Wall clock time and date at job start Wed Apr 1 2020 03:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 110.91991 * 2 1 4 4 N 1.46509 * 109.46990 * 62.44555 * 3 2 1 5 5 C 1.36931 * 119.99850 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00228 * 0.02562 * 5 4 3 7 7 C 1.38823 * 119.99919 * 179.97438 * 5 4 3 8 8 N 1.31616 * 119.99617 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00042 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47063 * 60.00358 * 9 7 5 11 11 H 1.48498 * 109.46934 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47106 * 300.00252 * 9 7 5 13 13 C 1.55162 * 111.00676 * 236.09736 * 2 1 3 14 14 C 1.54324 * 102.93989 * 277.43235 * 13 2 1 15 15 N 1.47023 * 107.27292 * 337.80164 * 14 13 2 16 16 C 1.34777 * 125.64868 * 178.90740 * 15 14 13 17 17 O 1.21587 * 120.00311 * 174.79881 * 16 15 14 18 18 C 1.47595 * 120.00168 * 354.79782 * 16 15 14 19 19 C 1.40195 * 120.12890 * 187.95587 * 18 16 15 20 20 C 1.35750 * 120.61562 * 179.97438 * 19 18 16 21 21 C 1.41241 * 120.63637 * 0.02562 * 20 19 18 22 22 N 1.34411 * 129.48295 * 179.97438 * 21 20 19 23 23 C 1.28066 * 117.91622 * 180.02562 * 22 21 20 24 24 S 1.70639 * 111.51649 * 359.97438 * 23 22 21 25 25 C 1.40147 * 118.74212 * 0.02562 * 21 20 19 26 26 C 1.38912 * 120.41369 * 359.74133 * 25 21 20 27 27 C 1.47425 * 108.70430 * 358.94350 * 15 14 13 28 28 H 1.09001 * 109.46949 * 297.54887 * 1 2 3 29 29 H 1.09000 * 109.47074 * 57.55469 * 1 2 3 30 30 H 1.09003 * 109.47077 * 177.55366 * 1 2 3 31 31 H 1.09004 * 109.47696 * 182.44718 * 3 2 1 32 32 H 1.08997 * 109.47355 * 302.45156 * 3 2 1 33 33 H 0.97000 * 120.00032 * 0.02562 * 4 3 2 34 34 H 0.97001 * 119.99690 * 179.97438 * 8 7 5 35 35 H 1.08990 * 110.72054 * 159.06830 * 13 2 1 36 36 H 1.08998 * 110.71574 * 35.78821 * 13 2 1 37 37 H 1.09000 * 109.88029 * 218.38972 * 14 13 2 38 38 H 1.09000 * 109.88680 * 97.22417 * 14 13 2 39 39 H 1.08002 * 119.68888 * 359.95814 * 19 18 16 40 40 H 1.07998 * 119.68047 * 179.97438 * 20 19 18 41 41 H 1.08001 * 124.23968 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.08025 * 180.25757 * 26 25 21 43 43 H 1.08995 * 110.36304 * 142.96077 * 27 15 14 44 44 H 1.08992 * 110.36876 * 265.28947 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 7 1.6538 2.1134 1.2246 5 6 2.0268 3.4121 1.4467 6 1 2.6321 3.9320 0.7190 7 6 1.6260 4.0606 2.6068 8 7 0.8879 3.4271 3.4934 9 14 2.1343 5.8325 2.9095 10 1 1.6084 6.6916 1.8183 11 1 1.5828 6.2903 4.2100 12 1 3.6161 5.9239 2.9409 13 6 2.0862 -0.8079 -1.2022 14 6 2.0284 -2.2646 -0.6960 15 7 2.0138 -2.2159 0.7734 16 6 1.9456 -3.2828 1.5940 17 8 2.0354 -3.1312 2.7971 18 6 1.7619 -4.6354 1.0324 19 6 1.5240 -5.7241 1.8830 20 6 1.3531 -6.9722 1.3771 21 6 1.4122 -7.1985 -0.0158 22 7 1.2709 -8.3456 -0.7021 23 6 1.3677 -8.2967 -1.9781 24 16 1.6668 -6.7074 -2.5226 25 6 1.6512 -6.1102 -0.8659 26 6 1.8206 -4.8341 -0.3439 27 6 2.0853 -0.8067 1.2004 28 1 -0.3633 0.4753 0.9112 29 1 -0.3633 0.5513 -0.8672 30 1 -0.3633 -1.0268 -0.0439 31 1 3.1651 1.4020 -0.0439 32 1 1.6909 1.9654 -0.8672 33 1 1.1104 1.6462 1.8784 34 1 0.6082 3.8801 4.3043 35 1 3.1133 -0.5161 -1.4209 36 1 1.4524 -0.6792 -2.0796 37 1 2.9063 -2.8117 -1.0400 38 1 1.1218 -2.7480 -1.0599 39 1 1.4764 -5.5685 2.9507 40 1 1.1710 -7.8001 2.0462 41 1 1.2713 -9.1538 -2.6281 42 1 2.0003 -3.9986 -1.0042 43 1 1.4671 -0.6462 2.0836 44 1 3.1181 -0.5234 1.4025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699854039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:28 Heat of formation + Delta-G solvation = 41.463718 kcal Electronic energy + Delta-G solvation = -27293.141065 eV Core-core repulsion = 23530.323542 eV Total energy + Delta-G solvation = -3762.817523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.03867 -41.01846 -39.38181 -37.66655 -36.57861 -34.53981 -32.59756 -32.15584 -31.22231 -30.46246 -28.07578 -27.44746 -26.20019 -25.37814 -24.42392 -23.35263 -22.67614 -21.33018 -20.24400 -19.31870 -19.09316 -18.34487 -17.67339 -17.28334 -16.70219 -16.59602 -16.42809 -15.90254 -15.68039 -15.49548 -15.39197 -14.95869 -14.86127 -14.66786 -14.48488 -14.43478 -13.81586 -13.58421 -13.51351 -13.37455 -13.02726 -12.95707 -12.81749 -12.76687 -12.61390 -12.22132 -12.05903 -11.87886 -11.68246 -11.51435 -11.31826 -11.27007 -11.20622 -10.91224 -10.67808 -9.98160 -9.71174 -9.19842 -8.96626 -7.92761 -5.21094 -0.97357 0.00373 0.19427 0.65139 0.88132 1.47176 1.50456 1.56464 1.75951 1.84057 2.57221 2.61112 2.95330 3.20296 3.37499 3.41391 3.49725 3.66038 3.85827 3.94599 4.05920 4.11150 4.16480 4.19945 4.29659 4.33517 4.41591 4.47619 4.61742 4.71311 4.78100 4.83142 4.86644 4.95539 4.98682 5.05865 5.07955 5.10493 5.17786 5.27057 5.30384 5.44620 5.47549 5.52223 6.28767 6.36629 6.49306 6.94389 7.35336 8.13110 8.34028 9.30760 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.024964 B = 0.002275 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.353967 B =12302.208002 C =13115.280075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C 0.167 3.833 4 N -0.745 5.745 5 C -0.240 4.240 6 H 0.079 0.921 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.973 3.027 10 H -0.275 1.275 11 H -0.300 1.300 12 H -0.279 1.279 13 C -0.111 4.111 14 C 0.081 3.919 15 N -0.605 5.605 16 C 0.565 3.435 17 O -0.583 6.583 18 C -0.126 4.126 19 C -0.062 4.062 20 C -0.077 4.077 21 C 0.088 3.912 22 N -0.504 5.504 23 C 0.078 3.922 24 S 0.170 5.830 25 C -0.217 4.217 26 C -0.055 4.055 27 C 0.127 3.873 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.025 0.975 32 H 0.036 0.964 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.245 0.755 42 H 0.192 0.808 43 H 0.043 0.957 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 -25.345 -19.996 32.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.072 4.072 3 C 0.041 3.959 4 N -0.388 5.388 5 C -0.372 4.372 6 H 0.097 0.903 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.802 3.198 10 H -0.201 1.201 11 H -0.226 1.226 12 H -0.205 1.205 13 C -0.149 4.149 14 C -0.040 4.040 15 N -0.337 5.337 16 C 0.356 3.644 17 O -0.464 6.464 18 C -0.133 4.133 19 C -0.084 4.084 20 C -0.098 4.098 21 C -0.034 4.034 22 N -0.218 5.218 23 C -0.224 4.224 24 S 0.425 5.575 25 C -0.336 4.336 26 C -0.077 4.077 27 C 0.004 3.996 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.137 0.863 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.158 0.842 40 H 0.172 0.828 41 H 0.261 0.739 42 H 0.208 0.792 43 H 0.061 0.939 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.611 -25.328 -20.195 32.434 hybrid contribution -0.127 1.037 2.447 2.661 sum 1.484 -24.291 -17.748 30.121 Atomic orbital electron populations 1.21604 0.93242 1.01419 1.01745 1.21845 0.96376 0.94111 0.94917 1.20796 0.96372 0.89852 0.88924 1.42615 1.63039 1.11674 1.21447 1.19620 1.25283 0.89909 1.02417 0.90265 1.25587 1.01591 1.02529 0.97466 1.69829 1.42933 1.38202 1.11377 0.85213 0.77788 0.80212 0.76565 1.20083 1.22640 1.20480 1.22830 1.03769 0.91135 0.97130 1.22920 1.03548 0.99341 0.78170 1.48434 1.71243 1.05621 1.08392 1.18219 0.76505 0.84393 0.85312 1.90797 1.52797 1.86354 1.16460 1.19682 1.06899 0.92436 0.94284 1.20792 0.95817 0.90909 1.00846 1.20416 1.00114 0.97472 0.91765 1.19691 1.00927 0.87043 0.95766 1.66275 1.18900 1.28311 1.08269 1.29025 0.96769 1.03125 0.93531 1.83878 1.69545 1.02612 1.01462 1.24075 1.11413 0.98977 0.99090 1.22156 0.94417 0.96576 0.94516 1.22113 1.00179 0.79532 0.97775 0.95319 0.90831 0.91821 0.95685 0.94579 0.79521 0.94217 0.88750 0.86342 0.87647 0.88107 0.84209 0.82848 0.73887 0.79222 0.93878 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.57 8.42 71.98 0.61 -2.96 16 2 C -0.07 -2.04 0.62 -50.79 -0.03 -2.07 16 3 C 0.17 6.13 5.23 86.38 0.45 6.58 16 4 N -0.74 -37.25 5.17 -343.44 -1.78 -39.02 16 5 C -0.24 -13.34 9.99 84.04 0.84 -12.50 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.65 5.50 84.87 0.47 -4.18 16 8 N -0.97 -61.20 13.06 21.65 0.28 -60.92 16 9 Si 0.97 46.74 29.55 68.60 2.03 48.76 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 C -0.11 -1.88 5.92 31.78 0.19 -1.69 16 14 C 0.08 1.31 4.48 86.73 0.39 1.70 16 15 N -0.61 -16.64 3.31 -828.78 -2.75 -19.39 16 16 C 0.56 17.83 7.80 86.71 0.68 18.51 16 17 O -0.58 -24.06 16.66 -3.99 -0.07 -24.13 16 18 C -0.13 -3.08 5.87 -20.11 -0.12 -3.20 16 19 C -0.06 -1.45 9.49 22.17 0.21 -1.24 16 20 C -0.08 -1.57 10.03 22.43 0.23 -1.34 16 21 C 0.09 1.76 7.00 39.95 0.28 2.03 16 22 N -0.50 -8.93 10.56 -194.45 -2.05 -10.98 16 23 C 0.08 0.76 12.11 130.79 1.58 2.34 16 24 S 0.17 1.57 23.17 -56.49 -1.31 0.26 16 25 C -0.22 -3.68 6.54 22.90 0.15 -3.53 16 26 C -0.06 -0.99 8.62 22.66 0.20 -0.79 16 27 C 0.13 4.34 5.31 86.86 0.46 4.80 16 28 H 0.03 1.06 7.20 -2.39 -0.02 1.04 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.59 7.81 -2.39 -0.02 1.57 16 31 H 0.03 0.92 8.11 -2.39 -0.02 0.90 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.37 20.37 6.31 -92.71 -0.58 19.79 16 34 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.09 1.45 8.01 -2.39 -0.02 1.43 16 36 H 0.12 1.34 8.05 -2.39 -0.02 1.33 16 37 H 0.11 1.17 6.81 -2.39 -0.02 1.16 16 38 H 0.10 1.22 6.66 -2.39 -0.02 1.20 16 39 H 0.14 3.40 7.66 -2.91 -0.02 3.38 16 40 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.25 0.12 8.06 -2.91 -0.02 0.10 16 42 H 0.19 2.37 2.75 -8.03 -0.02 2.35 16 43 H 0.04 1.83 7.82 -2.39 -0.02 1.81 16 44 H 0.06 2.13 8.03 -2.39 -0.02 2.11 16 Total: -1.00 -79.85 369.51 1.38 -78.48 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.45 Total: 24.49 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 6.57 Total: 2.45 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -6.29 Total: -130.31 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.07 Total: -24.13 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.31 Total: 0.26 kcal Total: -79.85 1.38 -78.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699854039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.939 kcal (2) G-P(sol) polarization free energy of solvation -79.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds