Wall clock time and date at job start Wed Apr 1 2020 04:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46927 * 2 1 4 4 N 1.46499 * 109.47312 * 179.97438 * 3 2 1 5 5 C 1.36931 * 120.00113 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99924 * 0.02562 * 5 4 3 7 7 C 1.38818 * 120.00242 * 179.97438 * 5 4 3 8 8 N 1.31615 * 119.99576 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 119.99998 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47584 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47338 * 120.00232 * 9 7 5 12 12 H 1.48507 * 109.47006 * 239.99893 * 9 7 5 13 13 N 1.46500 * 109.47301 * 119.99846 * 2 1 3 14 14 C 1.34785 * 119.99832 * 304.32954 * 13 2 1 15 15 O 1.21588 * 119.99663 * 354.95886 * 14 13 2 16 16 C 1.47588 * 119.99815 * 174.95904 * 14 13 2 17 17 C 1.40189 * 120.12690 * 0.02562 * 16 14 13 18 18 C 1.35756 * 120.61939 * 180.25403 * 17 16 14 19 19 C 1.41250 * 120.62648 * 359.45303 * 18 17 16 20 20 N 1.34412 * 129.47810 * 180.27151 * 19 18 17 21 21 C 1.28055 * 117.91477 * 180.25457 * 20 19 18 22 22 S 1.70646 * 111.51718 * 359.97438 * 21 20 19 23 23 C 1.40148 * 118.74607 * 0.53323 * 19 18 17 24 24 C 1.38909 * 120.40897 * 359.74210 * 23 19 18 25 25 C 1.52997 * 109.47286 * 240.00292 * 2 1 3 26 26 C 1.52994 * 117.50261 * 12.86523 * 25 2 1 27 27 C 1.52999 * 117.49865 * 304.20266 * 25 2 1 28 28 H 1.08998 * 109.47536 * 299.99753 * 1 2 3 29 29 H 1.08995 * 109.47218 * 60.00522 * 1 2 3 30 30 H 1.09007 * 109.46873 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47157 * 300.00368 * 3 2 1 32 32 H 1.09001 * 109.47301 * 59.99689 * 3 2 1 33 33 H 0.97003 * 119.99840 * 359.97438 * 4 3 2 34 34 H 0.96995 * 120.00019 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00461 * 124.32499 * 13 2 1 36 36 H 1.08001 * 119.69522 * 359.97049 * 17 16 14 37 37 H 1.07993 * 119.68448 * 179.72163 * 18 17 16 38 38 H 1.08003 * 124.24034 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.07593 * 179.97438 * 24 23 19 40 40 H 1.08998 * 115.54840 * 158.54456 * 25 2 1 41 41 H 1.09007 * 117.49815 * 359.97438 * 26 25 2 42 42 H 1.08997 * 117.50114 * 145.02356 * 26 25 2 43 43 H 1.08995 * 117.50505 * 214.98107 * 27 25 2 44 44 H 1.09000 * 117.49666 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1895 2.6285 0.0002 6 1 3.6495 3.5638 -0.0002 7 6 5.5777 2.6287 0.0013 8 7 6.2358 1.4889 0.0023 9 14 6.5115 4.2464 0.0015 10 1 5.5465 5.3751 -0.0004 11 1 7.3643 4.3256 1.2146 12 1 7.3663 4.3247 -1.2104 13 7 2.0184 -0.6906 1.1962 14 6 1.6224 -0.2831 2.4184 15 8 0.9341 0.7126 2.5339 16 6 2.0242 -1.0456 3.6165 17 6 2.8181 -2.1936 3.4864 18 6 3.1892 -2.9054 4.5812 19 6 2.7923 -2.4967 5.8737 20 7 3.0585 -3.0566 7.0664 21 6 2.5765 -2.4967 8.1124 22 16 1.6693 -1.1066 7.7166 23 6 1.9987 -1.3489 6.0037 24 6 1.6168 -0.6272 4.8799 25 6 2.0400 -0.7212 -1.2492 26 6 1.0282 -1.0130 -2.3591 27 6 1.5563 -2.1534 -1.4851 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.9900 0.6026 0.0013 34 1 7.2057 1.4889 0.0027 35 1 2.6266 -1.4410 1.1086 36 1 3.1337 -2.5175 2.5056 37 1 3.7973 -3.7900 4.4631 38 1 2.7256 -2.8589 9.1189 39 1 1.0048 0.2563 4.9862 40 1 3.0596 -0.4787 -1.5487 41 1 -0.0010 -0.6916 -2.1992 42 1 1.3822 -0.9628 -3.3888 43 1 2.2573 -2.8529 -1.9402 44 1 0.8743 -2.5816 -0.7505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715122649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:43 Heat of formation + Delta-G solvation = 72.091077 kcal Electronic energy + Delta-G solvation = -27773.956370 eV Core-core repulsion = 24012.466949 eV Total energy + Delta-G solvation = -3761.489421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.79299 -39.93993 -38.02353 -36.55745 -34.67838 -33.55165 -31.57194 -31.28368 -30.25048 -29.24882 -25.97284 -25.55547 -23.96790 -23.05582 -22.44903 -22.15809 -22.06058 -20.34292 -18.89732 -18.80577 -17.52606 -17.15724 -16.53575 -16.04427 -15.63182 -15.19564 -15.08421 -14.75399 -14.42936 -14.36921 -14.11003 -13.82728 -13.73249 -13.24244 -13.02691 -12.70241 -12.61380 -12.36674 -12.09012 -12.04092 -11.83275 -11.37107 -11.09072 -11.06611 -10.84137 -10.80823 -10.73584 -10.39185 -10.20496 -10.04680 -9.93244 -9.83838 -9.65819 -9.46128 -8.95358 -8.78129 -8.61922 -8.31165 -6.82545 -5.72375 -2.98221 -0.01804 0.97941 1.00157 1.46462 1.87362 3.04038 3.25974 3.46236 3.52563 3.54434 3.72829 3.78586 4.07145 4.40727 4.63878 4.70848 4.77286 4.82145 4.97630 5.03545 5.08236 5.17559 5.27586 5.36793 5.45220 5.61718 5.63573 5.66614 5.77101 5.87994 5.95699 5.97953 6.04270 6.08472 6.21243 6.24983 6.27729 6.37710 6.44341 6.55208 6.68562 6.90426 7.10296 7.30177 7.76796 7.83934 8.47346 8.50362 9.58962 10.16811 10.52579 11.50984 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.003544 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.201991 B = 7898.422649 C = 9700.947284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.203 3.797 3 C 0.144 3.856 4 N -0.726 5.726 5 C -0.229 4.229 6 H 0.069 0.931 7 C -0.016 4.016 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 N -0.700 5.700 14 C 0.566 3.434 15 O -0.528 6.528 16 C -0.104 4.104 17 C -0.073 4.073 18 C -0.068 4.068 19 C 0.094 3.906 20 N -0.467 5.467 21 C 0.065 3.935 22 S 0.108 5.892 23 C -0.190 4.190 24 C -0.009 4.009 25 C -0.151 4.151 26 C -0.172 4.172 27 C -0.183 4.183 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.024 0.976 32 H 0.045 0.955 33 H 0.381 0.619 34 H 0.252 0.748 35 H 0.398 0.602 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.205 0.795 39 H 0.146 0.854 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.964 -12.700 9.590 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.117 3.883 3 C 0.016 3.984 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.586 5.586 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.351 5.351 14 C 0.353 3.647 15 O -0.406 6.406 16 C -0.112 4.112 17 C -0.095 4.095 18 C -0.089 4.089 19 C -0.027 4.027 20 N -0.179 5.179 21 C -0.239 4.239 22 S 0.362 5.638 23 C -0.309 4.309 24 C -0.032 4.032 25 C -0.169 4.169 26 C -0.209 4.209 27 C -0.220 4.220 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.215 0.785 34 H 0.062 0.938 35 H 0.233 0.767 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.221 0.779 39 H 0.163 0.837 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.657 -11.597 10.402 20.072 hybrid contribution 1.642 -0.095 -0.726 1.798 sum -11.015 -11.692 9.676 18.752 Atomic orbital electron populations 1.22290 0.94576 1.01709 1.03729 1.20061 0.93157 0.93184 0.81873 1.21071 0.86476 0.91595 0.99267 1.42235 0.99179 1.06182 1.89422 1.19282 0.89017 0.86239 1.41529 0.91300 1.24665 0.96294 0.96665 1.03476 1.69646 1.06558 1.23735 1.58620 0.86150 0.79931 0.83307 0.77073 1.20613 1.22030 1.21998 1.45814 1.48860 1.35391 1.05031 1.17808 0.80199 0.83968 0.82772 1.90725 1.38864 1.24831 1.86175 1.20014 1.00617 0.96830 0.93692 1.20876 0.95717 0.93609 0.99278 1.20267 0.99879 1.00583 0.88197 1.19378 0.98154 0.92455 0.92680 1.66189 1.22517 1.31659 0.97561 1.28187 0.97750 0.96033 1.01953 1.84052 1.52929 1.29136 0.97684 1.23727 1.07052 1.02046 0.98079 1.20412 0.96394 0.97755 0.88593 1.22569 1.00828 0.97021 0.96515 1.23057 0.99279 1.02688 0.95864 1.22962 1.04025 0.91518 1.03544 0.90113 0.91442 0.92894 0.95791 0.93708 0.78464 0.93776 0.76674 0.84168 0.84154 0.77880 0.83659 0.85910 0.88245 0.88861 0.88897 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 6.98 37.16 0.26 -2.07 16 2 C 0.20 3.26 0.54 -131.82 -0.07 3.18 16 3 C 0.14 3.03 5.03 -4.04 -0.02 3.01 16 4 N -0.73 -18.21 5.04 -59.91 -0.30 -18.51 16 5 C -0.23 -6.52 9.99 -15.06 -0.15 -6.67 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 8 N -0.94 -28.08 13.06 55.49 0.72 -27.36 16 9 Si 0.90 22.90 29.55 -169.99 -5.02 17.88 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 13 N -0.70 -10.73 4.67 -48.62 -0.23 -10.96 16 14 C 0.57 9.44 7.17 -12.44 -0.09 9.35 16 15 O -0.53 -10.27 12.57 5.29 0.07 -10.20 16 16 C -0.10 -1.51 5.87 -105.00 -0.62 -2.13 16 17 C -0.07 -0.89 9.44 -39.74 -0.38 -1.27 16 18 C -0.07 -0.82 10.03 -39.33 -0.39 -1.21 16 19 C 0.09 1.24 7.00 -84.88 -0.59 0.65 16 20 N -0.47 -5.74 10.56 -12.83 -0.14 -5.88 16 21 C 0.06 0.59 12.11 51.19 0.62 1.21 16 22 S 0.11 1.05 23.17 -107.50 -2.49 -1.44 16 23 C -0.19 -2.47 6.54 -38.62 -0.25 -2.72 16 24 C -0.01 -0.12 9.62 -38.98 -0.37 -0.49 16 25 C -0.15 -2.21 4.84 -90.62 -0.44 -2.65 16 26 C -0.17 -2.07 9.64 -26.70 -0.26 -2.33 16 27 C -0.18 -2.09 9.83 -26.69 -0.26 -2.35 16 28 H 0.08 1.29 6.03 -51.93 -0.31 0.98 16 29 H 0.07 0.88 6.78 -51.93 -0.35 0.53 16 30 H 0.05 0.65 6.98 -51.92 -0.36 0.29 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 1.05 6.32 -51.93 -0.33 0.72 16 33 H 0.38 9.76 6.62 -40.82 -0.27 9.49 16 34 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.40 5.32 6.51 -40.82 -0.27 5.05 16 36 H 0.14 1.38 6.39 -52.49 -0.34 1.05 16 37 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.20 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.15 2.01 7.64 -52.49 -0.40 1.61 16 40 H 0.12 2.18 7.09 -51.93 -0.37 1.81 16 41 H 0.10 1.11 5.88 -51.93 -0.31 0.81 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.09 0.97 7.34 -51.93 -0.38 0.59 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -33.99 370.31 -10.26 -44.25 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.34 Total: 13.67 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.11 Total: -7.03 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: 0.06 Total: -62.71 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.44 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.99 -10.26 -44.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715122649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.342 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds