Wall clock time and date at job start Wed Apr 1 2020 02:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00318 * 2 1 4 4 H 1.48497 * 109.46923 * 89.99853 * 3 2 1 5 5 H 1.48502 * 109.47174 * 210.00153 * 3 2 1 6 6 H 1.48502 * 109.46781 * 329.99900 * 3 2 1 7 7 C 1.38808 * 119.99365 * 180.27502 * 2 1 3 8 8 H 1.08002 * 120.00434 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99978 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00453 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47421 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47386 * 180.02562 * 11 10 9 13 13 H 1.09002 * 110.88136 * 305.70075 * 12 11 10 14 14 C 1.55155 * 111.00490 * 181.82461 * 12 11 10 15 15 C 1.54374 * 102.91999 * 206.45246 * 14 12 11 16 16 N 1.47021 * 107.28575 * 22.13568 * 15 14 12 17 17 C 1.34780 * 125.64637 * 181.05996 * 16 15 14 18 18 O 1.21610 * 120.00246 * 174.74238 * 17 16 15 19 19 C 1.47365 * 119.99998 * 354.74197 * 17 16 15 20 20 C 1.38773 * 120.55148 * 315.72055 * 19 17 16 21 21 N 1.31899 * 121.12132 * 179.97438 * 20 19 17 22 22 C 1.31666 * 122.21837 * 0.02562 * 21 20 19 23 23 C 1.39292 * 121.14390 * 359.97438 * 22 21 20 24 24 S 1.75872 * 131.39533 * 180.02562 * 23 22 21 25 25 C 1.75549 * 91.52462 * 180.02562 * 24 23 22 26 26 C 1.32485 * 110.79298 * 359.97438 * 25 24 23 27 27 C 1.40006 * 115.78008 * 359.75197 * 26 25 24 28 28 C 1.47425 * 108.70545 * 1.09283 * 16 15 14 29 29 H 0.97002 * 119.99140 * 359.72605 * 1 2 3 30 30 H 0.97000 * 119.99381 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47451 * 300.00778 * 10 9 7 32 32 H 1.09005 * 109.46729 * 60.00448 * 10 9 7 33 33 H 1.08999 * 109.47364 * 300.00735 * 11 10 9 34 34 H 1.08998 * 109.47072 * 60.00105 * 11 10 9 35 35 H 1.09004 * 110.71811 * 324.78307 * 14 12 11 36 36 H 1.08999 * 110.72098 * 88.05853 * 14 12 11 37 37 H 1.09007 * 109.84379 * 262.72878 * 15 14 12 38 38 H 1.08995 * 110.03331 * 141.65056 * 15 14 12 39 39 H 1.07997 * 119.43957 * 359.96175 * 20 19 17 40 40 H 1.07999 * 119.43032 * 179.97438 * 22 21 20 41 41 H 1.08003 * 124.60713 * 180.02562 * 25 24 23 42 42 H 1.07999 * 122.10883 * 179.97438 * 26 25 24 43 43 H 1.09003 * 110.36781 * 217.03196 * 28 16 15 44 44 H 1.09000 * 110.45795 * 94.75725 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5479 1.4401 -0.7001 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0107 9 7 3.3796 -1.2023 -0.0063 10 6 4.1120 -2.4710 -0.0118 11 6 5.6162 -2.1916 -0.0106 12 6 6.3812 -3.5166 -0.0170 13 1 6.0608 -4.1542 0.8070 14 6 7.9130 -3.2747 0.0301 15 6 8.4830 -4.5373 -0.6510 16 7 7.4134 -5.1041 -1.4854 17 6 7.5072 -6.2249 -2.2282 18 8 6.5275 -6.6550 -2.8062 19 6 8.7968 -6.9291 -2.3399 20 6 9.9708 -6.2212 -2.5554 21 7 11.1312 -6.8400 -2.6566 22 6 11.2396 -8.1486 -2.5605 23 6 10.1212 -8.9503 -2.3444 24 16 9.9546 -10.6928 -2.1746 25 6 8.2182 -10.5528 -1.9573 26 6 7.8379 -9.2850 -2.0141 27 6 8.8602 -8.3513 -2.2223 28 6 6.2217 -4.2432 -1.3757 29 1 -0.4849 0.8401 0.0040 30 1 3.8646 -0.3623 -0.0023 31 1 3.8490 -3.0463 0.8758 32 1 3.8483 -3.0388 -0.9042 33 1 5.8796 -1.6160 -0.8980 34 1 5.8796 -1.6239 0.8818 35 1 8.1796 -2.3798 -0.5323 36 1 8.2604 -3.2015 1.0607 37 1 8.7860 -5.2611 0.1057 38 1 9.3377 -4.2723 -1.2733 39 1 9.9336 -5.1453 -2.6419 40 1 12.2126 -8.6086 -2.6508 41 1 7.5507 -11.3868 -1.7981 42 1 6.8049 -8.9900 -1.9031 43 1 5.3151 -4.8482 -1.3783 44 1 6.1972 -3.5208 -2.1916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700082688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:00 Heat of formation + Delta-G solvation = 42.049651 kcal Electronic energy + Delta-G solvation = -26637.578249 eV Core-core repulsion = 22874.786133 eV Total energy + Delta-G solvation = -3762.792115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.32624 -39.83486 -37.91691 -36.77468 -35.36846 -33.31643 -32.05069 -31.12936 -30.81346 -29.85485 -27.56338 -25.48171 -25.01739 -23.83668 -22.90478 -21.46953 -21.24678 -20.55408 -20.16114 -18.40228 -17.94159 -17.55838 -16.95222 -16.64230 -16.22735 -15.44168 -15.11754 -14.89532 -14.70317 -14.60742 -14.51566 -14.08298 -13.94747 -13.48584 -13.33669 -13.08997 -12.88391 -12.74529 -12.63538 -12.42661 -12.35761 -11.89008 -11.71061 -11.49151 -11.29217 -10.92959 -10.77800 -10.68969 -10.56460 -10.42524 -10.34719 -10.09877 -9.92756 -9.58210 -9.56987 -8.91004 -8.88649 -8.38566 -7.22553 -5.75811 -3.11527 -0.18360 0.27725 0.88050 1.31628 1.81877 2.34443 2.62739 3.22676 3.37371 3.39554 3.45315 3.79453 3.93821 4.05064 4.21122 4.32576 4.41708 4.53975 4.59588 4.68166 4.77021 4.85444 4.94390 5.00651 5.17460 5.26787 5.33722 5.36756 5.49295 5.56990 5.59373 5.65628 5.68451 5.73035 5.77611 5.85250 5.92034 5.95000 6.08117 6.10243 6.24784 6.72097 6.75226 7.17539 7.28518 7.80323 8.00845 8.43239 9.22380 9.94579 10.14178 11.42656 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.001975 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.349766 B =14170.483520 C =14946.158117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.155 3.845 11 C -0.119 4.119 12 C -0.094 4.094 13 H 0.088 0.912 14 C -0.128 4.128 15 C 0.095 3.905 16 N -0.611 5.611 17 C 0.578 3.422 18 O -0.523 6.523 19 C -0.137 4.137 20 C 0.121 3.879 21 N -0.472 5.472 22 C 0.176 3.824 23 C -0.214 4.214 24 S 0.127 5.873 25 C -0.167 4.167 26 C -0.126 4.126 27 C 0.011 3.989 28 C 0.109 3.891 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.177 0.823 42 H 0.156 0.844 43 H 0.086 0.914 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.033 -20.428 -2.468 34.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.194 4.194 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.028 3.972 11 C -0.157 4.157 12 C -0.114 4.114 13 H 0.106 0.894 14 C -0.166 4.166 15 C -0.028 4.028 16 N -0.345 5.345 17 C 0.365 3.635 18 O -0.400 6.400 19 C -0.144 4.144 20 C -0.032 4.032 21 N -0.180 5.180 22 C 0.008 3.992 23 C -0.332 4.332 24 S 0.389 5.611 25 C -0.303 4.303 26 C -0.155 4.155 27 C -0.006 4.006 28 C -0.012 4.012 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.185 0.815 40 H 0.184 0.816 41 H 0.195 0.805 42 H 0.174 0.826 43 H 0.104 0.896 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 28.943 -21.516 -3.000 36.189 hybrid contribution -1.239 1.886 0.165 2.262 sum 27.704 -19.630 -2.835 34.072 Atomic orbital electron populations 1.69713 1.05103 1.25794 1.57642 1.24701 0.95285 0.97273 1.02118 0.86513 0.79179 0.84908 0.77717 1.21103 1.20345 1.21734 1.19076 0.80675 0.94760 1.42876 0.89239 1.42715 1.04092 1.02278 1.91221 1.20662 0.88516 0.89348 0.98711 1.21736 0.96297 0.95159 1.02510 1.22335 0.94364 0.97663 0.97007 0.89393 1.22742 0.95568 0.96751 1.01496 1.22265 0.90485 0.96072 0.93994 1.48431 1.15680 1.24621 1.45786 1.17503 0.87547 0.79376 0.79075 1.90847 1.37659 1.65424 1.46046 1.20742 0.95205 0.92420 1.06023 1.22850 0.86100 1.00531 0.93729 1.67773 1.26894 1.09735 1.13635 1.22389 0.96758 0.88461 0.91593 1.23845 0.98356 0.99515 1.11487 1.84229 1.03020 0.99351 1.74476 1.25577 0.98495 1.00913 1.05283 1.20024 1.01150 0.91379 1.02943 1.18207 0.92264 0.92694 0.97422 1.22475 0.88121 0.92910 0.97740 0.93078 0.80714 0.95560 0.95464 0.91556 0.91229 0.90021 0.89672 0.91301 0.91080 0.81520 0.81644 0.80525 0.82626 0.89587 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.68 13.97 55.49 0.78 -28.91 16 2 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 3 Si 0.89 22.15 27.74 -169.99 -4.71 17.44 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.24 -7.01 10.47 -15.06 -0.16 -7.16 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 9 N -0.76 -18.02 5.41 -59.91 -0.32 -18.34 16 10 C 0.15 2.89 6.14 -4.05 -0.02 2.87 16 11 C -0.12 -1.61 4.84 -26.73 -0.13 -1.74 16 12 C -0.09 -1.01 3.04 -88.48 -0.27 -1.28 16 13 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 14 C -0.13 -1.01 6.42 -24.87 -0.16 -1.17 16 15 C 0.09 0.75 5.91 -3.04 -0.02 0.74 16 16 N -0.61 -6.77 3.33 -171.78 -0.57 -7.34 16 17 C 0.58 7.41 7.26 -12.54 -0.09 7.32 16 18 O -0.52 -8.55 16.25 5.27 0.09 -8.46 16 19 C -0.14 -1.49 5.45 -104.21 -0.57 -2.06 16 20 C 0.12 1.12 9.56 -17.32 -0.17 0.95 16 21 N -0.47 -4.36 10.32 -12.87 -0.13 -4.49 16 22 C 0.18 1.37 11.20 -17.23 -0.19 1.18 16 23 C -0.21 -1.84 6.52 -38.48 -0.25 -2.09 16 24 S 0.13 0.81 23.29 -107.50 -2.50 -1.69 16 25 C -0.17 -1.17 11.10 28.82 0.32 -0.85 16 26 C -0.13 -1.21 9.55 -40.84 -0.39 -1.60 16 27 C 0.01 0.11 5.85 -106.74 -0.62 -0.51 16 28 C 0.11 1.32 5.73 -2.53 -0.01 1.30 16 29 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 30 H 0.36 8.26 5.53 -40.82 -0.23 8.04 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.03 0.53 7.59 -51.93 -0.39 0.13 16 33 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.45 5.72 -51.93 -0.30 0.16 16 39 H 0.17 1.24 6.08 -52.49 -0.32 0.92 16 40 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.18 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.16 1.63 7.38 -52.49 -0.39 1.25 16 43 H 0.09 1.19 7.95 -51.93 -0.41 0.78 16 44 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -35.29 373.06 -10.43 -45.72 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.83 Total: 4.60 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.83 Total: -4.15 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.25 Total: -59.08 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.50 Total: -1.69 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.29 -10.43 -45.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700082688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.774 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds