Wall clock time and date at job start Wed Apr 1 2020 02:51:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31612 * 1
3 3 Si 1.86805 * 119.99859 * 2 1
4 4 H 1.48502 * 109.46971 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.47316 * 300.00297 * 3 2 1
6 6 H 1.48499 * 109.46867 * 60.00331 * 3 2 1
7 7 C 1.38812 * 120.00317 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00284 * 180.02562 * 7 2 1
9 9 N 1.36942 * 119.99703 * 359.97438 * 7 2 1
10 10 C 1.46496 * 119.99715 * 174.61229 * 9 7 2
11 11 C 1.53000 * 110.01799 * 301.45978 * 10 9 7
12 12 N 1.46504 * 109.47103 * 303.90497 * 11 10 9
13 13 C 1.34776 * 119.99956 * 175.12171 * 12 11 10
14 14 O 1.21608 * 120.00066 * 0.02562 * 13 12 11
15 15 C 1.47370 * 119.99628 * 179.97438 * 13 12 11
16 16 C 1.38761 * 120.55593 * 359.72810 * 15 13 12
17 17 N 1.31900 * 121.11871 * 179.69504 * 16 15 13
18 18 C 1.31673 * 122.21951 * 0.59589 * 17 16 15
19 19 C 1.39290 * 121.13843 * 359.70082 * 18 17 16
20 20 S 1.75882 * 131.39541 * 180.02562 * 19 18 17
21 21 C 1.75547 * 91.52352 * 179.97438 * 20 19 18
22 22 C 1.32475 * 110.79873 * 359.97438 * 21 20 19
23 23 C 1.40016 * 115.77289 * 0.02562 * 22 21 20
24 24 C 1.54267 * 110.07578 * 62.87923 * 10 9 7
25 25 C 1.54891 * 104.19452 * 95.69533 * 24 10 9
26 26 C 1.54889 * 102.74630 * 37.94453 * 25 24 10
27 27 C 1.53876 * 110.03010 * 180.02562 * 10 9 7
28 28 H 0.97000 * 120.00160 * 359.97438 * 1 2 3
29 29 H 0.96999 * 119.99569 * 354.60568 * 9 7 2
30 30 H 1.08996 * 109.47615 * 183.90808 * 11 10 9
31 31 H 1.09003 * 109.47374 * 63.90506 * 11 10 9
32 32 H 0.96998 * 119.99691 * 355.13020 * 12 11 10
33 33 H 1.07994 * 119.43651 * 359.97340 * 16 15 13
34 34 H 1.08004 * 119.43375 * 179.72256 * 18 17 16
35 35 H 1.08002 * 124.60437 * 179.97438 * 21 20 19
36 36 H 1.07997 * 122.11750 * 180.02562 * 22 21 20
37 37 H 1.08998 * 110.48408 * 214.37183 * 24 10 9
38 38 H 1.08998 * 110.48610 * 337.01483 * 24 10 9
39 39 H 1.08998 * 110.75533 * 279.62765 * 25 24 10
40 40 H 1.09003 * 110.75531 * 156.25565 * 25 24 10
41 41 H 1.09003 * 110.48308 * 203.37305 * 26 25 24
42 42 H 1.08997 * 110.49088 * 80.73746 * 26 25 24
43 43 H 1.08997 * 110.03462 * 359.94627 * 27 10 9
44 44 H 1.08997 * 110.03467 * 121.38103 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3464 0.0006
5 1 1.8913 2.3966 -1.2125
6 1 1.8914 2.3964 1.2125
7 6 2.0102 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 7 1.3255 -2.3881 -0.0005
10 6 2.0532 -3.6539 -0.1202
11 6 2.8614 -3.6726 -1.4192
12 7 1.9665 -3.4353 -2.5546
13 6 2.4732 -3.3101 -3.7973
14 8 3.6731 -3.3946 -3.9761
15 6 1.5729 -3.0720 -4.9394
16 6 0.2014 -2.9802 -4.7494
17 7 -0.6140 -2.7614 -5.7628
18 6 -0.1787 -2.6308 -6.9986
19 6 1.1795 -2.7125 -7.2963
20 16 2.0460 -2.5805 -8.8212
21 6 3.5881 -2.8295 -8.0203
22 6 3.4201 -2.9934 -6.7165
23 6 2.0971 -2.9371 -6.2614
24 6 2.9923 -3.8413 1.0892
25 6 2.1757 -4.7165 2.0722
26 6 1.4392 -5.6969 1.1259
27 6 1.0658 -4.8338 -0.0957
28 1 -0.4850 0.8400 0.0004
29 1 0.3588 -2.3899 0.0788
30 1 3.3435 -4.6435 -1.5333
31 1 3.6210 -2.8915 -1.3858
32 1 1.0095 -3.3681 -2.4120
33 1 -0.2048 -3.0854 -3.7543
34 1 -0.8870 -2.4570 -7.7953
35 1 4.5442 -2.8468 -8.5223
36 1 4.2509 -3.1598 -6.0469
37 1 3.9046 -4.3560 0.7877
38 1 3.2284 -2.8781 1.5417
39 1 1.4630 -4.1089 2.6298
40 1 2.8373 -5.2568 2.7493
41 1 0.5418 -6.0880 1.6053
42 1 2.1006 -6.5112 0.8303
43 1 0.0453 -4.4646 0.0061
44 1 1.1617 -5.4200 -1.0096
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001698800702.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:51:15
Heat of formation + Delta-G solvation = 11.016843 kcal
Electronic energy + Delta-G solvation = -27981.966625 eV
Core-core repulsion = 24217.828826 eV
Total energy + Delta-G solvation = -3764.137799 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.125 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-41.91839 -40.49626 -39.37465 -37.42668 -35.58691 -35.16586 -33.06803 -32.19179
-31.39947 -29.57175 -29.37597 -26.56572 -25.69238 -25.40093 -24.44783 -22.25645
-21.94776 -21.26012 -20.26956 -19.40430 -18.89964 -18.47608 -17.55830 -17.30538
-16.92494 -16.49077 -16.34739 -16.08773 -15.77513 -15.38192 -15.26329 -15.19717
-15.11208 -14.85914 -14.21327 -14.06047 -13.75202 -13.50307 -13.32937 -13.23429
-13.11186 -12.97137 -12.49631 -12.33145 -12.17230 -12.00252 -11.87855 -11.71745
-11.59362 -11.40529 -11.36794 -11.29988 -11.03149 -10.90891 -10.62386 -10.17908
-9.98275 -8.95645 -8.90661 -7.92282 -5.17167 -0.86364 -0.37017 0.35642
0.76226 1.22926 1.39980 1.43778 1.49658 1.73589 2.19054 2.54707
2.69165 3.20711 3.39728 3.41646 3.62916 3.68108 3.76924 3.85585
3.94302 3.96624 4.12473 4.19801 4.29142 4.45496 4.49430 4.58634
4.67556 4.75522 4.79017 4.87157 4.96646 5.03409 5.05306 5.13690
5.18774 5.19657 5.28314 5.31386 5.40360 5.46013 5.56406 5.62038
5.66238 6.31798 6.51773 6.66695 7.15339 7.39517 8.13123 8.37196
9.30193
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.010642 B = 0.003579 C = 0.003123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2630.538653 B = 7820.893774 C = 8962.749984
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.958 5.958
2 C -0.062 4.062
3 Si 0.944 3.056
4 H -0.276 1.276
5 H -0.302 1.302
6 H -0.294 1.294
7 C -0.211 4.211
8 H 0.063 0.937
9 N -0.714 5.714
10 C 0.184 3.816
11 C 0.127 3.873
12 N -0.688 5.688
13 C 0.556 3.444
14 O -0.575 6.575
15 C -0.170 4.170
16 C 0.129 3.871
17 N -0.493 5.493
18 C 0.185 3.815
19 C -0.238 4.238
20 S 0.186 5.814
21 C -0.154 4.154
22 C -0.157 4.157
23 C -0.003 4.003
24 C -0.132 4.132
25 C -0.113 4.113
26 C -0.112 4.112
27 C -0.122 4.122
28 H 0.247 0.753
29 H 0.376 0.624
30 H 0.072 0.928
31 H 0.036 0.964
32 H 0.405 0.595
33 H 0.167 0.833
34 H 0.203 0.797
35 H 0.208 0.792
36 H 0.147 0.853
37 H 0.071 0.929
38 H 0.047 0.953
39 H 0.049 0.951
40 H 0.078 0.922
41 H 0.074 0.926
42 H 0.080 0.920
43 H 0.063 0.937
44 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.224 -12.191 -14.311 18.931
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.609 5.609
2 C -0.255 4.255
3 Si 0.776 3.224
4 H -0.201 1.201
5 H -0.230 1.230
6 H -0.221 1.221
7 C -0.344 4.344
8 H 0.081 0.919
9 N -0.355 5.355
10 C 0.093 3.907
11 C 0.001 3.999
12 N -0.337 5.337
13 C 0.343 3.657
14 O -0.457 6.457
15 C -0.177 4.177
16 C -0.023 4.023
17 N -0.202 5.202
18 C 0.018 3.982
19 C -0.355 4.355
20 S 0.448 5.552
21 C -0.290 4.290
22 C -0.187 4.187
23 C -0.020 4.020
24 C -0.172 4.172
25 C -0.150 4.150
26 C -0.149 4.149
27 C -0.160 4.160
28 H 0.056 0.944
29 H 0.210 0.790
30 H 0.090 0.910
31 H 0.055 0.945
32 H 0.242 0.758
33 H 0.184 0.816
34 H 0.219 0.781
35 H 0.225 0.775
36 H 0.165 0.835
37 H 0.089 0.911
38 H 0.066 0.934
39 H 0.067 0.933
40 H 0.096 0.904
41 H 0.093 0.907
42 H 0.099 0.901
43 H 0.082 0.918
44 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 1.936 -11.839 -15.682 19.744
hybrid contribution 1.078 1.363 1.850 2.538
sum 3.014 -10.476 -13.832 17.611
Atomic orbital electron populations
1.69744 1.05784 1.25323 1.60068 1.25168 0.96020 0.99660 1.04634
0.85501 0.78355 0.82161 0.76392 1.20085 1.23027 1.22090 1.19251
0.90790 0.85024 1.39319 0.91887 1.42642 1.05668 1.00146 1.87006
1.20735 0.92082 0.86486 0.91351 1.21854 0.92571 0.99460 0.86044
1.45647 1.11664 1.70587 1.05796 1.18096 0.87486 0.76761 0.83313
1.90649 1.16261 1.53250 1.85521 1.20823 0.95156 1.08613 0.93086
1.22865 0.88292 0.92140 0.99007 1.67802 1.38569 1.13904 0.99894
1.23034 0.91223 0.89551 0.94432 1.24160 0.99564 1.11955 0.99856
1.83822 0.95077 1.73329 1.02943 1.26039 1.03952 1.02395 0.96649
1.20201 0.96386 1.05307 0.96776 1.18517 0.94214 0.97083 0.92181
1.22779 0.98238 0.99584 0.96576 1.22354 0.98523 0.96926 0.97229
1.22273 1.00559 0.97306 0.94781 1.22387 0.98515 0.95389 0.99725
0.94366 0.79014 0.90992 0.94506 0.75811 0.81564 0.78070 0.77513
0.83511 0.91089 0.93392 0.93251 0.90359 0.90736 0.90140 0.91840
0.90541
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -56.00 13.06 21.65 0.28 -55.72 16
2 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16
3 Si 0.94 46.71 29.55 68.60 2.03 48.74 16
4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16
5 H -0.30 -15.31 7.11 99.48 0.71 -14.61 16
6 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16
7 C -0.21 -11.03 8.39 84.03 0.70 -10.32 16
8 H 0.06 3.35 7.23 -2.91 -0.02 3.32 16
9 N -0.71 -31.93 4.76 -300.07 -1.43 -33.36 16
10 C 0.18 6.42 0.68 4.33 0.00 6.42 16
11 C 0.13 4.56 3.99 86.38 0.34 4.91 16
12 N -0.69 -24.51 5.05 -466.42 -2.36 -26.87 16
13 C 0.56 20.91 7.77 86.65 0.67 21.58 16
14 O -0.57 -24.07 14.46 -4.06 -0.06 -24.13 16
15 C -0.17 -5.69 5.94 -19.59 -0.12 -5.81 16
16 C 0.13 4.02 10.67 84.81 0.90 4.93 16
17 N -0.49 -14.15 10.32 -194.65 -2.01 -16.16 16
18 C 0.18 4.27 11.20 84.97 0.95 5.22 16
19 C -0.24 -5.76 6.52 22.98 0.15 -5.61 16
20 S 0.19 3.08 23.29 -56.49 -1.32 1.76 16
21 C -0.15 -2.89 11.10 66.69 0.74 -2.15 16
22 C -0.16 -4.31 9.43 21.57 0.20 -4.10 16
23 C 0.00 -0.09 5.88 -21.24 -0.12 -0.21 16
24 C -0.13 -4.32 5.94 31.67 0.19 -4.13 16
25 C -0.11 -3.07 6.91 31.89 0.22 -2.85 16
26 C -0.11 -2.60 6.83 31.63 0.22 -2.39 16
27 C -0.12 -3.41 5.80 31.28 0.18 -3.23 16
28 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16
29 H 0.38 18.10 7.28 -92.71 -0.67 17.42 16
30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16
31 H 0.04 1.57 7.49 -2.39 -0.02 1.55 16
32 H 0.41 13.78 6.03 -92.71 -0.56 13.23 16
33 H 0.17 4.90 6.37 -2.91 -0.02 4.88 16
34 H 0.20 2.89 8.06 -2.91 -0.02 2.87 16
35 H 0.21 2.30 8.06 -2.91 -0.02 2.28 16
36 H 0.15 4.59 6.28 -2.91 -0.02 4.57 16
37 H 0.07 2.06 7.85 -2.39 -0.02 2.04 16
38 H 0.05 1.87 7.12 -2.39 -0.02 1.85 16
39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16
43 H 0.06 1.88 7.44 -2.39 -0.02 1.86 16
44 H 0.08 1.91 7.55 -2.39 -0.02 1.89 16
Total: -1.00 -68.06 370.15 0.67 -67.38
By element:
Atomic # 1 Polarization: 39.27 SS G_CDS: -0.18 Total: 39.09 kcal
Atomic # 6 Polarization: -6.43 SS G_CDS: 5.71 Total: -0.73 kcal
Atomic # 7 Polarization: -126.60 SS G_CDS: -5.51 Total: -132.11 kcal
Atomic # 8 Polarization: -24.07 SS G_CDS: -0.06 Total: -24.13 kcal
Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal
Atomic # 16 Polarization: 3.08 SS G_CDS: -1.32 Total: 1.76 kcal
Total: -68.06 0.67 -67.38 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001698800702.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.398 kcal
(2) G-P(sol) polarization free energy of solvation -68.056 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.343 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.382 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.017 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds