Wall clock time and date at job start Wed Apr 1 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.43609 * 305.70596 * 11 10 9 13 13 C 1.54891 * 110.48273 * 68.24397 * 11 10 9 14 14 C 1.55031 * 102.68201 * 156.51526 * 13 11 10 15 15 C 1.54269 * 104.28113 * 322.23642 * 14 13 11 16 16 C 1.53870 * 106.59902 * 23.51530 * 15 14 13 17 17 H 1.08995 * 110.03381 * 119.29152 * 16 15 14 18 18 N 1.46501 * 110.03284 * 240.71746 * 16 15 14 19 19 C 1.34779 * 120.00250 * 272.16783 * 18 16 15 20 20 O 1.21618 * 119.99449 * 359.97438 * 19 18 16 21 21 C 1.47362 * 120.00257 * 180.02562 * 19 18 16 22 22 C 1.38762 * 120.55362 * 359.97438 * 21 19 18 23 23 N 1.31901 * 121.12188 * 179.97438 * 22 21 19 24 24 C 1.31671 * 122.21853 * 0.02562 * 23 22 21 25 25 C 1.39288 * 121.14168 * 0.02562 * 24 23 22 26 26 S 1.75878 * 131.39813 * 179.97438 * 25 24 23 27 27 C 1.75562 * 91.52123 * 179.48837 * 26 25 24 28 28 C 1.32476 * 110.79245 * 0.42643 * 27 26 25 29 29 C 1.40003 * 115.77991 * 359.54490 * 28 27 26 30 30 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 33 33 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 34 34 H 1.08997 * 110.75662 * 274.93332 * 13 11 10 35 35 H 1.09007 * 110.75813 * 38.30884 * 13 11 10 36 36 H 1.09003 * 110.52903 * 203.49046 * 14 13 11 37 37 H 1.08998 * 110.36713 * 80.90064 * 14 13 11 38 38 H 1.09003 * 110.03142 * 264.23206 * 15 14 13 39 39 H 1.09001 * 110.07367 * 142.82312 * 15 14 13 40 40 H 0.97006 * 120.00357 * 92.16703 * 18 16 15 41 41 H 1.08003 * 119.44253 * 359.95840 * 22 21 19 42 42 H 1.08000 * 119.43026 * 179.97438 * 24 23 22 43 43 H 1.08004 * 124.59677 * 179.97438 * 27 26 25 44 44 H 1.08006 * 122.10507 * 179.57144 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3646 -4.7218 0.8294 13 6 0.3015 -4.8819 -1.3475 14 6 -0.1480 -6.3640 -1.4160 15 6 1.0394 -7.1496 -0.8221 16 6 1.8100 -6.1677 0.0777 17 1 1.8181 -6.5307 1.1054 18 7 3.1824 -6.0110 -0.4104 19 6 4.1469 -6.8544 0.0077 20 8 3.8780 -7.7453 0.7907 21 6 5.5274 -6.6964 -0.4829 22 6 5.8471 -5.6836 -1.3760 23 7 7.0791 -5.5316 -1.8219 24 6 8.0631 -6.3232 -1.4495 25 6 7.8467 -7.3707 -0.5573 26 16 8.9417 -8.5730 0.1126 27 6 7.6471 -9.2971 1.0517 28 6 6.5028 -8.6634 0.8419 29 6 6.5598 -7.5808 -0.0439 30 1 -0.4850 -0.8401 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6843 -3.7140 -0.8921 33 1 2.6855 -3.7148 0.8878 34 1 -0.5605 -4.2148 -1.3346 35 1 0.9648 -4.6417 -2.1785 36 1 -0.3242 -6.6627 -2.4494 37 1 -1.0448 -6.5166 -0.8157 38 1 1.6865 -7.5096 -1.6220 39 1 0.6742 -7.9896 -0.2311 40 1 3.3969 -5.3001 -1.0347 41 1 5.0739 -5.0084 -1.7119 42 1 9.0551 -6.1580 -1.8433 43 1 7.7659 -10.1484 1.7055 44 1 5.5840 -8.9628 1.3243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699026493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:09 Heat of formation + Delta-G solvation = 32.030924 kcal Electronic energy + Delta-G solvation = -27446.357320 eV Core-core repulsion = 23683.130760 eV Total energy + Delta-G solvation = -3763.226560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.14723 -39.75757 -37.95090 -36.62584 -34.72680 -33.76711 -31.82203 -31.50597 -30.64576 -28.45477 -27.76182 -24.95036 -24.72610 -24.16113 -22.60548 -21.47600 -21.27646 -20.43150 -19.37088 -18.78497 -17.74690 -17.31866 -16.64220 -16.27195 -16.04568 -15.41367 -15.10082 -14.80389 -14.64749 -14.39808 -14.34603 -14.18353 -13.80764 -13.64803 -13.41471 -13.13265 -12.99567 -12.55771 -12.44184 -12.33871 -11.67883 -11.33211 -11.19940 -11.00710 -10.80011 -10.63487 -10.60533 -10.47857 -10.44274 -10.36300 -10.22403 -9.98683 -9.71455 -9.42109 -9.20200 -9.08935 -8.90570 -8.23614 -7.03726 -6.12562 -3.12653 -0.08037 0.42366 1.03714 1.47646 2.00537 2.64093 3.02012 3.51378 3.53474 3.54608 3.71971 3.96379 4.15331 4.37754 4.41618 4.53742 4.68672 4.71210 4.73996 4.92625 4.95452 5.00150 5.23104 5.33930 5.46521 5.54311 5.56440 5.60670 5.65585 5.73816 5.76743 5.80553 5.92180 5.94887 5.99250 6.02692 6.06490 6.17506 6.37606 6.39277 6.51867 6.61161 6.67810 7.39485 7.47325 7.78023 8.07376 8.73928 9.20131 10.06526 10.21112 11.35971 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011119 B = 0.002963 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.580396 B = 9448.549155 C =11302.335982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.044 4.044 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.333 4.333 8 H 0.064 0.936 9 N -0.740 5.740 10 C 0.170 3.830 11 C -0.110 4.110 12 H 0.088 0.912 13 C -0.113 4.113 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.150 3.850 17 H 0.092 0.908 18 N -0.710 5.710 19 C 0.565 3.435 20 O -0.537 6.537 21 C -0.149 4.149 22 C 0.130 3.870 23 N -0.471 5.471 24 C 0.181 3.819 25 C -0.218 4.218 26 S 0.118 5.882 27 C -0.172 4.172 28 C -0.122 4.122 29 C 0.017 3.983 30 H 0.255 0.745 31 H 0.368 0.632 32 H 0.014 0.986 33 H 0.021 0.979 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.404 0.596 41 H 0.165 0.835 42 H 0.167 0.833 43 H 0.175 0.825 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.615 -21.021 -2.323 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.241 4.241 3 Si 0.909 3.091 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.464 4.464 8 H 0.082 0.918 9 N -0.385 5.385 10 C 0.042 3.958 11 C -0.129 4.129 12 H 0.106 0.894 13 C -0.151 4.151 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.045 3.955 17 H 0.110 0.890 18 N -0.363 5.363 19 C 0.351 3.649 20 O -0.415 6.415 21 C -0.156 4.156 22 C -0.023 4.023 23 N -0.180 5.180 24 C 0.013 3.987 25 C -0.336 4.336 26 S 0.380 5.620 27 C -0.308 4.308 28 C -0.152 4.152 29 C 0.001 3.999 30 H 0.066 0.934 31 H 0.201 0.799 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.242 0.758 41 H 0.182 0.818 42 H 0.184 0.816 43 H 0.192 0.808 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 15.127 -19.629 -2.482 24.906 hybrid contribution -1.577 -1.709 0.506 2.379 sum 13.551 -21.338 -1.975 25.354 Atomic orbital electron populations 1.70894 1.06034 1.28386 1.53525 1.25764 0.97037 1.00981 1.00334 0.83260 0.74250 0.75630 0.75917 1.21016 1.22271 1.22186 1.20015 0.92008 0.85813 1.48585 0.91809 1.42329 1.04875 1.00753 1.90583 1.20508 0.92930 0.84942 0.97430 1.22514 0.97964 0.93345 0.99053 0.89402 1.22540 1.00269 0.95463 0.96821 1.22410 0.97657 0.95635 1.00567 1.22571 0.97233 0.98016 0.99132 1.21651 0.79661 0.95564 0.98649 0.89002 1.46217 1.08961 1.33243 1.47833 1.17814 0.84082 0.81983 0.81006 1.90709 1.82677 1.33284 1.34843 1.20843 0.94132 0.98691 1.01936 1.22840 0.94054 0.93969 0.91445 1.67778 1.00190 1.25930 1.24097 1.22440 0.98749 0.87262 0.90236 1.23874 0.98201 1.04579 1.06914 1.84174 1.10547 1.24890 1.42415 1.25602 0.95682 1.04937 1.04593 1.20288 1.00531 0.95053 0.99299 1.18248 0.91429 0.94914 0.95334 0.93417 0.79911 0.96830 0.96131 0.90960 0.91355 0.91763 0.91581 0.91468 0.91274 0.75759 0.81770 0.81634 0.80752 0.81466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.90 13.70 55.49 0.76 -28.14 16 2 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 3 Si 1.08 25.85 29.92 -169.99 -5.09 20.77 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.33 -9.30 9.99 -15.06 -0.15 -9.45 16 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.74 -18.07 5.46 -59.91 -0.33 -18.39 16 10 C 0.17 3.24 4.79 -4.04 -0.02 3.22 16 11 C -0.11 -1.66 2.86 -88.96 -0.25 -1.91 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 13 C -0.11 -1.59 6.11 -24.66 -0.15 -1.74 16 14 C -0.12 -1.43 6.83 -24.99 -0.17 -1.60 16 15 C -0.13 -1.53 6.59 -25.61 -0.17 -1.70 16 16 C 0.15 2.00 3.12 -66.81 -0.21 1.79 16 17 H 0.09 1.32 7.56 -51.93 -0.39 0.92 16 18 N -0.71 -9.24 4.29 -53.82 -0.23 -9.47 16 19 C 0.56 7.88 7.76 -12.55 -0.10 7.78 16 20 O -0.54 -8.54 14.12 5.26 0.07 -8.47 16 21 C -0.15 -1.92 5.94 -104.21 -0.62 -2.53 16 22 C 0.13 1.58 10.67 -17.33 -0.18 1.39 16 23 N -0.47 -5.73 10.32 -12.88 -0.13 -5.86 16 24 C 0.18 1.84 11.20 -17.23 -0.19 1.65 16 25 C -0.22 -2.30 6.52 -38.48 -0.25 -2.55 16 26 S 0.12 0.94 23.29 -107.50 -2.50 -1.57 16 27 C -0.17 -1.44 11.10 28.82 0.32 -1.12 16 28 C -0.12 -1.36 9.43 -40.84 -0.39 -1.74 16 29 C 0.02 0.21 5.88 -106.74 -0.63 -0.41 16 30 H 0.25 7.64 6.77 -40.82 -0.28 7.37 16 31 H 0.37 9.17 6.41 -40.82 -0.26 8.91 16 32 H 0.01 0.26 6.34 -51.93 -0.33 -0.07 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.99 8.00 -51.92 -0.42 0.57 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.40 4.96 4.55 -40.82 -0.19 4.78 16 41 H 0.17 1.75 6.37 -52.48 -0.33 1.41 16 42 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.17 2.00 6.28 -52.48 -0.33 1.67 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -33.40 369.74 -10.66 -44.06 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.53 Total: 11.79 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -3.26 Total: -10.28 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.07 Total: -61.87 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.07 Total: -8.47 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.09 Total: 20.77 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.40 -10.66 -44.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699026493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.089 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds