Wall clock time and date at job start Wed Apr 1 2020 03:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47439 * 2 1 4 4 N 1.29422 * 124.80246 * 90.02232 * 3 2 1 5 5 C 1.30947 * 117.36060 * 179.97438 * 4 3 2 6 6 C 1.35660 * 114.19399 * 359.97438 * 5 4 3 7 7 C 1.46680 * 126.13148 * 180.02562 * 6 5 4 8 8 O 1.21683 * 120.00091 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99703 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72441 * 9 7 6 11 11 C 1.50703 * 109.47138 * 180.28062 * 10 9 7 12 12 C 1.38233 * 119.99680 * 269.72871 * 11 10 9 13 13 C 1.38240 * 120.00155 * 179.76981 * 12 11 10 14 14 C 1.38241 * 119.99430 * 0.47615 * 13 12 11 15 15 C 1.50695 * 119.99655 * 179.77268 * 14 13 12 16 16 N 1.46502 * 109.47431 * 270.02262 * 15 14 13 17 17 C 1.36936 * 120.00293 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99933 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00060 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00063 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47176 * 89.99693 * 21 19 17 23 23 H 1.48506 * 109.46863 * 209.99920 * 21 19 17 24 24 H 1.48504 * 109.47041 * 329.99363 * 21 19 17 25 25 C 1.38233 * 120.00075 * 359.79594 * 14 13 12 26 26 C 1.38231 * 120.00146 * 89.99859 * 11 10 9 27 27 S 1.70948 * 124.80220 * 270.29988 * 3 2 1 28 28 H 1.08997 * 109.47035 * 300.00110 * 1 2 3 29 29 H 1.09002 * 109.46543 * 59.99866 * 1 2 3 30 30 H 1.08997 * 109.47316 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47035 * 239.99890 * 2 1 3 32 32 H 1.09002 * 109.46543 * 120.00134 * 2 1 3 33 33 H 1.08003 * 122.90074 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 35 35 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 36 36 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 37 37 H 1.08005 * 120.00115 * 359.97438 * 12 11 10 38 38 H 1.07995 * 120.00252 * 180.25669 * 13 12 11 39 39 H 1.09000 * 109.47642 * 30.02444 * 15 14 13 40 40 H 1.08998 * 109.47269 * 150.02425 * 15 14 13 41 41 H 0.97000 * 119.99844 * 0.02562 * 16 15 14 42 42 H 0.96991 * 119.99957 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.00181 * 179.97438 * 25 14 13 44 44 H 1.07994 * 120.00283 * 0.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2791 2.1171 1.0627 5 6 2.7124 3.3411 0.8931 6 6 2.8433 3.7095 -0.4059 7 6 3.3056 5.0137 -0.8926 8 8 3.6145 5.8842 -0.1004 9 7 3.3893 5.2475 -2.2173 10 6 3.8453 6.5521 -2.7034 11 6 3.8417 6.5560 -4.2105 12 6 4.9715 6.1668 -4.9053 13 6 4.9667 6.1657 -6.2877 14 6 3.8352 6.5633 -6.9751 15 6 3.8316 6.5670 -8.4821 16 7 4.2876 7.8716 -8.9683 17 6 4.3667 8.1113 -10.3142 18 1 4.0933 7.3384 -11.0173 19 6 4.7993 9.3472 -10.7749 20 7 5.1330 10.2889 -9.9180 21 14 4.9066 9.6743 -12.6108 22 1 3.6142 10.2253 -13.0918 23 1 5.9916 10.6528 -12.8767 24 1 5.1994 8.4048 -13.3236 25 6 2.7072 6.9578 -6.2802 26 6 2.7104 6.9539 -4.8979 27 16 2.3508 2.3431 -1.4037 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9462 4.0000 1.7163 34 1 3.1434 4.5535 -2.8489 35 1 3.1764 7.3307 -2.3366 36 1 4.8561 6.7415 -2.3421 37 1 5.8570 5.8604 -4.3682 38 1 5.8481 5.8577 -6.8305 39 1 4.5004 5.7885 -8.8490 40 1 2.8209 6.3777 -8.8435 41 1 4.5335 8.5657 -8.3369 42 1 5.4356 11.1524 -10.2399 43 1 1.8233 7.2688 -6.8173 44 1 1.8292 7.2625 -4.3551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698719180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:04 Heat of formation + Delta-G solvation = 14.453216 kcal Electronic energy + Delta-G solvation = -25347.199600 eV Core-core repulsion = 21583.210813 eV Total energy + Delta-G solvation = -3763.988787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.37858 -40.65748 -39.99319 -36.98018 -35.85704 -34.98591 -33.79159 -32.08026 -31.86443 -30.88614 -28.54388 -27.08261 -25.96099 -24.30924 -23.77417 -23.63986 -22.75184 -21.75439 -20.75665 -19.46616 -19.33038 -18.25063 -17.19855 -16.99900 -16.89927 -16.52372 -16.27252 -16.05931 -15.76657 -15.57310 -15.27719 -15.24229 -14.97155 -14.85682 -14.48589 -14.34931 -14.11978 -13.72614 -13.48385 -13.23118 -13.13016 -13.00236 -12.76920 -12.71489 -12.58385 -12.19694 -12.07971 -11.96538 -11.92454 -11.74664 -11.48324 -10.98630 -10.81820 -10.67651 -10.29543 -9.97705 -9.83037 -9.67488 -9.03503 -7.96028 -5.26360 -0.87988 0.07187 0.21194 0.46479 0.49559 1.30681 1.47720 1.49572 1.58137 1.98935 2.02394 2.55044 2.85176 3.01378 3.37276 3.56540 3.71955 3.85192 3.87970 4.03518 4.12450 4.15262 4.24408 4.25904 4.26490 4.28550 4.55023 4.64508 4.67223 4.67989 4.89150 4.89639 4.95150 4.99800 5.05883 5.07097 5.13827 5.19011 5.33036 5.44236 5.47600 5.57524 5.80541 6.04597 6.23983 6.24649 6.52113 6.91587 7.31410 8.04520 8.29314 9.27163 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.001709 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.713124 B =16383.803333 C =17238.600206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C 0.065 3.935 4 N -0.503 5.503 5 C 0.119 3.881 6 C -0.321 4.321 7 C 0.598 3.402 8 O -0.564 6.564 9 N -0.708 5.708 10 C 0.171 3.829 11 C -0.113 4.113 12 C -0.097 4.097 13 C -0.115 4.115 14 C -0.085 4.085 15 C 0.185 3.815 16 N -0.739 5.739 17 C -0.249 4.249 18 H 0.079 0.921 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.268 1.268 25 C -0.115 4.115 26 C -0.097 4.097 27 S 0.217 5.783 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.187 0.813 34 H 0.409 0.591 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.123 0.877 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 -23.225 21.451 32.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 C -0.209 4.209 4 N -0.218 5.218 5 C -0.040 4.040 6 C -0.445 4.445 7 C 0.384 3.616 8 O -0.445 6.445 9 N -0.359 5.359 10 C 0.049 3.951 11 C -0.114 4.114 12 C -0.115 4.115 13 C -0.134 4.134 14 C -0.086 4.086 15 C 0.059 3.941 16 N -0.382 5.382 17 C -0.380 4.380 18 H 0.097 0.903 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.805 3.195 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.192 1.192 25 C -0.134 4.134 26 C -0.115 4.115 27 S 0.474 5.526 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.204 0.796 34 H 0.245 0.755 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.160 0.840 38 H 0.141 0.859 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.141 0.859 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.470 -23.131 21.190 32.493 hybrid contribution 0.461 1.360 -0.376 1.485 sum -8.009 -21.771 20.814 31.166 Atomic orbital electron populations 1.21798 0.92439 1.04042 1.02264 1.20571 0.97417 0.85322 1.06241 1.28198 0.98875 1.02961 0.90888 1.66291 1.16993 1.06241 1.32257 1.22295 0.94350 0.91546 0.95775 1.25648 1.19196 1.00981 0.98699 1.16885 0.77047 0.85178 0.82473 1.90835 1.51258 1.46307 1.56056 1.45913 1.67361 1.16770 1.05849 1.20165 1.01366 0.84624 0.88993 1.19758 0.94621 1.02701 0.94324 1.21211 0.98387 0.98576 0.93367 1.21182 0.97508 0.99942 0.94731 1.20186 0.94744 0.98209 0.95422 1.19774 0.97367 0.87948 0.88974 1.42540 1.79914 1.11809 1.03930 1.19677 1.36144 0.97578 0.84608 0.90305 1.25615 1.02591 0.96373 1.02153 1.69836 1.52546 1.05026 1.34544 0.85096 0.76910 0.77632 0.79829 1.21332 1.22240 1.19238 1.21178 0.98204 0.99297 0.94681 1.21206 0.98407 0.98521 0.93416 1.83762 1.56609 1.02267 1.09924 0.93172 0.92079 0.89145 0.86808 0.87817 0.79640 0.75488 0.90087 0.90061 0.83974 0.85908 0.95090 0.95085 0.79510 0.93990 0.85917 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.90 71.98 0.71 -0.08 16 2 C -0.05 -0.34 6.51 29.85 0.19 -0.15 16 3 C 0.06 0.83 6.64 88.46 0.59 1.42 16 4 N -0.50 -9.03 10.51 -190.30 -2.00 -11.03 16 5 C 0.12 2.26 11.09 84.23 0.93 3.20 16 6 C -0.32 -5.88 6.48 23.88 0.15 -5.72 16 7 C 0.60 13.10 7.79 86.45 0.67 13.77 16 8 O -0.56 -16.32 16.87 -4.29 -0.07 -16.39 16 9 N -0.71 -12.74 5.54 -470.81 -2.61 -15.35 16 10 C 0.17 3.34 5.80 85.63 0.50 3.84 16 11 C -0.11 -2.47 5.25 -19.87 -0.10 -2.57 16 12 C -0.10 -2.27 9.70 22.27 0.22 -2.05 16 13 C -0.12 -3.34 9.70 22.27 0.22 -3.13 16 14 C -0.09 -2.80 5.25 -19.87 -0.10 -2.90 16 15 C 0.19 7.38 6.38 85.63 0.55 7.93 16 16 N -0.74 -37.83 5.59 -347.18 -1.94 -39.77 16 17 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 19 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 20 N -0.97 -59.66 13.06 21.65 0.28 -59.37 16 21 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 C -0.12 -3.34 9.70 22.27 0.22 -3.12 16 26 C -0.10 -2.27 9.70 22.27 0.22 -2.05 16 27 S 0.22 2.54 22.31 -56.49 -1.26 1.28 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.31 16 30 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.19 3.39 8.06 -2.91 -0.02 3.36 16 34 H 0.41 5.92 7.65 -92.71 -0.71 5.21 16 35 H 0.08 1.62 8.09 -2.38 -0.02 1.60 16 36 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 37 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 39 H 0.03 1.22 8.09 -2.39 -0.02 1.20 16 40 H 0.03 1.22 8.09 -2.39 -0.02 1.20 16 41 H 0.37 20.64 7.66 -92.71 -0.71 19.93 16 42 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 44 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -72.03 394.92 0.30 -71.73 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.38 Total: 29.49 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 6.26 Total: -8.51 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -6.27 Total: -125.52 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.07 Total: -16.39 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.26 Total: 1.28 kcal Total: -72.03 0.30 -71.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698719180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.184 kcal (2) G-P(sol) polarization free energy of solvation -72.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds