Wall clock time and date at job start Wed Apr 1 2020 03:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 110.91991 * 2 1 4 4 N 1.46509 * 109.46990 * 62.44555 * 3 2 1 5 5 C 1.36931 * 119.99850 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00228 * 0.02562 * 5 4 3 7 7 C 1.38823 * 119.99919 * 179.97438 * 5 4 3 8 8 N 1.31616 * 119.99617 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00042 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47063 * 60.00358 * 9 7 5 11 11 H 1.48498 * 109.46934 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47106 * 300.00252 * 9 7 5 13 13 C 1.55162 * 111.00676 * 236.09736 * 2 1 3 14 14 C 1.54324 * 102.93989 * 277.43235 * 13 2 1 15 15 N 1.47023 * 107.27292 * 337.80164 * 14 13 2 16 16 C 1.34777 * 125.64868 * 178.90740 * 15 14 13 17 17 O 1.21587 * 120.00311 * 174.79881 * 16 15 14 18 18 C 1.47595 * 120.00168 * 354.79782 * 16 15 14 19 19 C 1.40195 * 120.12890 * 187.95587 * 18 16 15 20 20 C 1.35750 * 120.61562 * 179.97438 * 19 18 16 21 21 C 1.41241 * 120.63637 * 0.02562 * 20 19 18 22 22 N 1.34411 * 129.48295 * 179.97438 * 21 20 19 23 23 C 1.28066 * 117.91622 * 180.02562 * 22 21 20 24 24 S 1.70639 * 111.51649 * 359.97438 * 23 22 21 25 25 C 1.40147 * 118.74212 * 0.02562 * 21 20 19 26 26 C 1.38912 * 120.41369 * 359.74133 * 25 21 20 27 27 C 1.47425 * 108.70430 * 358.94350 * 15 14 13 28 28 H 1.09001 * 109.46949 * 297.54887 * 1 2 3 29 29 H 1.09000 * 109.47074 * 57.55469 * 1 2 3 30 30 H 1.09003 * 109.47077 * 177.55366 * 1 2 3 31 31 H 1.09004 * 109.47696 * 182.44718 * 3 2 1 32 32 H 1.08997 * 109.47355 * 302.45156 * 3 2 1 33 33 H 0.97000 * 120.00032 * 0.02562 * 4 3 2 34 34 H 0.97001 * 119.99690 * 179.97438 * 8 7 5 35 35 H 1.08990 * 110.72054 * 159.06830 * 13 2 1 36 36 H 1.08998 * 110.71574 * 35.78821 * 13 2 1 37 37 H 1.09000 * 109.88029 * 218.38972 * 14 13 2 38 38 H 1.09000 * 109.88680 * 97.22417 * 14 13 2 39 39 H 1.08002 * 119.68888 * 359.95814 * 19 18 16 40 40 H 1.07998 * 119.68047 * 179.97438 * 20 19 18 41 41 H 1.08001 * 124.23968 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.08025 * 180.25757 * 26 25 21 43 43 H 1.08995 * 110.36304 * 142.96077 * 27 15 14 44 44 H 1.08992 * 110.36876 * 265.28947 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 7 1.6538 2.1134 1.2246 5 6 2.0268 3.4121 1.4467 6 1 2.6321 3.9320 0.7190 7 6 1.6260 4.0606 2.6068 8 7 0.8879 3.4271 3.4934 9 14 2.1343 5.8325 2.9095 10 1 1.6084 6.6916 1.8183 11 1 1.5828 6.2903 4.2100 12 1 3.6161 5.9239 2.9409 13 6 2.0862 -0.8079 -1.2022 14 6 2.0284 -2.2646 -0.6960 15 7 2.0138 -2.2159 0.7734 16 6 1.9456 -3.2828 1.5940 17 8 2.0354 -3.1312 2.7971 18 6 1.7619 -4.6354 1.0324 19 6 1.5240 -5.7241 1.8830 20 6 1.3531 -6.9722 1.3771 21 6 1.4122 -7.1985 -0.0158 22 7 1.2709 -8.3456 -0.7021 23 6 1.3677 -8.2967 -1.9781 24 16 1.6668 -6.7074 -2.5226 25 6 1.6512 -6.1102 -0.8659 26 6 1.8206 -4.8341 -0.3439 27 6 2.0853 -0.8067 1.2004 28 1 -0.3633 0.4753 0.9112 29 1 -0.3633 0.5513 -0.8672 30 1 -0.3633 -1.0268 -0.0439 31 1 3.1651 1.4020 -0.0439 32 1 1.6909 1.9654 -0.8672 33 1 1.1104 1.6462 1.8784 34 1 0.6082 3.8801 4.3043 35 1 3.1133 -0.5161 -1.4209 36 1 1.4524 -0.6792 -2.0796 37 1 2.9063 -2.8117 -1.0400 38 1 1.1218 -2.7480 -1.0599 39 1 1.4764 -5.5685 2.9507 40 1 1.1710 -7.8001 2.0462 41 1 1.2713 -9.1538 -2.6281 42 1 2.0003 -3.9986 -1.0042 43 1 1.4671 -0.6462 2.0836 44 1 3.1181 -0.5234 1.4025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699854039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:29 Heat of formation + Delta-G solvation = 64.257558 kcal Electronic energy + Delta-G solvation = -27292.152650 eV Core-core repulsion = 23530.323542 eV Total energy + Delta-G solvation = -3761.829108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.13151 -40.10574 -38.22174 -36.80418 -34.99179 -32.96670 -31.56400 -30.68990 -30.35541 -29.26790 -26.93756 -26.03554 -25.06730 -24.35062 -23.13769 -22.18787 -21.81901 -20.35410 -18.96817 -18.45144 -17.69293 -16.97568 -16.82937 -16.20345 -15.72824 -15.57042 -15.16495 -14.78093 -14.53071 -14.34342 -14.10153 -13.99523 -13.64079 -13.56343 -13.20116 -12.96661 -12.89688 -12.60586 -12.19782 -12.13385 -12.11045 -11.73517 -11.66445 -11.12555 -11.00671 -10.82728 -10.61698 -10.55701 -10.46901 -10.37445 -10.14836 -9.97746 -9.94115 -9.63598 -9.15673 -8.87798 -8.63049 -8.55404 -6.92866 -5.75680 -3.04935 -0.24406 0.76298 0.79471 1.25334 1.64245 2.76232 2.87218 3.44676 3.47862 3.49059 3.50389 3.54781 4.09181 4.21750 4.45100 4.55623 4.63318 4.72550 4.78221 4.81799 4.86426 5.06295 5.16629 5.21906 5.35184 5.39963 5.57747 5.58309 5.63377 5.71942 5.78181 5.87646 5.92213 6.04371 6.08186 6.14067 6.18197 6.23673 6.34564 6.45467 6.59523 6.69414 6.78420 7.10863 7.44987 7.69544 8.08136 8.42567 9.53925 10.10470 10.44825 11.46869 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.024964 B = 0.002275 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.353967 B =12302.208002 C =13115.280075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 C 0.170 3.830 4 N -0.730 5.730 5 C -0.242 4.242 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.124 4.124 14 C 0.089 3.911 15 N -0.608 5.608 16 C 0.570 3.430 17 O -0.526 6.526 18 C -0.103 4.103 19 C -0.053 4.053 20 C -0.071 4.071 21 C 0.095 3.905 22 N -0.467 5.467 23 C 0.068 3.932 24 S 0.107 5.893 25 C -0.191 4.191 26 C -0.073 4.073 27 C 0.122 3.878 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.022 0.978 32 H 0.025 0.975 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.206 0.794 42 H 0.171 0.829 43 H 0.087 0.913 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 -23.814 -15.260 28.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.079 4.079 3 C 0.042 3.958 4 N -0.375 5.375 5 C -0.373 4.373 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.163 4.163 14 C -0.034 4.034 15 N -0.341 5.341 16 C 0.358 3.642 17 O -0.404 6.404 18 C -0.110 4.110 19 C -0.075 4.075 20 C -0.092 4.092 21 C -0.026 4.026 22 N -0.180 5.180 23 C -0.236 4.236 24 S 0.361 5.639 25 C -0.310 4.310 26 C -0.095 4.095 27 C 0.001 3.999 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.219 0.781 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.222 0.778 42 H 0.188 0.812 43 H 0.105 0.895 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.021 -23.791 -15.348 28.330 hybrid contribution 0.025 0.709 1.169 1.368 sum 1.046 -23.082 -14.178 27.109 Atomic orbital electron populations 1.21683 0.93260 1.00542 1.03226 1.21980 0.96515 0.96135 0.93291 1.20589 0.96180 0.87882 0.91136 1.42360 1.63245 1.12177 1.19749 1.19147 1.26724 0.88708 1.02739 0.91255 1.24744 1.00571 0.98351 0.97172 1.69644 1.40795 1.36631 1.10901 0.86273 0.78013 0.84847 0.77058 1.21312 1.21720 1.21291 1.22796 1.02667 0.92363 0.98438 1.22535 1.00893 0.98891 0.81082 1.48413 1.72011 1.07187 1.06462 1.17677 0.77549 0.83117 0.85823 1.90839 1.50094 1.85421 1.14005 1.19948 1.03846 0.94258 0.92966 1.20830 0.95108 0.90394 1.01166 1.20325 1.00085 0.97692 0.91103 1.19447 1.01537 0.86171 0.95428 1.66204 1.16505 1.28415 1.06858 1.28225 0.99898 1.01465 0.94000 1.84058 1.71146 1.03843 1.04833 1.23776 1.11126 0.99316 0.96733 1.22056 0.96173 0.95730 0.95528 1.22409 1.02133 0.77150 0.98228 0.91182 0.92383 0.93638 0.96063 0.95732 0.78077 0.93401 0.89960 0.89620 0.90683 0.90596 0.83242 0.84053 0.77791 0.81241 0.89501 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.42 37.16 0.31 -1.61 16 2 C -0.08 -1.15 0.62 -152.36 -0.09 -1.24 16 3 C 0.17 3.17 5.23 -4.04 -0.02 3.15 16 4 N -0.73 -17.76 5.17 -59.90 -0.31 -18.07 16 5 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 9 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C -0.12 -1.29 5.92 -24.89 -0.15 -1.44 16 14 C 0.09 0.87 4.48 -3.06 -0.01 0.86 16 15 N -0.61 -8.36 3.31 -175.93 -0.58 -8.94 16 16 C 0.57 8.59 7.80 -12.44 -0.10 8.50 16 17 O -0.53 -9.95 16.66 5.29 0.09 -9.86 16 18 C -0.10 -1.26 5.87 -104.99 -0.62 -1.87 16 19 C -0.05 -0.60 9.49 -39.74 -0.38 -0.97 16 20 C -0.07 -0.72 10.03 -39.33 -0.39 -1.12 16 21 C 0.10 1.03 7.00 -84.88 -0.59 0.44 16 22 N -0.47 -4.73 10.56 -12.83 -0.14 -4.86 16 23 C 0.07 0.47 12.11 51.19 0.62 1.09 16 24 S 0.11 0.74 23.17 -107.50 -2.49 -1.76 16 25 C -0.19 -1.89 6.54 -38.62 -0.25 -2.14 16 26 C -0.07 -0.74 8.62 -38.98 -0.34 -1.07 16 27 C 0.12 1.99 5.31 -2.52 -0.01 1.98 16 28 H 0.07 1.24 7.20 -51.93 -0.37 0.87 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.60 7.81 -51.93 -0.41 0.19 16 31 H 0.02 0.40 8.11 -51.93 -0.42 -0.02 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.38 9.93 6.31 -40.82 -0.26 9.67 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 36 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 37 H 0.08 0.60 6.81 -51.93 -0.35 0.24 16 38 H 0.08 0.64 6.66 -51.93 -0.35 0.29 16 39 H 0.15 1.61 7.66 -52.49 -0.40 1.21 16 40 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.21 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.17 1.40 2.75 -57.94 -0.16 1.24 16 43 H 0.09 1.67 7.82 -51.93 -0.41 1.26 16 44 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 LS Contribution 369.51 15.07 5.57 5.57 Total: -1.00 -34.07 369.51 -10.05 -44.12 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.61 Total: 6.58 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.27 Total: -2.69 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.30 Total: -59.27 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.49 Total: -1.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.07 -10.05 -44.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699854039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.374 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds