Wall clock time and date at job start Wed Apr 1 2020 02:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00318 * 2 1 4 4 H 1.48497 * 109.46923 * 89.99853 * 3 2 1 5 5 H 1.48502 * 109.47174 * 210.00153 * 3 2 1 6 6 H 1.48502 * 109.46781 * 329.99900 * 3 2 1 7 7 C 1.38808 * 119.99365 * 180.27502 * 2 1 3 8 8 H 1.08002 * 120.00434 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99978 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00453 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47421 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47386 * 180.02562 * 11 10 9 13 13 H 1.09002 * 110.88136 * 305.70075 * 12 11 10 14 14 C 1.55155 * 111.00490 * 181.82461 * 12 11 10 15 15 C 1.54374 * 102.91999 * 206.45246 * 14 12 11 16 16 N 1.47021 * 107.28575 * 22.13568 * 15 14 12 17 17 C 1.34780 * 125.64637 * 181.05996 * 16 15 14 18 18 O 1.21610 * 120.00246 * 174.74238 * 17 16 15 19 19 C 1.47365 * 119.99998 * 354.74197 * 17 16 15 20 20 C 1.38773 * 120.55148 * 315.72055 * 19 17 16 21 21 N 1.31899 * 121.12132 * 179.97438 * 20 19 17 22 22 C 1.31666 * 122.21837 * 0.02562 * 21 20 19 23 23 C 1.39292 * 121.14390 * 359.97438 * 22 21 20 24 24 S 1.75872 * 131.39533 * 180.02562 * 23 22 21 25 25 C 1.75549 * 91.52462 * 180.02562 * 24 23 22 26 26 C 1.32485 * 110.79298 * 359.97438 * 25 24 23 27 27 C 1.40006 * 115.78008 * 359.75197 * 26 25 24 28 28 C 1.47425 * 108.70545 * 1.09283 * 16 15 14 29 29 H 0.97002 * 119.99140 * 359.72605 * 1 2 3 30 30 H 0.97000 * 119.99381 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47451 * 300.00778 * 10 9 7 32 32 H 1.09005 * 109.46729 * 60.00448 * 10 9 7 33 33 H 1.08999 * 109.47364 * 300.00735 * 11 10 9 34 34 H 1.08998 * 109.47072 * 60.00105 * 11 10 9 35 35 H 1.09004 * 110.71811 * 324.78307 * 14 12 11 36 36 H 1.08999 * 110.72098 * 88.05853 * 14 12 11 37 37 H 1.09007 * 109.84379 * 262.72878 * 15 14 12 38 38 H 1.08995 * 110.03331 * 141.65056 * 15 14 12 39 39 H 1.07997 * 119.43957 * 359.96175 * 20 19 17 40 40 H 1.07999 * 119.43032 * 179.97438 * 22 21 20 41 41 H 1.08003 * 124.60713 * 180.02562 * 25 24 23 42 42 H 1.07999 * 122.10883 * 179.97438 * 26 25 24 43 43 H 1.09003 * 110.36781 * 217.03196 * 28 16 15 44 44 H 1.09000 * 110.45795 * 94.75725 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5479 1.4401 -0.7001 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0107 9 7 3.3796 -1.2023 -0.0063 10 6 4.1120 -2.4710 -0.0118 11 6 5.6162 -2.1916 -0.0106 12 6 6.3812 -3.5166 -0.0170 13 1 6.0608 -4.1542 0.8070 14 6 7.9130 -3.2747 0.0301 15 6 8.4830 -4.5373 -0.6510 16 7 7.4134 -5.1041 -1.4854 17 6 7.5072 -6.2249 -2.2282 18 8 6.5275 -6.6550 -2.8062 19 6 8.7968 -6.9291 -2.3399 20 6 9.9708 -6.2212 -2.5554 21 7 11.1312 -6.8400 -2.6566 22 6 11.2396 -8.1486 -2.5605 23 6 10.1212 -8.9503 -2.3444 24 16 9.9546 -10.6928 -2.1746 25 6 8.2182 -10.5528 -1.9573 26 6 7.8379 -9.2850 -2.0141 27 6 8.8602 -8.3513 -2.2223 28 6 6.2217 -4.2432 -1.3757 29 1 -0.4849 0.8401 0.0040 30 1 3.8646 -0.3623 -0.0023 31 1 3.8490 -3.0463 0.8758 32 1 3.8483 -3.0388 -0.9042 33 1 5.8796 -1.6160 -0.8980 34 1 5.8796 -1.6239 0.8818 35 1 8.1796 -2.3798 -0.5323 36 1 8.2604 -3.2015 1.0607 37 1 8.7860 -5.2611 0.1057 38 1 9.3377 -4.2723 -1.2733 39 1 9.9336 -5.1453 -2.6419 40 1 12.2126 -8.6086 -2.6508 41 1 7.5507 -11.3868 -1.7981 42 1 6.8049 -8.9900 -1.9031 43 1 5.3151 -4.8482 -1.3783 44 1 6.1972 -3.5208 -2.1916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700082688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:59 Heat of formation + Delta-G solvation = 18.443651 kcal Electronic energy + Delta-G solvation = -26638.601882 eV Core-core repulsion = 22874.786133 eV Total energy + Delta-G solvation = -3763.815748 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.06377 -40.65303 -38.90874 -37.44999 -36.98474 -34.69724 -33.39383 -32.42748 -31.45633 -30.91016 -28.79852 -26.50782 -25.72586 -25.02632 -24.10223 -22.78365 -22.10867 -21.42291 -21.08042 -19.64510 -19.12073 -18.67556 -17.64127 -17.38053 -17.15928 -16.62083 -16.17096 -16.06669 -15.75620 -15.59051 -15.41740 -15.20213 -15.00444 -14.80388 -14.47047 -14.19999 -13.97685 -13.74963 -13.55427 -13.37044 -13.19300 -13.09988 -13.01715 -12.87010 -12.33581 -12.11926 -12.09688 -11.90816 -11.81765 -11.56425 -11.49909 -11.46924 -11.05503 -10.97036 -10.73049 -10.19791 -9.80703 -9.31469 -8.95495 -8.04152 -5.38713 -0.85403 -0.36901 0.32026 0.71150 1.13979 1.37562 1.42972 1.46000 1.50412 1.77641 2.48421 2.53123 3.10866 3.26781 3.31905 3.37768 3.50457 3.57406 3.62050 3.69996 3.91984 3.98801 4.11859 4.22656 4.25625 4.30031 4.42198 4.46516 4.52725 4.57790 4.68083 4.72681 4.80791 4.88252 4.93547 4.95818 5.04424 5.10891 5.13625 5.24306 5.28688 5.34832 5.44695 5.73668 6.19904 6.30195 6.63661 6.87529 7.06906 7.82376 8.03296 9.17559 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.001975 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.349766 B =14170.483520 C =14946.158117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.070 4.070 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.247 1.247 6 H -0.296 1.296 7 C -0.241 4.241 8 H 0.049 0.951 9 N -0.759 5.759 10 C 0.149 3.851 11 C -0.104 4.104 12 C -0.086 4.086 13 H 0.086 0.914 14 C -0.115 4.115 15 C 0.091 3.909 16 N -0.609 5.609 17 C 0.575 3.425 18 O -0.575 6.575 19 C -0.161 4.161 20 C 0.129 3.871 21 N -0.486 5.486 22 C 0.185 3.815 23 C -0.233 4.233 24 S 0.187 5.813 25 C -0.154 4.154 26 C -0.161 4.161 27 C -0.008 4.008 28 C 0.106 3.894 29 H 0.259 0.741 30 H 0.369 0.631 31 H 0.020 0.980 32 H 0.015 0.985 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.183 0.817 40 H 0.201 0.799 41 H 0.204 0.796 42 H 0.134 0.866 43 H 0.055 0.945 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.709 -20.335 -1.920 38.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.261 4.261 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.171 1.171 6 H -0.223 1.223 7 C -0.372 4.372 8 H 0.067 0.933 9 N -0.405 5.405 10 C 0.023 3.977 11 C -0.142 4.142 12 C -0.106 4.106 13 H 0.104 0.896 14 C -0.153 4.153 15 C -0.030 4.030 16 N -0.341 5.341 17 C 0.364 3.636 18 O -0.455 6.455 19 C -0.168 4.168 20 C -0.023 4.023 21 N -0.195 5.195 22 C 0.018 3.982 23 C -0.350 4.350 24 S 0.451 5.549 25 C -0.290 4.290 26 C -0.191 4.191 27 C -0.025 4.025 28 C -0.016 4.016 29 H 0.067 0.933 30 H 0.202 0.798 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.199 0.801 40 H 0.217 0.783 41 H 0.221 0.779 42 H 0.151 0.849 43 H 0.074 0.926 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 33.702 -21.437 -2.429 40.015 hybrid contribution -2.715 1.606 -0.008 3.154 sum 30.987 -19.831 -2.438 36.870 Atomic orbital electron populations 1.69918 1.07356 1.26849 1.59511 1.25662 0.96296 1.01806 1.02369 0.85278 0.78675 0.78699 0.78334 1.19974 1.17078 1.22308 1.19044 0.83018 0.93372 1.41754 0.93262 1.42707 1.02394 1.04405 1.90996 1.20860 0.91925 0.87224 0.97702 1.21596 0.92189 0.96788 1.03595 1.22206 0.96645 0.95961 0.95782 0.89575 1.22751 0.92368 0.97022 1.03144 1.22508 0.90116 0.96233 0.94136 1.48495 1.16117 1.24010 1.45479 1.17904 0.87840 0.79455 0.78424 1.90804 1.39536 1.66852 1.48303 1.20616 0.94553 0.92843 1.08819 1.23028 0.85573 1.01156 0.92566 1.67866 1.26488 1.10528 1.14603 1.22983 0.97842 0.88083 0.89282 1.24112 0.97820 1.01171 1.11925 1.84016 1.01236 0.96936 1.72740 1.25988 1.00018 1.00657 1.02337 1.19964 1.00377 0.92638 1.06123 1.18426 0.93373 0.92850 0.97822 1.22397 0.87731 0.92706 0.98770 0.93282 0.79778 0.96167 0.96696 0.90789 0.89665 0.88689 0.87378 0.90460 0.88845 0.80066 0.78262 0.77937 0.84868 0.92648 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.64 13.97 21.65 0.30 -64.34 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.96 45.49 27.74 68.60 1.90 47.40 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16 6 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 7 C -0.24 -14.22 10.47 84.03 0.88 -13.34 16 8 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 9 N -0.76 -35.86 5.41 -343.47 -1.86 -37.71 16 10 C 0.15 5.60 6.14 86.38 0.53 6.13 16 11 C -0.10 -2.60 4.84 30.59 0.15 -2.45 16 12 C -0.09 -1.74 3.04 -9.40 -0.03 -1.77 16 13 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 14 C -0.12 -1.44 6.42 31.80 0.20 -1.23 16 15 C 0.09 1.26 5.91 86.75 0.51 1.77 16 16 N -0.61 -13.57 3.33 -815.64 -2.71 -16.28 16 17 C 0.57 15.57 7.26 86.65 0.63 16.20 16 18 O -0.57 -20.55 16.25 -4.06 -0.07 -20.61 16 19 C -0.16 -3.56 5.45 -19.60 -0.11 -3.66 16 20 C 0.13 2.24 9.56 84.81 0.81 3.05 16 21 N -0.49 -7.96 10.32 -194.65 -2.01 -9.97 16 22 C 0.19 2.43 11.20 84.97 0.95 3.38 16 23 C -0.23 -3.61 6.52 22.98 0.15 -3.46 16 24 S 0.19 1.92 23.29 -56.49 -1.32 0.61 16 25 C -0.15 -1.99 11.10 66.69 0.74 -1.25 16 26 C -0.16 -3.25 9.55 21.57 0.21 -3.05 16 27 C -0.01 -0.17 5.85 -21.24 -0.12 -0.29 16 28 C 0.11 2.64 5.73 86.85 0.50 3.14 16 29 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 30 H 0.37 16.09 5.53 -92.71 -0.51 15.58 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.01 0.60 7.59 -2.38 -0.02 0.58 16 33 H 0.07 1.79 8.03 -2.39 -0.02 1.77 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.09 1.01 8.04 -2.38 -0.02 0.99 16 36 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.09 0.91 5.72 -2.39 -0.01 0.90 16 39 H 0.18 2.37 6.08 -2.91 -0.02 2.35 16 40 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.13 3.20 7.38 -2.91 -0.02 3.18 16 43 H 0.05 1.69 7.95 -2.39 -0.02 1.67 16 44 H 0.07 1.84 7.95 -2.39 -0.02 1.82 16 Total: -1.00 -81.50 373.06 1.18 -80.32 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.46 Total: 21.18 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 6.47 Total: -0.59 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -6.28 Total: -128.31 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.07 Total: -20.61 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.40 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.32 Total: 0.61 kcal Total: -81.50 1.18 -80.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700082688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.762 kcal (2) G-P(sol) polarization free energy of solvation -81.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds