Wall clock time and date at job start Wed Apr 1 2020 02:51:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31612 * 1
3 3 Si 1.86805 * 119.99859 * 2 1
4 4 H 1.48502 * 109.46971 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.47316 * 300.00297 * 3 2 1
6 6 H 1.48499 * 109.46867 * 60.00331 * 3 2 1
7 7 C 1.38812 * 120.00317 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00284 * 180.02562 * 7 2 1
9 9 N 1.36942 * 119.99703 * 359.97438 * 7 2 1
10 10 C 1.46496 * 119.99715 * 174.61229 * 9 7 2
11 11 C 1.53000 * 110.01799 * 301.45978 * 10 9 7
12 12 N 1.46504 * 109.47103 * 303.90497 * 11 10 9
13 13 C 1.34776 * 119.99956 * 175.12171 * 12 11 10
14 14 O 1.21608 * 120.00066 * 0.02562 * 13 12 11
15 15 C 1.47370 * 119.99628 * 179.97438 * 13 12 11
16 16 C 1.38761 * 120.55593 * 359.72810 * 15 13 12
17 17 N 1.31900 * 121.11871 * 179.69504 * 16 15 13
18 18 C 1.31673 * 122.21951 * 0.59589 * 17 16 15
19 19 C 1.39290 * 121.13843 * 359.70082 * 18 17 16
20 20 S 1.75882 * 131.39541 * 180.02562 * 19 18 17
21 21 C 1.75547 * 91.52352 * 179.97438 * 20 19 18
22 22 C 1.32475 * 110.79873 * 359.97438 * 21 20 19
23 23 C 1.40016 * 115.77289 * 0.02562 * 22 21 20
24 24 C 1.54267 * 110.07578 * 62.87923 * 10 9 7
25 25 C 1.54891 * 104.19452 * 95.69533 * 24 10 9
26 26 C 1.54889 * 102.74630 * 37.94453 * 25 24 10
27 27 C 1.53876 * 110.03010 * 180.02562 * 10 9 7
28 28 H 0.97000 * 120.00160 * 359.97438 * 1 2 3
29 29 H 0.96999 * 119.99569 * 354.60568 * 9 7 2
30 30 H 1.08996 * 109.47615 * 183.90808 * 11 10 9
31 31 H 1.09003 * 109.47374 * 63.90506 * 11 10 9
32 32 H 0.96998 * 119.99691 * 355.13020 * 12 11 10
33 33 H 1.07994 * 119.43651 * 359.97340 * 16 15 13
34 34 H 1.08004 * 119.43375 * 179.72256 * 18 17 16
35 35 H 1.08002 * 124.60437 * 179.97438 * 21 20 19
36 36 H 1.07997 * 122.11750 * 180.02562 * 22 21 20
37 37 H 1.08998 * 110.48408 * 214.37183 * 24 10 9
38 38 H 1.08998 * 110.48610 * 337.01483 * 24 10 9
39 39 H 1.08998 * 110.75533 * 279.62765 * 25 24 10
40 40 H 1.09003 * 110.75531 * 156.25565 * 25 24 10
41 41 H 1.09003 * 110.48308 * 203.37305 * 26 25 24
42 42 H 1.08997 * 110.49088 * 80.73746 * 26 25 24
43 43 H 1.08997 * 110.03462 * 359.94627 * 27 10 9
44 44 H 1.08997 * 110.03467 * 121.38103 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3464 0.0006
5 1 1.8913 2.3966 -1.2125
6 1 1.8914 2.3964 1.2125
7 6 2.0102 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 7 1.3255 -2.3881 -0.0005
10 6 2.0532 -3.6539 -0.1202
11 6 2.8614 -3.6726 -1.4192
12 7 1.9665 -3.4353 -2.5546
13 6 2.4732 -3.3101 -3.7973
14 8 3.6731 -3.3946 -3.9761
15 6 1.5729 -3.0720 -4.9394
16 6 0.2014 -2.9802 -4.7494
17 7 -0.6140 -2.7614 -5.7628
18 6 -0.1787 -2.6308 -6.9986
19 6 1.1795 -2.7125 -7.2963
20 16 2.0460 -2.5805 -8.8212
21 6 3.5881 -2.8295 -8.0203
22 6 3.4201 -2.9934 -6.7165
23 6 2.0971 -2.9371 -6.2614
24 6 2.9923 -3.8413 1.0892
25 6 2.1757 -4.7165 2.0722
26 6 1.4392 -5.6969 1.1259
27 6 1.0658 -4.8338 -0.0957
28 1 -0.4850 0.8400 0.0004
29 1 0.3588 -2.3899 0.0788
30 1 3.3435 -4.6435 -1.5333
31 1 3.6210 -2.8915 -1.3858
32 1 1.0095 -3.3681 -2.4120
33 1 -0.2048 -3.0854 -3.7543
34 1 -0.8870 -2.4570 -7.7953
35 1 4.5442 -2.8468 -8.5223
36 1 4.2509 -3.1598 -6.0469
37 1 3.9046 -4.3560 0.7877
38 1 3.2284 -2.8781 1.5417
39 1 1.4630 -4.1089 2.6298
40 1 2.8373 -5.2568 2.7493
41 1 0.5418 -6.0880 1.6053
42 1 2.1006 -6.5112 0.8303
43 1 0.0453 -4.4646 0.0061
44 1 1.1617 -5.4200 -1.0096
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001698800702.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:51:16
Heat of formation + Delta-G solvation = 29.701500 kcal
Electronic energy + Delta-G solvation = -27981.156398 eV
Core-core repulsion = 24217.828826 eV
Total energy + Delta-G solvation = -3763.327571 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.125 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.79137 -39.15496 -38.00407 -36.41434 -34.16041 -33.38677 -31.82216 -30.52720
-30.40074 -28.30747 -27.84162 -25.16708 -24.61189 -23.86354 -23.05016 -21.12096
-20.78702 -20.01206 -18.90801 -18.15442 -17.33085 -16.99794 -16.43121 -16.13781
-15.58608 -15.14180 -14.98132 -14.69289 -14.42022 -14.15663 -14.13690 -14.02892
-13.51628 -13.35621 -12.86151 -12.76406 -12.61274 -12.31869 -12.10348 -11.98051
-11.48474 -11.17607 -11.07256 -10.82259 -10.76171 -10.67183 -10.52958 -10.27199
-10.18737 -10.12210 -9.95575 -9.87462 -9.68394 -9.38962 -9.18251 -8.94754
-8.55798 -7.98683 -7.04570 -5.83492 -3.12727 0.18788 0.68552 1.25515
1.68771 2.24347 3.00865 3.39850 3.47521 3.48189 3.51415 3.86850
4.23622 4.42413 4.54223 4.61798 4.77052 5.00639 5.07153 5.07987
5.18719 5.20402 5.30639 5.51080 5.53988 5.64226 5.73226 5.78555
5.90325 5.91226 6.01345 6.06157 6.13476 6.19845 6.23322 6.27691
6.32961 6.40943 6.52042 6.55119 6.73880 6.78062 6.92414 7.03045
7.68969 7.71770 7.91661 8.34935 8.54014 9.47217 10.00157 10.35398
11.38437
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.010642 B = 0.003579 C = 0.003123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2630.538653 B = 7820.893774 C = 8962.749984
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C -0.006 4.006
3 Si 0.899 3.101
4 H -0.280 1.280
5 H -0.293 1.293
6 H -0.292 1.292
7 C -0.234 4.234
8 H 0.070 0.930
9 N -0.711 5.711
10 C 0.188 3.812
11 C 0.120 3.880
12 N -0.689 5.689
13 C 0.559 3.441
14 O -0.547 6.547
15 C -0.140 4.140
16 C 0.130 3.870
17 N -0.471 5.471
18 C 0.174 3.826
19 C -0.216 4.216
20 S 0.107 5.893
21 C -0.177 4.177
22 C -0.118 4.118
23 C 0.014 3.986
24 C -0.131 4.131
25 C -0.117 4.117
26 C -0.120 4.120
27 C -0.127 4.127
28 H 0.254 0.746
29 H 0.384 0.616
30 H 0.054 0.946
31 H 0.070 0.930
32 H 0.402 0.598
33 H 0.167 0.833
34 H 0.164 0.836
35 H 0.174 0.826
36 H 0.168 0.832
37 H 0.052 0.948
38 H 0.079 0.921
39 H 0.068 0.932
40 H 0.054 0.946
41 H 0.058 0.942
42 H 0.058 0.942
43 H 0.069 0.931
44 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.053 -10.698 -12.160 16.325
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.577 5.577
2 C -0.203 4.203
3 Si 0.730 3.270
4 H -0.206 1.206
5 H -0.220 1.220
6 H -0.219 1.219
7 C -0.365 4.365
8 H 0.088 0.912
9 N -0.353 5.353
10 C 0.096 3.904
11 C -0.006 4.006
12 N -0.338 5.338
13 C 0.345 3.655
14 O -0.427 6.427
15 C -0.147 4.147
16 C -0.023 4.023
17 N -0.180 5.180
18 C 0.006 3.994
19 C -0.333 4.333
20 S 0.369 5.631
21 C -0.312 4.312
22 C -0.147 4.147
23 C -0.002 4.002
24 C -0.172 4.172
25 C -0.155 4.155
26 C -0.158 4.158
27 C -0.165 4.165
28 H 0.064 0.936
29 H 0.219 0.781
30 H 0.072 0.928
31 H 0.089 0.911
32 H 0.238 0.762
33 H 0.184 0.816
34 H 0.181 0.819
35 H 0.191 0.809
36 H 0.186 0.814
37 H 0.071 0.929
38 H 0.098 0.902
39 H 0.086 0.914
40 H 0.073 0.927
41 H 0.077 0.923
42 H 0.077 0.923
43 H 0.088 0.912
44 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 1.743 -10.311 -13.537 17.106
hybrid contribution 1.037 0.953 1.379 1.971
sum 2.780 -9.358 -12.158 15.592
Atomic orbital electron populations
1.69643 1.04973 1.25572 1.57513 1.24668 0.95392 0.97457 1.02740
0.86247 0.79037 0.84572 0.77143 1.20556 1.21977 1.21899 1.19116
0.91032 0.83783 1.42601 0.91198 1.42567 1.06006 0.99448 1.87256
1.20467 0.91357 0.87252 0.91309 1.21958 0.93126 0.99790 0.85743
1.45656 1.11615 1.70594 1.05942 1.17736 0.87485 0.77528 0.82766
1.90679 1.15095 1.51893 1.85049 1.20950 0.95072 1.05624 0.93029
1.22854 0.88530 0.92372 0.98516 1.67753 1.38539 1.12541 0.99120
1.22377 0.90540 0.92141 0.94346 1.23830 0.99369 1.11748 0.98383
1.84056 0.97269 1.75645 1.06170 1.25539 1.01687 1.06414 0.97565
1.20318 0.97255 1.01553 0.95554 1.18268 0.93057 0.96874 0.92026
1.22821 0.97287 1.00347 0.96714 1.22387 0.98757 0.97067 0.97246
1.22281 0.99626 0.97614 0.96281 1.22432 0.99900 0.96338 0.97872
0.93571 0.78081 0.92804 0.91141 0.76216 0.81574 0.81881 0.80912
0.81444 0.92902 0.90240 0.91372 0.92714 0.92321 0.92275 0.91193
0.92067
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -26.38 13.06 55.49 0.72 -25.65 16
2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16
3 Si 0.90 22.11 29.55 -169.99 -5.02 17.09 16
4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
5 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16
6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
7 C -0.23 -5.94 8.39 -15.06 -0.13 -6.06 16
8 H 0.07 1.80 7.23 -52.49 -0.38 1.42 16
9 N -0.71 -15.50 4.76 -46.20 -0.22 -15.72 16
10 C 0.19 3.28 0.68 -130.70 -0.09 3.19 16
11 C 0.12 2.12 3.99 -4.04 -0.02 2.10 16
12 N -0.69 -11.86 5.05 -61.40 -0.31 -12.18 16
13 C 0.56 10.05 7.77 -12.54 -0.10 9.95 16
14 O -0.55 -10.92 14.46 5.27 0.08 -10.84 16
15 C -0.14 -2.26 5.94 -104.21 -0.62 -2.88 16
16 C 0.13 1.98 10.67 -17.33 -0.18 1.79 16
17 N -0.47 -6.88 10.32 -12.88 -0.13 -7.01 16
18 C 0.17 2.17 11.20 -17.23 -0.19 1.98 16
19 C -0.22 -2.81 6.52 -38.48 -0.25 -3.06 16
20 S 0.11 1.08 23.29 -107.50 -2.50 -1.43 16
21 C -0.18 -1.88 11.10 28.82 0.32 -1.56 16
22 C -0.12 -1.62 9.43 -40.83 -0.39 -2.00 16
23 C 0.01 0.22 5.88 -106.74 -0.63 -0.41 16
24 C -0.13 -2.18 5.94 -25.07 -0.15 -2.33 16
25 C -0.12 -1.69 6.91 -24.74 -0.17 -1.86 16
26 C -0.12 -1.57 6.83 -25.13 -0.17 -1.74 16
27 C -0.13 -1.86 5.80 -25.67 -0.15 -2.01 16
28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16
29 H 0.38 9.00 7.28 -40.82 -0.30 8.70 16
30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
31 H 0.07 1.44 7.49 -51.93 -0.39 1.05 16
32 H 0.40 6.58 6.03 -40.82 -0.25 6.34 16
33 H 0.17 2.32 6.37 -52.49 -0.33 1.99 16
34 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16
35 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16
36 H 0.17 2.49 6.28 -52.49 -0.33 2.16 16
37 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16
38 H 0.08 1.52 7.12 -51.93 -0.37 1.15 16
39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
43 H 0.07 1.06 7.44 -51.93 -0.39 0.67 16
44 H 0.06 0.82 7.55 -51.93 -0.39 0.43 16
LS Contribution 370.15 15.07 5.58 5.58
Total: -1.00 -30.13 370.15 -10.44 -40.57
By element:
Atomic # 1 Polarization: 20.38 SS G_CDS: -5.63 Total: 14.76 kcal
Atomic # 6 Polarization: -2.16 SS G_CDS: -3.01 Total: -5.17 kcal
Atomic # 7 Polarization: -60.62 SS G_CDS: 0.06 Total: -60.56 kcal
Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal
Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal
Atomic # 16 Polarization: 1.08 SS G_CDS: -2.50 Total: -1.43 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -30.13 -10.44 -40.57 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001698800702.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.271 kcal
(2) G-P(sol) polarization free energy of solvation -30.127 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.144 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.702 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds