Wall clock time and date at job start Wed Apr 1 2020 02:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99871 * 2 1 4 4 H 1.48500 * 109.47251 * 269.99961 * 3 2 1 5 5 H 1.48504 * 109.47184 * 30.00383 * 3 2 1 6 6 H 1.48505 * 109.47059 * 150.00227 * 3 2 1 7 7 C 1.38807 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00628 * 359.97438 * 7 2 1 9 9 N 1.36945 * 119.99909 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99923 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46929 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.52433 * 305.07664 * 11 10 9 13 13 C 1.53037 * 109.49803 * 184.99741 * 11 10 9 14 14 C 1.53041 * 109.53991 * 178.68087 * 13 11 10 15 15 C 1.53185 * 109.31259 * 61.36687 * 14 13 11 16 16 N 1.46930 * 108.89322 * 305.29461 * 15 14 13 17 17 C 1.34780 * 120.63112 * 233.68281 * 16 15 14 18 18 O 1.21596 * 119.99631 * 356.20227 * 17 16 15 19 19 C 1.47559 * 120.00091 * 176.20382 * 17 16 15 20 20 C 1.40115 * 120.58754 * 50.16196 * 19 17 16 21 21 N 1.30617 * 121.16812 * 179.72821 * 20 19 17 22 22 C 1.34907 * 122.44859 * 0.53179 * 21 20 19 23 23 C 1.40617 * 128.45808 * 179.72092 * 22 21 20 24 24 C 1.32283 * 115.90932 * 180.02562 * 23 22 21 25 25 S 1.75505 * 110.83583 * 0.02562 * 24 23 22 26 26 C 1.40095 * 119.27227 * 359.76216 * 22 21 20 27 27 C 1.39371 * 119.75156 * 359.97249 * 26 22 21 28 28 C 1.47208 * 118.55482 * 53.53792 * 16 15 14 29 29 H 0.97000 * 120.00166 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99952 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47611 * 59.99631 * 10 9 7 32 32 H 1.09009 * 109.46945 * 299.99585 * 10 9 7 33 33 H 1.09003 * 109.45850 * 58.65820 * 13 11 10 34 34 H 1.09003 * 109.44674 * 298.69589 * 13 11 10 35 35 H 1.08997 * 109.49888 * 301.41052 * 14 13 11 36 36 H 1.09004 * 109.52600 * 181.33123 * 14 13 11 37 37 H 1.09000 * 109.59172 * 65.14995 * 15 14 13 38 38 H 1.09002 * 109.58961 * 185.43435 * 15 14 13 39 39 H 1.07994 * 119.41631 * 359.97438 * 20 19 17 40 40 H 1.08000 * 122.04553 * 0.02562 * 23 22 21 41 41 H 1.07995 * 124.58312 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.73397 * 180.02562 * 27 26 22 43 43 H 1.09000 * 109.52970 * 186.67833 * 28 16 15 44 44 H 1.09003 * 109.67646 * 66.37073 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 6 5.6164 -2.1912 -0.0020 12 1 5.8666 -1.5434 -0.8421 13 6 6.3812 -3.5107 -0.1288 14 6 7.8852 -3.2294 -0.1617 15 6 8.3028 -2.5525 1.1475 16 7 7.4725 -1.3575 1.3511 17 6 8.0413 -0.1551 1.5686 18 8 9.2498 -0.0630 1.6665 19 6 7.1974 1.0495 1.6879 20 6 6.0943 1.0646 2.5517 21 7 5.3429 2.1264 2.6700 22 6 5.5715 3.2567 1.9700 23 6 4.8473 4.4618 1.9938 24 6 5.2936 5.4202 1.1987 25 16 6.7119 4.8867 0.3132 26 6 6.6555 3.3062 1.0838 27 6 7.4806 2.1925 0.9376 28 6 6.0082 -1.5025 1.3091 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 -0.0014 31 1 3.8485 -3.0419 -0.8924 32 1 3.8492 -3.0430 0.8876 33 1 6.0858 -4.0146 -1.0491 34 1 6.1496 -4.1479 0.7247 35 1 8.1141 -2.5719 -1.0004 36 1 8.4288 -4.1673 -0.2758 37 1 8.1588 -3.2433 1.9782 38 1 9.3522 -2.2631 1.0907 39 1 5.8636 0.1841 3.1328 40 1 3.9797 4.5966 2.6227 41 1 4.8453 6.3983 1.1063 42 1 8.3208 2.2134 0.2593 43 1 5.5430 -0.5180 1.3579 44 1 5.6749 -2.1065 2.1530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713237276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:36 Heat of formation + Delta-G solvation = 20.005270 kcal Electronic energy + Delta-G solvation = -28548.731227 eV Core-core repulsion = 24784.983196 eV Total energy + Delta-G solvation = -3763.748031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.13478 -40.80469 -38.99422 -36.88910 -36.63889 -34.39377 -33.87561 -33.50888 -32.00788 -30.87719 -27.44447 -27.14625 -25.64506 -25.20786 -24.35967 -22.83308 -22.35886 -21.74811 -20.57201 -19.70074 -19.23243 -18.16544 -18.12891 -17.27441 -17.09107 -16.67199 -16.33218 -15.97615 -15.81320 -15.56647 -15.40044 -15.12824 -14.97958 -14.57655 -14.43284 -14.21091 -14.04292 -13.87772 -13.81187 -13.73205 -13.38501 -13.09549 -12.88547 -12.71297 -12.26895 -12.24112 -12.00943 -11.92028 -11.84274 -11.73358 -11.57417 -11.42767 -11.25964 -11.00502 -10.61189 -9.93468 -9.73421 -9.29250 -9.13515 -8.04341 -5.36128 -0.95240 -0.18501 0.21568 0.68923 0.80901 1.31881 1.37859 1.42310 1.45025 1.80642 2.44656 2.48536 2.91159 3.16191 3.28615 3.41689 3.49543 3.53572 3.79935 3.86030 3.90186 3.96662 4.00829 4.08454 4.26623 4.30408 4.42923 4.51484 4.55093 4.61179 4.72334 4.76890 4.82237 4.89598 4.92672 4.93208 4.96964 5.07561 5.18809 5.21066 5.30792 5.44391 5.48073 5.76227 6.12020 6.19730 6.58295 6.85966 7.06964 7.84078 8.00151 9.16921 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.007517 B = 0.006317 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3724.111212 B = 4431.685500 C = 7505.850105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.058 4.058 3 Si 0.946 3.054 4 H -0.291 1.291 5 H -0.299 1.299 6 H -0.249 1.249 7 C -0.225 4.225 8 H 0.063 0.937 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.101 4.101 12 H 0.062 0.938 13 C -0.107 4.107 14 C -0.124 4.124 15 C 0.106 3.894 16 N -0.594 5.594 17 C 0.575 3.425 18 O -0.563 6.563 19 C -0.185 4.185 20 C 0.155 3.845 21 N -0.479 5.479 22 C 0.124 3.876 23 C -0.153 4.153 24 C -0.145 4.145 25 S 0.160 5.840 26 C -0.230 4.230 27 C 0.016 3.984 28 C 0.105 3.895 29 H 0.256 0.744 30 H 0.361 0.639 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.179 0.821 40 H 0.159 0.841 41 H 0.218 0.782 42 H 0.161 0.839 43 H 0.073 0.927 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.861 3.344 1.835 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.249 4.249 3 Si 0.775 3.225 4 H -0.219 1.219 5 H -0.226 1.226 6 H -0.174 1.174 7 C -0.356 4.356 8 H 0.081 0.919 9 N -0.403 5.403 10 C 0.034 3.966 11 C -0.121 4.121 12 H 0.081 0.919 13 C -0.145 4.145 14 C -0.162 4.162 15 C -0.015 4.015 16 N -0.324 5.324 17 C 0.363 3.637 18 O -0.443 6.443 19 C -0.193 4.193 20 C -0.017 4.017 21 N -0.187 5.187 22 C -0.009 4.009 23 C -0.183 4.183 24 C -0.281 4.281 25 S 0.423 5.577 26 C -0.347 4.347 27 C -0.014 4.014 28 C -0.017 4.017 29 H 0.065 0.935 30 H 0.194 0.806 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.196 0.804 40 H 0.177 0.823 41 H 0.235 0.765 42 H 0.178 0.822 43 H 0.091 0.909 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 20.486 4.074 1.386 20.933 hybrid contribution -0.691 0.484 0.453 0.958 sum 19.795 4.558 1.840 20.396 Atomic orbital electron populations 1.69858 1.06897 1.26351 1.60115 1.25346 0.95913 1.00595 1.03089 0.85531 0.79267 0.80707 0.77038 1.21854 1.22630 1.17383 1.19037 0.82722 0.93396 1.40429 0.91924 1.42769 1.02479 1.04123 1.90928 1.20836 0.89333 0.87287 0.99125 1.21619 0.94537 0.98893 0.97012 0.91941 1.21508 0.94165 0.94992 1.03803 1.21872 0.96105 1.01800 0.96399 1.21889 0.95351 0.85190 0.99023 1.48177 1.07749 1.07549 1.68956 1.17853 0.86643 0.82960 0.76245 1.90769 1.14867 1.86268 1.52415 1.20812 0.99557 0.95997 1.02944 1.23082 0.88170 0.95977 0.94479 1.67583 1.28637 0.99270 1.23239 1.19671 0.93488 0.94064 0.93710 1.19916 1.03186 0.90965 1.04240 1.25932 0.99169 1.04663 0.98331 1.84020 1.28225 1.01466 1.43975 1.23761 1.02705 1.02245 1.06022 1.20997 0.96376 0.88570 0.95444 1.22171 0.78246 1.02152 0.99136 0.93533 0.80572 0.95085 0.94498 0.90501 0.89926 0.92512 0.87628 0.89036 0.89550 0.80411 0.82324 0.76504 0.82170 0.90874 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.23 13.97 21.65 0.30 -62.92 16 2 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 3 Si 0.95 47.12 27.73 68.60 1.90 49.02 16 4 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 5 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 6 H -0.25 -11.46 6.52 99.48 0.65 -10.81 16 7 C -0.22 -12.62 10.47 84.03 0.88 -11.74 16 8 H 0.06 3.82 8.06 -2.91 -0.02 3.79 16 9 N -0.76 -34.05 5.18 -343.44 -1.78 -35.82 16 10 C 0.16 5.49 5.65 86.38 0.49 5.98 16 11 C -0.10 -2.60 2.37 -10.72 -0.03 -2.63 16 12 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 13 C -0.11 -1.94 5.17 30.62 0.16 -1.78 16 14 C -0.12 -1.92 6.08 30.67 0.19 -1.73 16 15 C 0.11 1.94 6.41 86.36 0.55 2.49 16 16 N -0.59 -14.04 2.98 -821.90 -2.45 -16.49 16 17 C 0.58 16.16 7.26 86.70 0.63 16.79 16 18 O -0.56 -18.29 16.48 -4.02 -0.07 -18.36 16 19 C -0.18 -5.33 5.03 -20.03 -0.10 -5.43 16 20 C 0.16 4.72 8.53 85.33 0.73 5.44 16 21 N -0.48 -16.45 10.39 -188.74 -1.96 -18.41 16 22 C 0.12 3.93 6.97 39.70 0.28 4.20 16 23 C -0.15 -4.03 10.16 21.79 0.22 -3.80 16 24 C -0.14 -2.79 11.08 66.76 0.74 -2.05 16 25 S 0.16 3.25 23.29 -56.49 -1.32 1.93 16 26 C -0.23 -6.41 6.49 22.99 0.15 -6.26 16 27 C 0.02 0.44 9.90 22.88 0.23 0.66 16 28 C 0.11 2.66 4.47 86.31 0.39 3.05 16 29 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 30 H 0.36 15.99 4.77 -92.71 -0.44 15.55 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.72 7.02 -2.39 -0.02 1.71 16 39 H 0.18 4.71 7.03 -2.91 -0.02 4.69 16 40 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 41 H 0.22 2.32 8.06 -2.91 -0.02 2.30 16 42 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 43 H 0.07 2.20 3.77 -2.39 -0.01 2.19 16 44 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -76.01 368.71 1.13 -74.88 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.53 Total: 25.94 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.96 Total: 0.23 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -5.89 Total: -133.65 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.07 Total: -18.36 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.90 Total: 49.02 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.32 Total: 1.93 kcal Total: -76.01 1.13 -74.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713237276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.888 kcal (2) G-P(sol) polarization free energy of solvation -76.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds