Wall clock time and date at job start Wed Apr 1 2020 04:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46927 * 2 1 4 4 N 1.46499 * 109.47312 * 179.97438 * 3 2 1 5 5 C 1.36931 * 120.00113 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99924 * 0.02562 * 5 4 3 7 7 C 1.38818 * 120.00242 * 179.97438 * 5 4 3 8 8 N 1.31615 * 119.99576 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 119.99998 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47584 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47338 * 120.00232 * 9 7 5 12 12 H 1.48507 * 109.47006 * 239.99893 * 9 7 5 13 13 N 1.46500 * 109.47301 * 119.99846 * 2 1 3 14 14 C 1.34785 * 119.99832 * 304.32954 * 13 2 1 15 15 O 1.21588 * 119.99663 * 354.95886 * 14 13 2 16 16 C 1.47588 * 119.99815 * 174.95904 * 14 13 2 17 17 C 1.40189 * 120.12690 * 0.02562 * 16 14 13 18 18 C 1.35756 * 120.61939 * 180.25403 * 17 16 14 19 19 C 1.41250 * 120.62648 * 359.45303 * 18 17 16 20 20 N 1.34412 * 129.47810 * 180.27151 * 19 18 17 21 21 C 1.28055 * 117.91477 * 180.25457 * 20 19 18 22 22 S 1.70646 * 111.51718 * 359.97438 * 21 20 19 23 23 C 1.40148 * 118.74607 * 0.53323 * 19 18 17 24 24 C 1.38909 * 120.40897 * 359.74210 * 23 19 18 25 25 C 1.52997 * 109.47286 * 240.00292 * 2 1 3 26 26 C 1.52994 * 117.50261 * 12.86523 * 25 2 1 27 27 C 1.52999 * 117.49865 * 304.20266 * 25 2 1 28 28 H 1.08998 * 109.47536 * 299.99753 * 1 2 3 29 29 H 1.08995 * 109.47218 * 60.00522 * 1 2 3 30 30 H 1.09007 * 109.46873 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47157 * 300.00368 * 3 2 1 32 32 H 1.09001 * 109.47301 * 59.99689 * 3 2 1 33 33 H 0.97003 * 119.99840 * 359.97438 * 4 3 2 34 34 H 0.96995 * 120.00019 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00461 * 124.32499 * 13 2 1 36 36 H 1.08001 * 119.69522 * 359.97049 * 17 16 14 37 37 H 1.07993 * 119.68448 * 179.72163 * 18 17 16 38 38 H 1.08003 * 124.24034 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.07593 * 179.97438 * 24 23 19 40 40 H 1.08998 * 115.54840 * 158.54456 * 25 2 1 41 41 H 1.09007 * 117.49815 * 359.97438 * 26 25 2 42 42 H 1.08997 * 117.50114 * 145.02356 * 26 25 2 43 43 H 1.08995 * 117.50505 * 214.98107 * 27 25 2 44 44 H 1.09000 * 117.49666 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1895 2.6285 0.0002 6 1 3.6495 3.5638 -0.0002 7 6 5.5777 2.6287 0.0013 8 7 6.2358 1.4889 0.0023 9 14 6.5115 4.2464 0.0015 10 1 5.5465 5.3751 -0.0004 11 1 7.3643 4.3256 1.2146 12 1 7.3663 4.3247 -1.2104 13 7 2.0184 -0.6906 1.1962 14 6 1.6224 -0.2831 2.4184 15 8 0.9341 0.7126 2.5339 16 6 2.0242 -1.0456 3.6165 17 6 2.8181 -2.1936 3.4864 18 6 3.1892 -2.9054 4.5812 19 6 2.7923 -2.4967 5.8737 20 7 3.0585 -3.0566 7.0664 21 6 2.5765 -2.4967 8.1124 22 16 1.6693 -1.1066 7.7166 23 6 1.9987 -1.3489 6.0037 24 6 1.6168 -0.6272 4.8799 25 6 2.0400 -0.7212 -1.2492 26 6 1.0282 -1.0130 -2.3591 27 6 1.5563 -2.1534 -1.4851 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.9900 0.6026 0.0013 34 1 7.2057 1.4889 0.0027 35 1 2.6266 -1.4410 1.1086 36 1 3.1337 -2.5175 2.5056 37 1 3.7973 -3.7900 4.4631 38 1 2.7256 -2.8589 9.1189 39 1 1.0048 0.2563 4.9862 40 1 3.0596 -0.4787 -1.5487 41 1 -0.0010 -0.6916 -2.1992 42 1 1.3822 -0.9628 -3.3888 43 1 2.2573 -2.8529 -1.9402 44 1 0.8743 -2.5816 -0.7505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715122649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:42 Heat of formation + Delta-G solvation = 49.861142 kcal Electronic energy + Delta-G solvation = -27774.920332 eV Core-core repulsion = 24012.466949 eV Total energy + Delta-G solvation = -3762.453384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86361 -41.05744 -39.17517 -37.57622 -36.36202 -35.08626 -33.21171 -32.28361 -31.75528 -30.42063 -27.59928 -26.58499 -25.32073 -24.34206 -23.92332 -23.24359 -23.06022 -21.43610 -20.20143 -19.80081 -19.24168 -18.57924 -17.49392 -17.09050 -16.81131 -16.67654 -16.25251 -16.09127 -15.87087 -15.59244 -15.29182 -15.05598 -14.97037 -14.66585 -14.31889 -13.95571 -13.82757 -13.68801 -13.52534 -13.22206 -13.09459 -12.88816 -12.81381 -12.42797 -12.21357 -12.04804 -12.01555 -11.95464 -11.75683 -11.29115 -11.25079 -11.07531 -10.93118 -10.77016 -10.65895 -10.06396 -9.80641 -9.21269 -8.93959 -7.95504 -5.20987 -0.94540 0.01584 0.15865 0.64182 0.92162 1.43551 1.44345 1.54188 1.93010 2.08973 2.54654 2.69117 2.94817 3.03952 3.37443 3.48113 3.58343 3.68061 3.91439 3.95824 3.96477 4.07832 4.11182 4.19149 4.26477 4.38525 4.47748 4.62862 4.68384 4.80876 4.87398 4.89547 4.94483 4.99326 5.01925 5.05008 5.09999 5.15029 5.30760 5.35429 5.44995 5.46295 5.49413 5.66153 6.27504 6.45735 6.60924 7.24865 7.35060 8.09968 8.38370 9.27678 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.003544 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.201991 B = 7898.422649 C = 9700.947284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.211 3.789 3 C 0.145 3.855 4 N -0.729 5.729 5 C -0.242 4.242 6 H 0.063 0.937 7 C -0.068 4.068 8 N -0.962 5.962 9 Si 0.965 3.035 10 H -0.273 1.273 11 H -0.294 1.294 12 H -0.289 1.289 13 N -0.694 5.694 14 C 0.561 3.439 15 O -0.565 6.565 16 C -0.127 4.127 17 C -0.069 4.069 18 C -0.073 4.073 19 C 0.087 3.913 20 N -0.497 5.497 21 C 0.083 3.917 22 S 0.142 5.858 23 C -0.218 4.218 24 C -0.016 4.016 25 C -0.176 4.176 26 C -0.163 4.163 27 C -0.155 4.155 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.020 0.980 32 H 0.018 0.982 33 H 0.378 0.622 34 H 0.251 0.749 35 H 0.407 0.593 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.249 0.751 39 H 0.136 0.864 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.336 -14.390 10.329 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.126 3.874 3 C 0.018 3.982 4 N -0.372 5.372 5 C -0.374 4.374 6 H 0.081 0.919 7 C -0.260 4.260 8 N -0.613 5.613 9 Si 0.795 3.205 10 H -0.198 1.198 11 H -0.222 1.222 12 H -0.216 1.216 13 N -0.344 5.344 14 C 0.349 3.651 15 O -0.446 6.446 16 C -0.134 4.134 17 C -0.091 4.091 18 C -0.093 4.093 19 C -0.035 4.035 20 N -0.210 5.210 21 C -0.220 4.220 22 S 0.397 5.603 23 C -0.337 4.337 24 C -0.039 4.039 25 C -0.195 4.195 26 C -0.200 4.200 27 C -0.192 4.192 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.211 0.789 34 H 0.060 0.940 35 H 0.244 0.756 36 H 0.178 0.822 37 H 0.180 0.820 38 H 0.265 0.735 39 H 0.154 0.846 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.052 -13.296 11.133 21.704 hybrid contribution 1.721 0.444 -0.817 1.956 sum -11.331 -12.852 10.316 20.000 Atomic orbital electron populations 1.22211 0.92727 1.03179 1.03252 1.19875 0.94315 0.90277 0.82968 1.21109 0.84289 0.95322 0.97509 1.42293 1.00747 1.05064 1.89080 1.19576 0.89669 0.87204 1.40994 0.91902 1.25384 0.97033 0.99771 1.03857 1.69775 1.06497 1.25404 1.59628 0.85188 0.78535 0.79975 0.76792 1.19776 1.22174 1.21556 1.45791 1.48729 1.35326 1.04603 1.18219 0.79566 0.83647 0.83656 1.90699 1.40623 1.26507 1.86757 1.19927 1.02537 0.98048 0.92887 1.21038 0.94911 0.92654 1.00474 1.20545 0.99852 1.01156 0.87795 1.19730 0.97739 0.92369 0.93640 1.66278 1.24277 1.32662 0.97760 1.29016 0.95212 0.94772 1.03041 1.83960 1.52346 1.29032 0.94984 1.23951 1.07732 1.02381 0.99644 1.20398 0.96557 0.97735 0.89245 1.22244 0.99871 1.00334 0.97062 1.23189 0.99039 1.02306 0.95474 1.23053 1.03384 0.89902 1.02831 0.92252 0.90260 0.90335 0.96219 0.96436 0.78914 0.94046 0.75554 0.82179 0.81997 0.73515 0.84639 0.89399 0.86958 0.88286 0.87628 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 6.98 71.98 0.50 -3.80 16 2 C 0.21 6.86 0.54 3.60 0.00 6.86 16 3 C 0.15 6.38 5.03 86.38 0.43 6.81 16 4 N -0.73 -37.90 5.04 -343.45 -1.73 -39.63 16 5 C -0.24 -14.16 9.99 84.04 0.84 -13.32 16 6 H 0.06 3.67 7.83 -2.91 -0.02 3.64 16 7 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 8 N -0.96 -58.63 13.06 21.65 0.28 -58.34 16 9 Si 0.97 47.67 29.55 68.60 2.03 49.70 16 10 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 12 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 13 N -0.69 -21.58 4.67 -425.98 -1.99 -23.57 16 14 C 0.56 19.45 7.17 86.71 0.62 20.08 16 15 O -0.57 -23.27 12.57 -3.99 -0.05 -23.32 16 16 C -0.13 -3.79 5.87 -20.11 -0.12 -3.91 16 17 C -0.07 -1.67 9.44 22.17 0.21 -1.46 16 18 C -0.07 -1.68 10.03 22.43 0.23 -1.45 16 19 C 0.09 2.21 7.00 39.95 0.28 2.49 16 20 N -0.50 -11.26 10.56 -194.44 -2.05 -13.32 16 21 C 0.08 1.28 12.11 130.79 1.58 2.87 16 22 S 0.14 2.53 23.17 -56.49 -1.31 1.22 16 23 C -0.22 -5.62 6.54 22.89 0.15 -5.47 16 24 C -0.02 -0.48 9.62 22.66 0.22 -0.26 16 25 C -0.18 -5.07 4.84 -10.80 -0.05 -5.12 16 26 C -0.16 -3.59 9.64 30.62 0.30 -3.29 16 27 C -0.15 -3.12 9.83 30.62 0.30 -2.82 16 28 H 0.06 1.93 6.03 -2.39 -0.01 1.92 16 29 H 0.08 1.97 6.78 -2.39 -0.02 1.96 16 30 H 0.08 1.76 6.98 -2.38 -0.02 1.75 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.02 0.88 6.32 -2.39 -0.02 0.86 16 33 H 0.38 20.03 6.62 -92.71 -0.61 19.41 16 34 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.41 10.83 6.51 -92.71 -0.60 10.22 16 36 H 0.16 3.01 6.39 -2.91 -0.02 2.99 16 37 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 38 H 0.25 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.14 4.06 7.64 -2.91 -0.02 4.03 16 40 H 0.09 3.20 7.09 -2.39 -0.02 3.18 16 41 H 0.11 2.19 5.88 -2.38 -0.01 2.18 16 42 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.11 1.87 7.34 -2.39 -0.02 1.86 16 Total: -1.00 -75.90 370.31 0.99 -74.91 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -0.15 Total: 37.65 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.96 Total: -5.31 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -5.49 Total: -134.86 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.31 Total: 1.22 kcal Total: -75.90 0.99 -74.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715122649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.774 kcal (2) G-P(sol) polarization free energy of solvation -75.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds