Wall clock time and date at job start Wed Apr 1 2020 02:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99908 * 2 1 4 4 H 1.48499 * 109.47327 * 270.28067 * 3 2 1 5 5 H 1.48500 * 109.46963 * 30.27897 * 3 2 1 6 6 H 1.48497 * 109.47337 * 150.27598 * 3 2 1 7 7 C 1.38811 * 120.00163 * 180.27630 * 2 1 3 8 8 H 1.07996 * 119.99872 * 179.71984 * 7 2 1 9 9 N 1.36930 * 119.99956 * 359.72643 * 7 2 1 10 10 C 1.46508 * 120.00254 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47068 * 174.91332 * 10 9 7 12 12 N 1.46496 * 110.01659 * 54.33563 * 11 10 9 13 13 C 1.34779 * 120.00175 * 65.07849 * 12 11 10 14 14 O 1.21602 * 120.00281 * 354.92843 * 13 12 11 15 15 C 1.47365 * 119.99544 * 174.93196 * 13 12 11 16 16 C 1.38767 * 120.55966 * 359.71809 * 15 13 12 17 17 N 1.31896 * 121.11922 * 179.73024 * 16 15 13 18 18 C 1.31665 * 122.22583 * 0.58736 * 17 16 15 19 19 C 1.39291 * 121.13688 * 359.68459 * 18 17 16 20 20 S 1.75883 * 131.39848 * 180.02562 * 19 18 17 21 21 C 1.75549 * 91.52543 * 179.97438 * 20 19 18 22 22 C 1.32476 * 110.79535 * 0.02562 * 21 20 19 23 23 C 1.40015 * 115.77714 * 359.97438 * 22 21 20 24 24 C 1.54264 * 110.03497 * 292.93812 * 11 10 9 25 25 C 1.54961 * 104.15953 * 217.13979 * 24 11 10 26 26 C 1.54888 * 102.77749 * 37.89036 * 25 24 11 27 27 C 1.53877 * 110.02622 * 175.72179 * 11 10 9 28 28 H 0.96993 * 120.00038 * 359.71923 * 1 2 3 29 29 H 0.97000 * 120.00201 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.46907 * 294.91605 * 10 9 7 31 31 H 1.09001 * 109.46599 * 54.91010 * 10 9 7 32 32 H 0.97003 * 119.99718 * 245.07570 * 12 11 10 33 33 H 1.08003 * 119.43515 * 359.97438 * 16 15 13 34 34 H 1.07998 * 119.43284 * 179.69960 * 18 17 16 35 35 H 1.07993 * 124.60664 * 180.02562 * 21 20 19 36 36 H 1.08000 * 122.11554 * 180.02562 * 22 21 20 37 37 H 1.09003 * 110.48227 * 335.78734 * 24 11 10 38 38 H 1.09001 * 110.48467 * 98.42906 * 24 11 10 39 39 H 1.08991 * 110.72089 * 279.57011 * 25 24 11 40 40 H 1.09007 * 110.76111 * 156.22267 * 25 24 11 41 41 H 1.09004 * 110.48217 * 203.40445 * 26 25 24 42 42 H 1.08995 * 110.48947 * 80.76248 * 26 25 24 43 43 H 1.09003 * 110.03333 * 238.56782 * 27 11 10 44 44 H 1.08995 * 110.03605 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0499 -1.4000 5 1 1.4506 2.6510 0.7059 6 1 3.5507 1.4386 0.6942 7 6 2.0103 -1.2021 -0.0058 8 1 3.0903 -1.2020 -0.0104 9 7 1.3257 -2.3880 -0.0059 10 6 2.0582 -3.6568 -0.0125 11 6 1.0695 -4.8172 0.1167 12 7 0.0456 -4.7221 -0.9267 13 6 0.3900 -4.8548 -2.2229 14 8 1.5609 -4.9611 -2.5332 15 6 -0.6526 -4.8710 -3.2643 16 6 -1.9927 -4.7564 -2.9228 17 7 -2.9346 -4.7643 -3.8461 18 6 -2.6604 -4.8914 -5.1276 19 6 -1.3471 -5.0185 -5.5741 20 16 -0.6810 -5.2001 -7.1917 21 6 0.9566 -5.2579 -6.5617 22 6 0.9568 -5.1471 -5.2416 23 6 -0.3010 -5.0111 -4.6417 24 6 0.4078 -4.7950 1.5101 25 6 0.2713 -6.2914 1.8888 26 6 1.5798 -6.9061 1.3330 27 6 1.8141 -6.1590 0.0038 28 1 -0.4850 0.8400 0.0041 29 1 0.3557 -2.3880 -0.0015 30 1 2.6106 -3.7524 -0.9473 31 1 2.7553 -3.6782 0.8252 32 1 -0.8803 -4.5637 -0.6846 33 1 -2.2689 -4.6550 -1.8836 34 1 -3.4676 -4.8970 -5.8450 35 1 1.8434 -5.3687 -7.1679 36 1 1.8696 -5.1599 -4.6645 37 1 1.0451 -4.2768 2.2268 38 1 -0.5731 -4.3225 1.4591 39 1 -0.5993 -6.7337 1.4049 40 1 0.2166 -6.4127 2.9707 41 1 1.4534 -7.9738 1.1534 42 1 2.4066 -6.7294 2.0208 43 1 1.4130 -6.7399 -0.8267 44 1 2.8798 -5.9835 -0.1426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714140748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:09 Heat of formation + Delta-G solvation = 34.555543 kcal Electronic energy + Delta-G solvation = -28289.085532 eV Core-core repulsion = 24525.968448 eV Total energy + Delta-G solvation = -3763.117084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.91547 -39.67535 -37.44272 -36.37347 -34.29752 -33.38308 -31.76653 -30.72593 -30.40955 -28.64042 -27.97486 -24.80785 -24.60674 -24.23361 -22.19565 -21.25487 -21.08076 -20.57226 -19.01334 -18.39747 -17.32473 -17.05583 -16.44960 -16.13767 -15.77444 -15.10695 -14.83452 -14.52086 -14.44746 -14.21707 -14.08189 -13.99332 -13.63080 -13.18210 -12.97647 -12.84653 -12.65536 -12.32584 -12.09964 -11.89246 -11.60463 -11.19252 -11.07128 -10.96450 -10.90624 -10.81402 -10.70321 -10.49432 -10.42451 -10.11494 -10.02697 -9.94959 -9.66953 -9.34618 -9.17563 -8.79116 -8.62807 -7.99731 -6.83237 -5.72354 -2.98620 0.18293 0.66176 1.26118 1.69813 2.25448 2.98974 3.35007 3.46271 3.51610 3.52712 3.83949 4.18055 4.40040 4.59393 4.61113 4.66377 4.76871 4.83112 4.98324 5.04632 5.17618 5.25863 5.45905 5.53161 5.59570 5.65004 5.66752 5.78112 5.79087 5.88439 5.95833 6.01841 6.03188 6.19734 6.20971 6.28116 6.30715 6.39078 6.48972 6.52303 6.58666 6.90642 7.09894 7.67285 7.74690 7.79856 8.47156 8.49890 9.58674 10.16899 10.52589 11.50894 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008470 B = 0.004143 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.174608 B = 6756.745884 C = 8538.524647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.231 4.231 8 H 0.068 0.932 9 N -0.726 5.726 10 C 0.145 3.855 11 C 0.170 3.830 12 N -0.702 5.702 13 C 0.570 3.430 14 O -0.523 6.523 15 C -0.137 4.137 16 C 0.126 3.874 17 N -0.473 5.473 18 C 0.174 3.826 19 C -0.215 4.215 20 S 0.108 5.892 21 C -0.175 4.175 22 C -0.117 4.117 23 C 0.017 3.983 24 C -0.118 4.118 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.116 4.116 28 H 0.253 0.747 29 H 0.381 0.619 30 H 0.038 0.962 31 H 0.027 0.973 32 H 0.396 0.604 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.169 0.831 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 -16.973 -8.022 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.370 5.370 10 C 0.017 3.983 11 C 0.085 3.915 12 N -0.354 5.354 13 C 0.356 3.644 14 O -0.401 6.401 15 C -0.145 4.145 16 C -0.028 4.028 17 N -0.182 5.182 18 C 0.006 3.994 19 C -0.333 4.333 20 S 0.370 5.630 21 C -0.311 4.311 22 C -0.146 4.146 23 C 0.000 4.000 24 C -0.156 4.156 25 C -0.163 4.163 26 C -0.162 4.162 27 C -0.155 4.155 28 H 0.063 0.937 29 H 0.215 0.785 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.231 0.769 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.191 0.809 36 H 0.187 0.813 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.208 -16.936 -9.358 19.802 hybrid contribution 1.163 1.293 1.145 2.081 sum -3.045 -15.644 -8.213 17.929 Atomic orbital electron populations 1.69641 1.05013 1.25430 1.58396 1.24674 0.95494 0.97468 1.03403 0.86221 0.78674 0.84074 0.77456 1.21910 1.21850 1.20821 1.19223 0.90995 0.84222 1.41847 0.91387 1.42197 1.05627 0.99722 1.89457 1.21162 0.92996 0.85018 0.99099 1.21298 0.88378 0.95638 0.86226 1.45961 1.11413 1.72707 1.05272 1.17609 0.87851 0.76785 0.82164 1.90695 1.18509 1.49298 1.81563 1.20958 0.95251 1.05429 0.92822 1.22746 0.87457 0.93116 0.99436 1.67710 1.36422 1.13103 1.00959 1.22339 0.92491 0.91856 0.92669 1.23834 0.99014 1.11888 0.98522 1.84060 0.98650 1.76383 1.03940 1.25549 1.00570 1.06591 0.98357 1.20329 0.98978 1.01194 0.94103 1.18261 0.92728 0.96768 0.92228 1.22612 1.01546 0.96104 0.95303 1.22551 0.97624 0.95755 1.00373 1.22385 0.97822 0.99002 0.96997 1.22409 1.01165 0.94697 0.97256 0.93696 0.78516 0.94445 0.95549 0.76898 0.81921 0.81892 0.80873 0.81333 0.89481 0.90916 0.91794 0.91593 0.92056 0.91543 0.91516 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.30 13.06 55.49 0.72 -27.58 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.31 5.28 -59.91 -0.32 -18.63 16 10 C 0.15 3.04 4.63 -4.04 -0.02 3.02 16 11 C 0.17 2.73 0.57 -130.70 -0.07 2.66 16 12 N -0.70 -10.94 4.40 -47.65 -0.21 -11.15 16 13 C 0.57 9.76 6.81 -12.55 -0.09 9.67 16 14 O -0.52 -10.12 11.74 5.28 0.06 -10.06 16 15 C -0.14 -2.14 5.94 -104.20 -0.62 -2.76 16 16 C 0.13 1.75 10.67 -17.33 -0.18 1.56 16 17 N -0.47 -6.48 10.32 -12.88 -0.13 -6.61 16 18 C 0.17 2.10 11.20 -17.23 -0.19 1.91 16 19 C -0.22 -2.77 6.52 -38.48 -0.25 -3.02 16 20 S 0.11 1.10 23.29 -107.50 -2.50 -1.40 16 21 C -0.18 -1.92 11.10 28.82 0.32 -1.60 16 22 C -0.12 -1.64 9.43 -40.83 -0.39 -2.02 16 23 C 0.02 0.25 5.88 -106.74 -0.63 -0.38 16 24 C -0.12 -1.67 5.78 -25.03 -0.14 -1.82 16 25 C -0.13 -1.41 6.91 -24.70 -0.17 -1.58 16 26 C -0.12 -1.42 6.83 -25.07 -0.17 -1.60 16 27 C -0.12 -1.65 5.22 -25.61 -0.13 -1.78 16 28 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.38 9.87 7.18 -40.82 -0.29 9.58 16 30 H 0.04 0.87 6.57 -51.93 -0.34 0.53 16 31 H 0.03 0.56 8.02 -51.93 -0.42 0.14 16 32 H 0.40 5.36 6.28 -40.82 -0.26 5.10 16 33 H 0.16 1.88 6.39 -52.48 -0.34 1.54 16 34 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.17 2.57 6.28 -52.49 -0.33 2.24 16 37 H 0.09 1.36 7.77 -51.93 -0.40 0.96 16 38 H 0.07 1.03 7.70 -51.93 -0.40 0.63 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.98 7.00 -51.93 -0.36 0.61 16 44 H 0.07 1.10 7.67 -51.93 -0.40 0.71 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -33.55 367.65 -10.47 -44.01 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -5.62 Total: 12.98 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.99 Total: -5.01 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: 0.07 Total: -63.97 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.06 Total: -10.06 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.50 Total: -1.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.55 -10.47 -44.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714140748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.569 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds