 C -0.11 -1.58 9.70 -39.58 -0.38 -1.97 16 14 C -0.06 -1.03 5.25 -104.62 -0.55 -1.58 16 15 C 0.18 3.65 6.38 -5.19 -0.03 3.62 16 16 N -0.73 -18.34 5.59 -61.09 -0.34 -18.69 16 17 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 21 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.11 -1.58 9.70 -39.58 -0.38 -1.97 16 26 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 27 S 0.17 1.17 22.31 -107.50 -2.40 -1.23 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.19 1.65 8.06 -52.48 -0.42 1.23 16 34 H 0.40 3.38 7.65 -40.82 -0.31 3.06 16 35 H 0.08 0.87 8.09 -51.92 -0.42 0.45 16 36 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 38 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 41 H 0.39 10.42 7.66 -40.82 -0.31 10.11 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 394.92 15.07 5.95 5.95 Total: -1.00 -33.24 394.92 -10.94 -44.18 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.08 Total: 8.24 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.40 Total: -8.59 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.09 Total: -58.19 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.09 Total: -7.56 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.40 Total: -1.23 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.24 -10.94 -44.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698719180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.717 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds