Wall clock time and date at job start Wed Apr 1 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.43609 * 305.70596 * 11 10 9 13 13 C 1.54891 * 110.48273 * 68.24397 * 11 10 9 14 14 C 1.55031 * 102.68201 * 156.51526 * 13 11 10 15 15 C 1.54269 * 104.28113 * 322.23642 * 14 13 11 16 16 C 1.53870 * 106.59902 * 23.51530 * 15 14 13 17 17 H 1.08995 * 110.03381 * 119.29152 * 16 15 14 18 18 N 1.46501 * 110.03284 * 240.71746 * 16 15 14 19 19 C 1.34779 * 120.00250 * 272.16783 * 18 16 15 20 20 O 1.21618 * 119.99449 * 359.97438 * 19 18 16 21 21 C 1.47362 * 120.00257 * 180.02562 * 19 18 16 22 22 C 1.38762 * 120.55362 * 359.97438 * 21 19 18 23 23 N 1.31901 * 121.12188 * 179.97438 * 22 21 19 24 24 C 1.31671 * 122.21853 * 0.02562 * 23 22 21 25 25 C 1.39288 * 121.14168 * 0.02562 * 24 23 22 26 26 S 1.75878 * 131.39813 * 179.97438 * 25 24 23 27 27 C 1.75562 * 91.52123 * 179.48837 * 26 25 24 28 28 C 1.32476 * 110.79245 * 0.42643 * 27 26 25 29 29 C 1.40003 * 115.77991 * 359.54490 * 28 27 26 30 30 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 33 33 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 34 34 H 1.08997 * 110.75662 * 274.93332 * 13 11 10 35 35 H 1.09007 * 110.75813 * 38.30884 * 13 11 10 36 36 H 1.09003 * 110.52903 * 203.49046 * 14 13 11 37 37 H 1.08998 * 110.36713 * 80.90064 * 14 13 11 38 38 H 1.09003 * 110.03142 * 264.23206 * 15 14 13 39 39 H 1.09001 * 110.07367 * 142.82312 * 15 14 13 40 40 H 0.97006 * 120.00357 * 92.16703 * 18 16 15 41 41 H 1.08003 * 119.44253 * 359.95840 * 22 21 19 42 42 H 1.08000 * 119.43026 * 179.97438 * 24 23 22 43 43 H 1.08004 * 124.59677 * 179.97438 * 27 26 25 44 44 H 1.08006 * 122.10507 * 179.57144 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3646 -4.7218 0.8294 13 6 0.3015 -4.8819 -1.3475 14 6 -0.1480 -6.3640 -1.4160 15 6 1.0394 -7.1496 -0.8221 16 6 1.8100 -6.1677 0.0777 17 1 1.8181 -6.5307 1.1054 18 7 3.1824 -6.0110 -0.4104 19 6 4.1469 -6.8544 0.0077 20 8 3.8780 -7.7453 0.7907 21 6 5.5274 -6.6964 -0.4829 22 6 5.8471 -5.6836 -1.3760 23 7 7.0791 -5.5316 -1.8219 24 6 8.0631 -6.3232 -1.4495 25 6 7.8467 -7.3707 -0.5573 26 16 8.9417 -8.5730 0.1126 27 6 7.6471 -9.2971 1.0517 28 6 6.5028 -8.6634 0.8419 29 6 6.5598 -7.5808 -0.0439 30 1 -0.4850 -0.8401 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6843 -3.7140 -0.8921 33 1 2.6855 -3.7148 0.8878 34 1 -0.5605 -4.2148 -1.3346 35 1 0.9648 -4.6417 -2.1785 36 1 -0.3242 -6.6627 -2.4494 37 1 -1.0448 -6.5166 -0.8157 38 1 1.6865 -7.5096 -1.6220 39 1 0.6742 -7.9896 -0.2311 40 1 3.3969 -5.3001 -1.0347 41 1 5.0739 -5.0084 -1.7119 42 1 9.0551 -6.1580 -1.8433 43 1 7.7659 -10.1484 1.7055 44 1 5.5840 -8.9628 1.3243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699026493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:08 Heat of formation + Delta-G solvation = 11.310502 kcal Electronic energy + Delta-G solvation = -27447.255825 eV Core-core repulsion = 23683.130760 eV Total energy + Delta-G solvation = -3764.125065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.06692 -40.80445 -39.11536 -37.43229 -36.60329 -34.84812 -33.34741 -32.72297 -31.43106 -30.04885 -28.82241 -26.18117 -25.77428 -25.41910 -24.36418 -22.48454 -22.09034 -21.49907 -20.60145 -19.84865 -19.21726 -18.63075 -17.51896 -17.28018 -17.15354 -16.68260 -16.25492 -16.00894 -15.72360 -15.60749 -15.37511 -15.30196 -15.14937 -15.04500 -14.84208 -14.59600 -13.81470 -13.68486 -13.36182 -13.14675 -12.88550 -12.85115 -12.62124 -12.27428 -12.06454 -12.00054 -11.93391 -11.86164 -11.74665 -11.54579 -11.42048 -11.22255 -11.07684 -10.92082 -10.68396 -10.25326 -10.13480 -9.11863 -8.95138 -8.40011 -5.34035 -0.91387 -0.40902 0.33138 0.75027 1.20411 1.58426 1.64411 1.67824 1.84262 1.97743 2.62704 2.70156 3.12798 3.33845 3.36435 3.39880 3.56845 3.58827 3.63520 3.76984 3.91415 4.00370 4.09757 4.25806 4.29884 4.37965 4.44562 4.45395 4.48983 4.56070 4.69320 4.73530 4.79026 4.93078 5.00504 5.03322 5.11380 5.16402 5.17845 5.25330 5.27798 5.39246 5.46929 5.57813 6.32834 6.50147 6.62739 7.00610 7.08963 7.99369 8.09932 9.12163 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011119 B = 0.002963 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.580396 B = 9448.549155 C =11302.335982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.101 4.101 3 Si 1.125 2.875 4 H -0.292 1.292 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.336 4.336 8 H 0.065 0.935 9 N -0.751 5.751 10 C 0.171 3.829 11 C -0.101 4.101 12 H 0.081 0.919 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.123 4.123 16 C 0.155 3.845 17 H 0.082 0.918 18 N -0.707 5.707 19 C 0.566 3.434 20 O -0.561 6.561 21 C -0.172 4.172 22 C 0.128 3.872 23 N -0.495 5.495 24 C 0.188 3.812 25 C -0.238 4.238 26 S 0.182 5.818 27 C -0.154 4.154 28 C -0.157 4.157 29 C 0.000 4.000 30 H 0.245 0.755 31 H 0.362 0.638 32 H 0.027 0.973 33 H 0.007 0.993 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.407 0.593 41 H 0.170 0.830 42 H 0.200 0.800 43 H 0.207 0.793 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.969 -22.456 -2.820 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.293 4.293 3 Si 0.950 3.050 4 H -0.218 1.218 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.083 0.917 9 N -0.396 5.396 10 C 0.045 3.955 11 C -0.120 4.120 12 H 0.099 0.901 13 C -0.149 4.149 14 C -0.151 4.151 15 C -0.161 4.161 16 C 0.050 3.950 17 H 0.100 0.900 18 N -0.359 5.359 19 C 0.353 3.647 20 O -0.442 6.442 21 C -0.179 4.179 22 C -0.025 4.025 23 N -0.204 5.204 24 C 0.021 3.979 25 C -0.356 4.356 26 S 0.445 5.555 27 C -0.290 4.290 28 C -0.186 4.186 29 C -0.017 4.017 30 H 0.055 0.945 31 H 0.195 0.805 32 H 0.044 0.956 33 H 0.025 0.975 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.246 0.754 41 H 0.187 0.813 42 H 0.217 0.783 43 H 0.224 0.776 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 17.511 -21.104 -2.991 27.585 hybrid contribution -2.135 -1.396 0.709 2.647 sum 15.376 -22.500 -2.282 27.347 Atomic orbital electron populations 1.70995 1.07114 1.27952 1.56116 1.27144 0.97119 1.04524 1.00476 0.82663 0.73435 0.71779 0.77140 1.21847 1.20702 1.20164 1.20365 0.92323 0.87157 1.46855 0.91721 1.42508 1.04844 1.01709 1.90535 1.20619 0.93513 0.84349 0.97045 1.22382 0.97228 0.92685 0.99734 0.90068 1.22487 0.99439 0.97278 0.95700 1.22350 0.97703 0.93187 1.01826 1.22508 0.97047 0.97700 0.98869 1.21565 0.79934 0.94700 0.98782 0.90026 1.46165 1.08792 1.33260 1.47727 1.18020 0.84635 0.81525 0.80503 1.90688 1.83149 1.34325 1.36003 1.20763 0.93683 1.00059 1.03398 1.22919 0.94524 0.93807 0.91224 1.67818 1.00466 1.27059 1.25085 1.23012 0.99548 0.86219 0.89135 1.24161 0.98494 1.05658 1.07274 1.83983 1.08463 1.22580 1.40515 1.26065 0.94999 1.04546 1.03376 1.20206 1.01151 0.96320 1.00924 1.18501 0.92108 0.95234 0.95826 0.94454 0.80535 0.95564 0.97486 0.92402 0.91749 0.90084 0.90615 0.91175 0.90327 0.75426 0.81325 0.78329 0.77605 0.83117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.78 13.70 21.65 0.30 -60.48 16 2 C -0.10 -5.87 5.50 84.86 0.47 -5.41 16 3 Si 1.13 52.08 29.92 68.60 2.05 54.13 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.34 -18.90 9.99 84.03 0.84 -18.06 16 8 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 9 N -0.75 -37.46 5.46 -343.44 -1.88 -39.33 16 10 C 0.17 6.66 4.79 86.38 0.41 7.08 16 11 C -0.10 -3.10 2.86 -9.72 -0.03 -3.13 16 12 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 13 C -0.11 -3.11 6.11 31.94 0.20 -2.91 16 14 C -0.11 -2.42 6.83 31.72 0.22 -2.20 16 15 C -0.12 -2.74 6.59 31.32 0.21 -2.53 16 16 C 0.16 4.16 3.12 45.71 0.14 4.30 16 17 H 0.08 2.38 7.56 -2.39 -0.02 2.37 16 18 N -0.71 -18.73 4.29 -442.42 -1.90 -20.63 16 19 C 0.57 16.25 7.76 86.64 0.67 16.92 16 20 O -0.56 -18.46 14.12 -4.09 -0.06 -18.52 16 21 C -0.17 -4.52 5.94 -19.60 -0.12 -4.63 16 22 C 0.13 3.13 10.67 84.81 0.90 4.04 16 23 N -0.50 -11.70 10.32 -194.65 -2.01 -13.71 16 24 C 0.19 3.51 11.20 84.97 0.95 4.46 16 25 C -0.24 -4.65 6.52 22.98 0.15 -4.50 16 26 S 0.18 2.34 23.29 -56.49 -1.32 1.02 16 27 C -0.15 -2.20 11.10 66.69 0.74 -1.46 16 28 C -0.16 -3.41 9.43 21.57 0.20 -3.20 16 29 C 0.00 0.01 5.88 -21.24 -0.12 -0.11 16 30 H 0.25 15.16 6.77 -92.70 -0.63 14.53 16 31 H 0.36 18.66 6.41 -92.71 -0.59 18.06 16 32 H 0.03 0.98 6.34 -2.39 -0.02 0.96 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.84 8.00 -2.38 -0.02 1.82 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.55 7.92 -2.39 -0.02 1.54 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.41 10.17 4.55 -92.70 -0.42 9.75 16 41 H 0.17 3.69 6.37 -2.91 -0.02 3.68 16 42 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.21 1.49 8.06 -2.91 -0.02 1.46 16 44 H 0.15 3.74 6.28 -2.91 -0.02 3.73 16 Total: -1.00 -73.00 369.74 1.21 -71.79 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.18 Total: 37.08 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 5.84 Total: -11.34 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -5.49 Total: -134.16 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.06 Total: -18.52 kcal Atomic # 14 Polarization: 52.08 SS G_CDS: 2.05 Total: 54.13 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.32 Total: 1.02 kcal Total: -73.00 1.21 -71.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699026493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.103 kcal (2) G-P(sol) polarization free energy of solvation -73.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds