Wall clock time and date at job start Wed Apr 1 2020 02:52:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86800 * 119.99943 * 2 1
4 4 H 1.48500 * 109.46955 * 269.99360 * 3 2 1
5 5 H 1.48497 * 109.47070 * 29.99867 * 3 2 1
6 6 H 1.48497 * 109.46911 * 149.99789 * 3 2 1
7 7 C 1.38820 * 119.99767 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99669 * 180.02562 * 7 2 1
9 9 N 1.36936 * 120.00292 * 0.02562 * 7 2 1
10 10 C 1.46497 * 119.99862 * 179.97438 * 9 7 2
11 11 C 1.53003 * 109.46619 * 180.02562 * 10 9 7
12 12 H 1.08994 * 110.53903 * 307.60687 * 11 10 9
13 13 C 1.54885 * 110.48944 * 70.22727 * 11 10 9
14 14 C 1.54886 * 102.75009 * 156.61749 * 13 11 10
15 15 C 1.54267 * 104.19573 * 322.05480 * 14 13 11
16 16 C 1.53873 * 106.59578 * 23.61344 * 15 14 13
17 17 H 1.09008 * 110.03070 * 240.66138 * 16 15 14
18 18 N 1.46502 * 110.03266 * 119.28394 * 16 15 14
19 19 C 1.34775 * 119.99967 * 86.45098 * 18 16 15
20 20 O 1.21610 * 120.00190 * 0.02562 * 19 18 16
21 21 C 1.47365 * 120.00088 * 180.02562 * 19 18 16
22 22 C 1.38767 * 120.54880 * 359.97438 * 21 19 18
23 23 N 1.31903 * 121.11819 * 180.02562 * 22 21 19
24 24 C 1.31674 * 122.22162 * 359.97438 * 23 22 21
25 25 C 1.39295 * 121.13844 * 0.02562 * 24 23 22
26 26 S 1.75873 * 131.39517 * 180.02562 * 25 24 23
27 27 C 1.75546 * 91.52466 * 179.97438 * 26 25 24
28 28 C 1.32477 * 110.79392 * 359.97438 * 27 26 25
29 29 C 1.40004 * 115.78031 * 0.02562 * 28 27 26
30 30 H 0.97001 * 119.99980 * 0.02562 * 1 2 3
31 31 H 0.97002 * 119.99293 * 359.97438 * 9 7 2
32 32 H 1.08999 * 109.47039 * 59.99998 * 10 9 7
33 33 H 1.08996 * 109.46838 * 299.99826 * 10 9 7
34 34 H 1.09003 * 110.75689 * 38.29950 * 13 11 10
35 35 H 1.08999 * 110.75487 * 274.93284 * 13 11 10
36 36 H 1.08998 * 110.48871 * 203.37752 * 14 13 11
37 37 H 1.08999 * 110.48597 * 80.73694 * 14 13 11
38 38 H 1.08998 * 110.03522 * 264.32657 * 15 14 13
39 39 H 1.09005 * 110.02720 * 142.89233 * 15 14 13
40 40 H 0.97001 * 119.99787 * 266.44809 * 18 16 15
41 41 H 1.07998 * 119.44487 * 0.02562 * 22 21 19
42 42 H 1.07996 * 119.43125 * 179.72019 * 24 23 22
43 43 H 1.07996 * 124.60594 * 179.97438 * 27 26 25
44 44 H 1.08007 * 122.11167 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4978 2.0463 -1.4001
5 1 1.4476 2.6526 0.7000
6 1 3.5477 1.4402 0.7001
7 6 2.0103 -1.2022 0.0005
8 1 3.0903 -1.2022 0.0010
9 7 1.3256 -2.3882 0.0005
10 6 2.0581 -3.6568 0.0005
11 6 1.0638 -4.8197 -0.0001
12 1 0.3416 -4.7058 0.8082
13 6 0.3390 -4.9125 -1.3657
14 6 -0.1116 -6.3936 -1.4136
15 6 1.0598 -7.1663 -0.7729
16 6 1.8071 -6.1656 0.1258
17 1 2.8376 -6.0570 -0.2126
18 7 1.7820 -6.6246 1.5169
19 6 2.7252 -7.4782 1.9620
20 8 3.5975 -7.8670 1.2091
21 6 2.6997 -7.9403 3.3611
22 6 1.7100 -7.5034 4.2302
23 7 1.6767 -7.9094 5.4848
24 6 2.5696 -8.7425 5.9770
25 6 3.6037 -9.2395 5.1870
26 16 4.9203 -10.3457 5.5556
27 6 5.5333 -10.2373 3.9142
28 6 4.7812 -9.4274 3.1838
29 6 3.6932 -8.8453 3.8453
30 1 -0.4850 0.8401 -0.0004
31 1 0.3556 -2.3880 0.0005
32 1 2.6848 -3.7145 0.8905
33 1 2.6847 -3.7145 -0.8894
34 1 1.0252 -4.6908 -2.1831
35 1 -0.5228 -4.2456 -1.3918
36 1 -0.2611 -6.7137 -2.4448
37 1 -1.0238 -6.5338 -0.8336
38 1 1.7273 -7.5427 -1.5481
39 1 0.6783 -7.9934 -0.1741
40 1 1.0865 -6.3140 2.1176
41 1 0.9542 -6.8194 3.8734
42 1 2.5021 -9.0419 7.0125
43 1 6.4051 -10.7599 3.5493
44 1 4.9945 -9.2280 2.1440
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699026495.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:52:17
Heat of formation + Delta-G solvation = 26.467439 kcal
Electronic energy + Delta-G solvation = -26997.170090 eV
Core-core repulsion = 23233.702279 eV
Total energy + Delta-G solvation = -3763.467811 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.125 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.15523 -39.64314 -37.90321 -36.66658 -34.51648 -33.76202 -31.87125 -31.41119
-30.68310 -28.61986 -27.65963 -25.04453 -24.83714 -24.21973 -22.17963 -21.53751
-21.27704 -20.14538 -19.91399 -18.56216 -17.68055 -17.14718 -16.69620 -16.45222
-16.03770 -15.37161 -14.97157 -14.81581 -14.50001 -14.48181 -14.37349 -14.11096
-13.69393 -13.46249 -13.20156 -13.04864 -12.85034 -12.59481 -12.38235 -12.14207
-11.82141 -11.39673 -11.29932 -10.97551 -10.86138 -10.77956 -10.52489 -10.46848
-10.38646 -10.33370 -10.25834 -9.99713 -9.75194 -9.69576 -9.45099 -9.08038
-8.86960 -8.26815 -6.91890 -5.76782 -3.04998 -0.11517 0.38055 1.00809
1.45080 1.97749 2.61443 2.99741 3.43916 3.49293 3.49766 3.50790
3.91202 4.11366 4.34231 4.39654 4.53748 4.68945 4.70467 4.80329
4.89856 4.97556 5.00949 5.18654 5.43121 5.51770 5.54361 5.60722
5.63542 5.74115 5.75627 5.79524 5.88309 5.93973 6.01319 6.03618
6.15768 6.19401 6.26677 6.50477 6.52193 6.54497 6.76378 6.88004
7.36552 7.41820 7.70681 8.06120 8.42369 9.53769 10.11141 10.46193
11.46133
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.012846 B = 0.002448 C = 0.002256
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2179.076151 B =11437.421410 C =12410.370252
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.014 4.014
3 Si 0.906 3.094
4 H -0.290 1.290
5 H -0.291 1.291
6 H -0.282 1.282
7 C -0.238 4.238
8 H 0.069 0.931
9 N -0.730 5.730
10 C 0.161 3.839
11 C -0.102 4.102
12 H 0.080 0.920
13 C -0.110 4.110
14 C -0.125 4.125
15 C -0.131 4.131
16 C 0.147 3.853
17 H 0.095 0.905
18 N -0.711 5.711
19 C 0.564 3.436
20 O -0.533 6.533
21 C -0.148 4.148
22 C 0.128 3.872
23 N -0.473 5.473
24 C 0.180 3.820
25 C -0.218 4.218
26 S 0.118 5.882
27 C -0.172 4.172
28 C -0.123 4.123
29 C 0.017 3.983
30 H 0.255 0.745
31 H 0.384 0.616
32 H 0.017 0.983
33 H 0.021 0.979
34 H 0.071 0.929
35 H 0.075 0.925
36 H 0.064 0.936
37 H 0.063 0.937
38 H 0.069 0.931
39 H 0.064 0.936
40 H 0.399 0.601
41 H 0.166 0.834
42 H 0.166 0.834
43 H 0.176 0.824
44 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.931 -24.753 8.896 26.761
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.210 4.210
3 Si 0.737 3.263
4 H -0.217 1.217
5 H -0.218 1.218
6 H -0.208 1.208
7 C -0.369 4.369
8 H 0.087 0.913
9 N -0.374 5.374
10 C 0.033 3.967
11 C -0.122 4.122
12 H 0.098 0.902
13 C -0.148 4.148
14 C -0.163 4.163
15 C -0.169 4.169
16 C 0.042 3.958
17 H 0.113 0.887
18 N -0.361 5.361
19 C 0.350 3.650
20 O -0.411 6.411
21 C -0.155 4.155
22 C -0.026 4.026
23 N -0.182 5.182
24 C 0.013 3.987
25 C -0.335 4.335
26 S 0.380 5.620
27 C -0.307 4.307
28 C -0.152 4.152
29 C 0.001 3.999
30 H 0.065 0.935
31 H 0.217 0.783
32 H 0.035 0.965
33 H 0.039 0.961
34 H 0.090 0.910
35 H 0.094 0.906
36 H 0.082 0.918
37 H 0.082 0.918
38 H 0.088 0.912
39 H 0.083 0.917
40 H 0.235 0.765
41 H 0.183 0.817
42 H 0.183 0.817
43 H 0.193 0.807
44 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges 5.504 -25.355 10.103 27.843
hybrid contribution 0.083 1.593 -1.440 2.149
sum 5.587 -23.762 8.663 25.902
Atomic orbital electron populations
1.69655 1.05077 1.25621 1.57927 1.24725 0.95524 0.97646 1.03085
0.86198 0.78678 0.83866 0.77525 1.21726 1.21775 1.20787 1.19228
0.91026 0.84188 1.42492 0.91281 1.42316 1.05805 0.99845 1.89481
1.20681 0.92900 0.85185 0.97897 1.22441 0.97919 0.93080 0.98712
0.90171 1.22456 1.00542 0.95237 0.96584 1.22392 0.97582 0.95946
1.00372 1.22541 0.97582 0.97862 0.98951 1.21777 1.01375 0.93116
0.79484 0.88674 1.46127 1.29976 1.46600 1.13435 1.17803 0.81803
0.79138 0.86227 1.90724 1.36273 1.56919 1.57154 1.20871 0.97816
1.01084 0.95705 1.22807 0.95511 0.95777 0.88464 1.67763 1.24804
1.11349 1.14286 1.22419 0.86941 0.90142 0.99231 1.23878 1.04018
1.07009 0.98644 1.84184 1.21228 1.45561 1.10983 1.25611 1.04679
1.03935 0.96510 1.20304 0.93978 0.97572 1.03348 1.18259 0.94744
0.95188 0.91737 0.93544 0.78259 0.96487 0.96099 0.91000 0.90634
0.91772 0.91800 0.91231 0.91740 0.76458 0.81744 0.81668 0.80712
0.81398
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16
2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16
3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16
4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16
8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16
9 N -0.73 -18.14 5.49 -59.91 -0.33 -18.47 16
10 C 0.16 3.19 5.54 -4.04 -0.02 3.16 16
11 C -0.10 -1.54 2.58 -88.96 -0.23 -1.77 16
12 H 0.08 1.19 7.73 -51.93 -0.40 0.79 16
13 C -0.11 -1.58 6.19 -24.74 -0.15 -1.73 16
14 C -0.13 -1.44 6.83 -25.07 -0.17 -1.61 16
15 C -0.13 -1.54 6.59 -25.61 -0.17 -1.71 16
16 C 0.15 1.95 2.79 -66.81 -0.19 1.76 16
17 H 0.10 1.44 7.30 -51.92 -0.38 1.06 16
18 N -0.71 -8.50 4.94 -53.81 -0.27 -8.77 16
19 C 0.56 7.48 7.76 -12.55 -0.10 7.39 16
20 O -0.53 -8.37 14.14 5.27 0.07 -8.30 16
21 C -0.15 -1.76 5.94 -104.21 -0.62 -2.38 16
22 C 0.13 1.35 10.67 -17.33 -0.18 1.17 16
23 N -0.47 -5.14 10.32 -12.87 -0.13 -5.27 16
24 C 0.18 1.67 11.20 -17.23 -0.19 1.48 16
25 C -0.22 -2.15 6.52 -38.48 -0.25 -2.40 16
26 S 0.12 0.89 23.29 -107.50 -2.50 -1.61 16
27 C -0.17 -1.38 11.10 28.82 0.32 -1.06 16
28 C -0.12 -1.32 9.43 -40.84 -0.39 -1.70 16
29 C 0.02 0.20 5.88 -106.74 -0.63 -0.42 16
30 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16
31 H 0.38 9.91 7.64 -40.82 -0.31 9.59 16
32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16
33 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16
34 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16
35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
39 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16
40 H 0.40 3.96 6.38 -40.82 -0.26 3.70 16
41 H 0.17 1.36 6.37 -52.49 -0.33 1.03 16
42 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16
43 H 0.18 0.90 8.06 -52.49 -0.42 0.47 16
44 H 0.17 1.97 6.28 -52.48 -0.33 1.64 16
LS Contribution 375.20 15.07 5.65 5.65
Total: -1.00 -33.02 375.20 -10.78 -43.80
By element:
Atomic # 1 Polarization: 15.71 SS G_CDS: -5.76 Total: 9.94 kcal
Atomic # 6 Polarization: -3.93 SS G_CDS: -3.22 Total: -7.15 kcal
Atomic # 7 Polarization: -59.82 SS G_CDS: 0.00 Total: -59.82 kcal
Atomic # 8 Polarization: -8.37 SS G_CDS: 0.07 Total: -8.30 kcal
Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal
Atomic # 16 Polarization: 0.89 SS G_CDS: -2.50 Total: -1.61 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -33.02 -10.78 -43.80 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699026495.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.272 kcal
(2) G-P(sol) polarization free energy of solvation -33.023 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.249 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.804 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.467 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds