Wall clock time and date at job start Wed Apr 1 2020 03:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28054 * 124.24422 * 2 1 4 4 C 1.34413 * 117.91601 * 179.97438 * 3 2 1 5 5 C 1.41245 * 129.48361 * 179.97438 * 4 3 2 6 6 C 1.35747 * 120.63830 * 180.02562 * 5 4 3 7 7 C 1.40199 * 120.61172 * 0.02562 * 6 5 4 8 8 C 1.47592 * 120.12262 * 179.97438 * 7 6 5 9 9 O 1.21590 * 119.99736 * 179.97438 * 8 7 6 10 10 N 1.34779 * 120.00187 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00196 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46967 * 325.00170 * 11 10 8 13 13 C 1.52997 * 109.47170 * 204.99986 * 11 10 8 14 14 N 1.46505 * 109.47212 * 54.99826 * 13 11 10 15 15 C 1.36936 * 119.99992 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00093 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00176 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00265 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46725 * 59.99976 * 19 17 15 21 21 H 1.48498 * 109.47172 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46920 * 300.00189 * 19 17 15 23 23 C 1.52994 * 109.46849 * 84.99779 * 11 10 8 24 24 C 1.52999 * 117.50412 * 8.74867 * 23 11 10 25 25 C 1.53002 * 117.50104 * 300.08575 * 23 11 10 26 26 C 1.39177 * 119.74833 * 0.23313 * 7 6 5 27 27 C 1.38910 * 119.84653 * 359.51243 * 26 7 6 28 28 S 1.70646 * 124.23614 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47588 * 90.02508 * 1 2 3 30 30 H 1.09001 * 109.47520 * 210.02873 * 1 2 3 31 31 H 1.09003 * 109.46997 * 330.02483 * 1 2 3 32 32 H 1.08000 * 119.67986 * 0.02562 * 5 4 3 33 33 H 1.07997 * 119.69062 * 179.97438 * 6 5 4 34 34 H 0.96998 * 119.99752 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47153 * 294.99818 * 13 11 10 36 36 H 1.09001 * 109.46832 * 175.00009 * 13 11 10 37 37 H 0.96996 * 119.99606 * 0.02562 * 14 13 11 38 38 H 0.97001 * 120.00803 * 179.97438 * 18 17 15 39 39 H 1.09003 * 115.54830 * 154.41823 * 23 11 10 40 40 H 1.09003 * 117.49323 * 359.97438 * 24 23 11 41 41 H 1.09003 * 117.50071 * 145.01968 * 24 23 11 42 42 H 1.09000 * 117.50257 * 214.97832 * 25 23 11 43 43 H 1.09002 * 117.49965 * 359.97438 * 25 23 11 44 44 H 1.08000 * 120.07256 * 179.72080 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0586 0.0000 4 6 3.5635 0.9104 0.0005 5 6 4.5763 1.8949 0.0002 6 6 5.8865 1.5396 0.0003 7 6 6.2597 0.1882 0.0003 8 6 7.6874 -0.1860 -0.0001 9 8 8.0085 -1.3587 0.0003 10 7 8.6352 0.7723 0.0000 11 6 10.0524 0.4009 0.0002 12 1 10.1903 -0.5056 0.5896 13 6 10.8770 1.5362 0.6100 14 7 10.3570 1.8569 1.9416 15 6 10.9411 2.8480 2.6843 16 1 11.7849 3.3936 2.2883 17 6 10.4488 3.1515 3.9461 18 7 9.4208 2.4863 4.4289 19 14 11.2452 4.5040 4.9590 20 1 11.1596 5.7901 4.2217 21 1 10.5377 4.6310 6.2585 22 1 12.6708 4.1664 5.2018 23 6 10.5139 0.1501 -1.4367 24 6 9.5461 0.5160 -2.5638 25 6 9.8050 -0.9539 -2.2239 26 6 5.2788 -0.7991 -0.0048 27 6 3.9368 -0.4404 0.0004 28 16 2.4671 -1.4108 0.0006 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5135 32 1 4.3058 2.9405 -0.0002 33 1 6.6483 2.3051 -0.0004 34 1 8.3790 1.7078 0.0001 35 1 10.8099 2.4174 -0.0282 36 1 11.9185 1.2253 0.6918 37 1 9.5994 1.3666 2.2973 38 1 9.0769 2.6981 5.3109 39 1 11.5785 0.2951 -1.6206 40 1 8.5803 0.9351 -2.2814 41 1 9.9739 0.9015 -3.4893 42 1 10.4031 -1.5348 -2.9261 43 1 9.0101 -1.5018 -1.7180 44 1 5.5604 -1.8418 -0.0094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699594608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:01 Heat of formation + Delta-G solvation = 44.237460 kcal Electronic energy + Delta-G solvation = -27182.777273 eV Core-core repulsion = 23420.080028 eV Total energy + Delta-G solvation = -3762.697245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.88736 -41.00905 -38.71116 -37.68047 -36.54057 -34.91699 -33.26702 -32.52212 -32.30907 -30.24365 -29.03243 -26.00291 -25.40946 -24.42028 -23.45375 -22.94726 -22.52623 -21.71288 -20.90023 -19.86080 -19.24566 -18.56084 -17.49113 -17.26487 -16.98431 -16.60939 -16.40592 -16.25381 -15.75426 -15.25151 -15.17333 -15.08487 -15.04598 -14.48551 -14.42599 -14.25197 -13.98890 -13.67929 -13.55397 -13.13411 -13.11721 -12.82329 -12.70653 -12.67262 -12.51468 -12.24779 -12.12500 -12.02279 -11.82779 -11.33774 -11.32854 -11.02250 -10.94443 -10.79293 -10.77439 -10.05859 -9.74390 -9.25836 -8.99997 -7.92549 -5.22271 -1.00282 -0.01982 0.08615 0.55838 0.83358 1.49299 1.51536 1.57624 1.84980 2.08587 2.56803 2.63193 2.77800 2.95879 3.41283 3.42470 3.53592 3.67490 3.83532 3.97075 3.97324 4.04610 4.10229 4.19578 4.24646 4.42968 4.50759 4.56775 4.63125 4.65164 4.67002 4.83840 4.85365 4.89767 4.96323 5.05449 5.08210 5.13268 5.15079 5.27206 5.40076 5.41464 5.51636 5.55251 6.27277 6.46297 6.48306 7.13233 7.35214 8.08330 8.32183 9.29900 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009929 B = 0.003122 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.240093 B = 8966.012170 C =11059.229119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.099 3.901 3 N -0.502 5.502 4 C 0.096 3.904 5 C -0.077 4.077 6 C -0.067 4.067 7 C -0.130 4.130 8 C 0.562 3.438 9 O -0.565 6.565 10 N -0.695 5.695 11 C 0.178 3.822 12 H 0.064 0.936 13 C 0.150 3.850 14 N -0.743 5.743 15 C -0.242 4.242 16 H 0.080 0.920 17 C -0.073 4.073 18 N -0.967 5.967 19 Si 0.972 3.028 20 H -0.275 1.275 21 H -0.300 1.300 22 H -0.281 1.281 23 C -0.164 4.164 24 C -0.163 4.163 25 C -0.191 4.191 26 C -0.009 4.009 27 C -0.221 4.221 28 S 0.145 5.855 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.409 0.591 35 H 0.043 0.957 36 H 0.039 0.961 37 H 0.374 0.626 38 H 0.249 0.751 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.654 -5.637 -15.683 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.184 4.184 3 N -0.218 5.218 4 C -0.026 4.026 5 C -0.097 4.097 6 C -0.089 4.089 7 C -0.137 4.137 8 C 0.351 3.649 9 O -0.446 6.446 10 N -0.346 5.346 11 C 0.073 3.927 12 H 0.083 0.917 13 C 0.023 3.977 14 N -0.386 5.386 15 C -0.374 4.374 16 H 0.098 0.902 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.801 3.199 20 H -0.201 1.201 21 H -0.226 1.226 22 H -0.207 1.207 23 C -0.184 4.184 24 C -0.200 4.200 25 C -0.227 4.227 26 C -0.032 4.032 27 C -0.340 4.340 28 S 0.402 5.598 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.175 0.825 33 H 0.171 0.829 34 H 0.247 0.753 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.206 0.794 38 H 0.058 0.942 39 H 0.145 0.855 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.845 -6.870 -15.651 23.307 hybrid contribution 0.898 1.528 1.192 2.136 sum -14.947 -5.342 -14.459 21.471 Atomic orbital electron populations 1.20852 0.81521 1.06074 1.06024 1.27690 1.03679 0.90429 0.96627 1.66238 1.03866 1.32489 1.19182 1.19605 0.89853 0.92088 1.01053 1.20489 0.89920 0.99582 0.99753 1.20995 0.96766 0.94933 0.96188 1.19829 0.92488 0.94547 1.06787 1.18187 0.85708 0.85347 0.75702 1.90685 1.83187 1.19128 1.51649 1.45813 1.05829 1.09916 1.73005 1.20558 0.79435 0.97706 0.94992 0.91745 1.21049 0.95750 0.94986 0.85901 1.42519 1.38255 1.42436 1.15409 1.19574 1.10656 1.10021 0.97162 0.90249 1.25526 0.99377 1.02493 0.99110 1.69823 1.28237 1.45248 1.18466 0.85245 0.77551 0.79491 0.77634 1.20094 1.22648 1.20690 1.22614 0.99213 1.05545 0.91002 1.22971 1.00348 0.97767 0.98918 1.23285 1.04007 0.92138 1.03310 1.20407 0.88621 1.00249 0.93957 1.23929 0.99527 0.97665 1.12832 1.83771 0.93443 1.09392 1.73229 0.86974 0.87248 0.88412 0.82498 0.82863 0.75323 0.93931 0.94266 0.79387 0.94220 0.85484 0.89492 0.87131 0.87909 0.88970 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.44 71.24 0.74 -0.02 16 2 C 0.10 1.86 7.29 88.66 0.65 2.51 16 3 N -0.50 -12.68 10.56 -182.20 -1.92 -14.60 16 4 C 0.10 2.61 7.00 39.95 0.28 2.89 16 5 C -0.08 -1.96 10.03 22.43 0.23 -1.74 16 6 C -0.07 -1.76 9.44 22.17 0.21 -1.55 16 7 C -0.13 -3.88 5.87 -20.11 -0.12 -3.99 16 8 C 0.56 18.81 6.60 86.71 0.57 19.38 16 9 O -0.57 -21.73 13.36 -4.00 -0.05 -21.78 16 10 N -0.70 -21.92 3.01 -445.65 -1.34 -23.26 16 11 C 0.18 5.86 2.59 44.99 0.12 5.98 16 12 H 0.06 2.50 7.58 -2.39 -0.02 2.49 16 13 C 0.15 5.56 5.80 86.38 0.50 6.06 16 14 N -0.74 -36.05 5.43 -343.45 -1.87 -37.92 16 15 C -0.24 -13.02 9.99 84.03 0.84 -12.18 16 16 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 17 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 18 N -0.97 -58.61 13.06 21.65 0.28 -58.33 16 19 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 C -0.16 -4.34 5.70 -10.80 -0.06 -4.41 16 24 C -0.16 -3.81 9.74 30.62 0.30 -3.51 16 25 C -0.19 -5.02 9.82 30.62 0.30 -4.72 16 26 C -0.01 -0.27 9.62 22.66 0.22 -0.05 16 27 C -0.22 -5.87 6.54 22.89 0.15 -5.72 16 28 S 0.14 2.79 23.11 -56.49 -1.31 1.49 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.15 3.52 6.38 -2.91 -0.02 3.50 16 34 H 0.41 12.06 6.62 -92.71 -0.61 11.45 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.37 19.83 7.33 -92.71 -0.68 19.15 16 38 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.13 2.95 8.11 -2.39 -0.02 2.93 16 40 H 0.09 2.13 6.67 -2.39 -0.02 2.11 16 41 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.09 2.96 5.01 -2.39 -0.01 2.94 16 44 H 0.14 3.99 7.64 -2.91 -0.02 3.97 16 Total: -1.00 -70.66 377.92 0.98 -69.68 By element: Atomic # 1 Polarization: 42.21 SS G_CDS: -0.23 Total: 41.98 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 5.39 Total: -4.68 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -4.85 Total: -134.11 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.05 Total: -21.78 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.31 Total: 1.49 kcal Total: -70.66 0.98 -69.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699594608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.919 kcal (2) G-P(sol) polarization free energy of solvation -70.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds