Wall clock time and date at job start Wed Apr 1 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99871 * 2 1 4 4 H 1.48500 * 109.47251 * 269.99961 * 3 2 1 5 5 H 1.48504 * 109.47184 * 30.00383 * 3 2 1 6 6 H 1.48505 * 109.47059 * 150.00227 * 3 2 1 7 7 C 1.38807 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00628 * 359.97438 * 7 2 1 9 9 N 1.36945 * 119.99909 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99923 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46929 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.52433 * 305.07664 * 11 10 9 13 13 C 1.53037 * 109.49803 * 184.99741 * 11 10 9 14 14 C 1.53041 * 109.53991 * 178.68087 * 13 11 10 15 15 C 1.53185 * 109.31259 * 61.36687 * 14 13 11 16 16 N 1.46930 * 108.89322 * 305.29461 * 15 14 13 17 17 C 1.34780 * 120.63112 * 233.68281 * 16 15 14 18 18 O 1.21596 * 119.99631 * 356.20227 * 17 16 15 19 19 C 1.47559 * 120.00091 * 176.20382 * 17 16 15 20 20 C 1.40115 * 120.58754 * 50.16196 * 19 17 16 21 21 N 1.30617 * 121.16812 * 179.72821 * 20 19 17 22 22 C 1.34907 * 122.44859 * 0.53179 * 21 20 19 23 23 C 1.40617 * 128.45808 * 179.72092 * 22 21 20 24 24 C 1.32283 * 115.90932 * 180.02562 * 23 22 21 25 25 S 1.75505 * 110.83583 * 0.02562 * 24 23 22 26 26 C 1.40095 * 119.27227 * 359.76216 * 22 21 20 27 27 C 1.39371 * 119.75156 * 359.97249 * 26 22 21 28 28 C 1.47208 * 118.55482 * 53.53792 * 16 15 14 29 29 H 0.97000 * 120.00166 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99952 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47611 * 59.99631 * 10 9 7 32 32 H 1.09009 * 109.46945 * 299.99585 * 10 9 7 33 33 H 1.09003 * 109.45850 * 58.65820 * 13 11 10 34 34 H 1.09003 * 109.44674 * 298.69589 * 13 11 10 35 35 H 1.08997 * 109.49888 * 301.41052 * 14 13 11 36 36 H 1.09004 * 109.52600 * 181.33123 * 14 13 11 37 37 H 1.09000 * 109.59172 * 65.14995 * 15 14 13 38 38 H 1.09002 * 109.58961 * 185.43435 * 15 14 13 39 39 H 1.07994 * 119.41631 * 359.97438 * 20 19 17 40 40 H 1.08000 * 122.04553 * 0.02562 * 23 22 21 41 41 H 1.07995 * 124.58312 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.73397 * 180.02562 * 27 26 22 43 43 H 1.09000 * 109.52970 * 186.67833 * 28 16 15 44 44 H 1.09003 * 109.67646 * 66.37073 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 6 5.6164 -2.1912 -0.0020 12 1 5.8666 -1.5434 -0.8421 13 6 6.3812 -3.5107 -0.1288 14 6 7.8852 -3.2294 -0.1617 15 6 8.3028 -2.5525 1.1475 16 7 7.4725 -1.3575 1.3511 17 6 8.0413 -0.1551 1.5686 18 8 9.2498 -0.0630 1.6665 19 6 7.1974 1.0495 1.6879 20 6 6.0943 1.0646 2.5517 21 7 5.3429 2.1264 2.6700 22 6 5.5715 3.2567 1.9700 23 6 4.8473 4.4618 1.9938 24 6 5.2936 5.4202 1.1987 25 16 6.7119 4.8867 0.3132 26 6 6.6555 3.3062 1.0838 27 6 7.4806 2.1925 0.9376 28 6 6.0082 -1.5025 1.3091 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 -0.0014 31 1 3.8485 -3.0419 -0.8924 32 1 3.8492 -3.0430 0.8876 33 1 6.0858 -4.0146 -1.0491 34 1 6.1496 -4.1479 0.7247 35 1 8.1141 -2.5719 -1.0004 36 1 8.4288 -4.1673 -0.2758 37 1 8.1588 -3.2433 1.9782 38 1 9.3522 -2.2631 1.0907 39 1 5.8636 0.1841 3.1328 40 1 3.9797 4.5966 2.6227 41 1 4.8453 6.3983 1.1063 42 1 8.3208 2.2134 0.2593 43 1 5.5430 -0.5180 1.3579 44 1 5.6749 -2.1065 2.1530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713237276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:37 Heat of formation + Delta-G solvation = 42.154542 kcal Electronic energy + Delta-G solvation = -28547.770763 eV Core-core repulsion = 24784.983196 eV Total energy + Delta-G solvation = -3762.787567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.06376 -39.75203 -37.83601 -35.87737 -35.00627 -33.12395 -32.69143 -32.06557 -30.44255 -29.79014 -26.13366 -25.89950 -24.62218 -24.08148 -22.82217 -21.73481 -21.12991 -20.55809 -19.56218 -18.33731 -17.59393 -17.07892 -17.04829 -16.22455 -16.07221 -15.27706 -14.86292 -14.75606 -14.56726 -14.41977 -14.21319 -13.89644 -13.70341 -13.45030 -13.16668 -12.95740 -12.82382 -12.76445 -12.68391 -12.48071 -11.92278 -11.69355 -11.45067 -11.31864 -11.18443 -10.98174 -10.81432 -10.67318 -10.59010 -10.32215 -10.19369 -10.07014 -9.59337 -9.49476 -8.93610 -8.88136 -8.71147 -8.19335 -7.26202 -5.78104 -3.14422 0.08553 0.90055 1.16912 1.63184 1.81129 2.53627 2.83987 3.38174 3.42318 3.46331 3.58876 3.92610 4.22416 4.44133 4.56131 4.59161 4.65458 4.81852 4.83031 4.90538 4.96688 5.02503 5.17981 5.22177 5.30817 5.48099 5.50759 5.53445 5.60423 5.62110 5.70241 5.72777 5.78011 5.86473 5.91080 5.93056 5.95640 6.12667 6.23821 6.25363 6.38545 6.58582 6.67843 7.19340 7.67867 7.94001 7.96492 8.40128 9.18538 9.91277 10.09621 11.39850 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.007517 B = 0.006317 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3724.111212 B = 4431.685500 C = 7505.850105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.008 3.992 3 Si 0.880 3.120 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.164 3.836 11 C -0.111 4.111 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.112 3.888 16 N -0.601 5.601 17 C 0.573 3.427 18 O -0.538 6.538 19 C -0.173 4.173 20 C 0.160 3.840 21 N -0.444 5.444 22 C 0.148 3.852 23 C -0.116 4.116 24 C -0.167 4.167 25 S 0.115 5.885 26 C -0.207 4.207 27 C 0.018 3.982 28 C 0.102 3.898 29 H 0.259 0.741 30 H 0.359 0.641 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.169 0.831 40 H 0.157 0.843 41 H 0.179 0.821 42 H 0.146 0.854 43 H 0.093 0.907 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.578 3.153 2.346 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.188 4.188 3 Si 0.710 3.290 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.401 5.401 10 C 0.036 3.964 11 C -0.131 4.131 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.171 4.171 15 C -0.010 4.010 16 N -0.333 5.333 17 C 0.360 3.640 18 O -0.415 6.415 19 C -0.182 4.182 20 C -0.013 4.013 21 N -0.152 5.152 22 C 0.014 3.986 23 C -0.146 4.146 24 C -0.304 4.304 25 S 0.378 5.622 26 C -0.324 4.324 27 C -0.012 4.012 28 C -0.020 4.020 29 H 0.069 0.931 30 H 0.192 0.808 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.186 0.814 40 H 0.174 0.826 41 H 0.197 0.803 42 H 0.163 0.837 43 H 0.111 0.889 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.149 3.930 1.906 18.668 hybrid contribution 0.013 0.592 0.333 0.679 sum 18.162 4.522 2.239 18.850 Atomic orbital electron populations 1.69698 1.05116 1.25789 1.57455 1.24644 0.95183 0.97123 1.01857 0.86596 0.79902 0.85159 0.77349 1.21712 1.21742 1.19450 1.19018 0.80533 0.94681 1.43225 0.89180 1.42731 1.04116 1.02017 1.91265 1.20640 0.87136 0.89482 0.99131 1.21748 0.97097 0.97038 0.97228 0.90805 1.21521 0.93834 0.96917 1.02751 1.21916 0.96951 1.00754 0.97506 1.21648 0.96001 0.85817 0.97571 1.48169 1.07942 1.07301 1.69919 1.17889 0.87092 0.82578 0.76465 1.90786 1.13976 1.85914 1.50872 1.20768 0.99429 0.95490 1.02483 1.22897 0.88110 0.95947 0.94309 1.67613 1.27362 0.98298 1.21880 1.19228 0.92481 0.93642 0.93266 1.19746 1.02046 0.90718 1.02132 1.25398 1.00299 1.03927 1.00729 1.84166 1.28729 1.03963 1.45321 1.23474 1.02867 1.00563 1.05524 1.20742 0.96190 0.88733 0.95581 1.22268 0.77879 1.03031 0.98860 0.93109 0.80842 0.94982 0.95162 0.91175 0.91379 0.91580 0.90556 0.91106 0.89066 0.81370 0.82580 0.80333 0.83671 0.88891 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.32 27.73 -169.99 -4.71 17.60 16 4 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.36 6.52 56.52 0.37 -5.99 16 7 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.76 -17.20 5.18 -59.91 -0.31 -17.52 16 10 C 0.16 2.91 5.65 -4.04 -0.02 2.89 16 11 C -0.11 -1.55 2.37 -90.50 -0.21 -1.77 16 12 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.11 -1.20 5.17 -26.69 -0.14 -1.34 16 14 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 15 C 0.11 1.17 6.41 -3.71 -0.02 1.15 16 16 N -0.60 -7.67 2.98 -173.76 -0.52 -8.19 16 17 C 0.57 8.33 7.26 -12.46 -0.09 8.24 16 18 O -0.54 -8.97 16.48 5.28 0.09 -8.89 16 19 C -0.17 -2.55 5.03 -104.87 -0.53 -3.07 16 20 C 0.16 2.43 8.53 -17.36 -0.15 2.29 16 21 N -0.44 -7.60 10.39 -11.01 -0.11 -7.72 16 22 C 0.15 2.37 6.97 -84.92 -0.59 1.78 16 23 C -0.12 -1.60 10.16 -40.61 -0.41 -2.01 16 24 C -0.17 -1.84 11.08 28.81 0.32 -1.52 16 25 S 0.12 1.32 23.29 -107.50 -2.50 -1.18 16 26 C -0.21 -3.00 6.49 -38.46 -0.25 -3.25 16 27 C 0.02 0.25 9.90 -38.64 -0.38 -0.13 16 28 C 0.10 1.37 4.47 -3.56 -0.02 1.36 16 29 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 30 H 0.36 8.10 4.77 -40.82 -0.19 7.91 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.02 7.02 -51.93 -0.36 0.65 16 39 H 0.17 2.23 7.03 -52.49 -0.37 1.86 16 40 H 0.16 1.97 8.06 -52.49 -0.42 1.54 16 41 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.09 1.45 3.77 -51.93 -0.20 1.25 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -34.33 368.71 -10.44 -44.77 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.79 Total: 7.72 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.91 Total: -3.64 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -0.17 Total: -61.95 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.50 Total: -1.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.33 -10.44 -44.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713237276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.928 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds