Wall clock time and date at job start Wed Apr 1 2020 03:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28054 * 124.23572 * 2 1 4 4 C 1.34416 * 117.91492 * 180.02562 * 3 2 1 5 5 C 1.41242 * 129.48542 * 180.02562 * 4 3 2 6 6 C 1.35744 * 120.63701 * 179.97438 * 5 4 3 7 7 C 1.40195 * 120.61579 * 0.02562 * 6 5 4 8 8 C 1.47596 * 120.12658 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00148 * 156.32284 * 8 7 6 10 10 N 1.34782 * 119.99603 * 336.31159 * 8 7 6 11 11 C 1.47419 * 125.65184 * 3.33477 * 10 8 7 12 12 C 1.54909 * 104.83543 * 204.17017 * 11 10 8 13 13 C 1.55157 * 101.57753 * 322.99230 * 12 11 10 14 14 C 1.47024 * 125.64559 * 183.38379 * 10 8 7 15 15 H 1.09003 * 110.00834 * 59.40930 * 14 10 8 16 16 C 1.53000 * 109.88006 * 298.31645 * 14 10 8 17 17 N 1.46502 * 109.47332 * 75.00191 * 16 14 10 18 18 C 1.36933 * 120.00134 * 187.28914 * 17 16 14 19 19 H 1.08001 * 119.99932 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00107 * 179.97438 * 18 17 16 21 21 N 1.31613 * 119.99981 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99837 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46992 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47241 * 299.99853 * 22 20 18 25 25 H 1.48505 * 109.47187 * 60.00077 * 22 20 18 26 26 C 1.39182 * 119.74958 * 0.29587 * 7 6 5 27 27 C 1.38917 * 119.84402 * 359.42988 * 26 7 6 28 28 S 1.70641 * 124.24203 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.47298 * 269.97622 * 1 2 3 30 30 H 1.08994 * 109.47413 * 29.98108 * 1 2 3 31 31 H 1.09006 * 109.46745 * 149.98094 * 1 2 3 32 32 H 1.08004 * 119.67973 * 359.97438 * 5 4 3 33 33 H 1.08006 * 119.69670 * 180.02562 * 6 5 4 34 34 H 1.09006 * 110.36968 * 85.32946 * 11 10 8 35 35 H 1.08999 * 110.45893 * 323.05726 * 11 10 8 36 36 H 1.08993 * 111.00302 * 204.91403 * 12 11 10 37 37 H 1.09004 * 111.03429 * 81.07782 * 12 11 10 38 38 H 1.08993 * 110.71829 * 277.13183 * 13 12 11 39 39 H 1.09001 * 110.71954 * 153.86587 * 13 12 11 40 40 H 1.08998 * 109.47408 * 314.99608 * 16 14 10 41 41 H 1.09002 * 109.46650 * 194.99589 * 16 14 10 42 42 H 0.97001 * 119.99701 * 7.28371 * 17 16 14 43 43 H 0.97001 * 120.00088 * 0.02562 * 21 20 18 44 44 H 1.07998 * 120.07673 * 179.70181 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0587 0.0000 4 6 3.5634 0.9107 -0.0005 5 6 4.5761 1.8953 -0.0002 6 6 5.8863 1.5401 -0.0003 7 6 6.2597 0.1887 -0.0014 8 6 7.6874 -0.1853 -0.0009 9 8 8.0310 -1.2726 0.4211 10 7 8.6104 0.6784 -0.4686 11 6 8.3429 2.0484 -0.9429 12 6 9.5123 2.3700 -1.9065 13 6 10.7019 1.6712 -1.1966 14 6 10.0507 0.4099 -0.5912 15 1 10.2163 -0.4443 -1.2478 16 6 10.6468 0.1282 0.7894 17 7 10.2596 -1.2164 1.2234 18 6 10.5511 -1.6364 2.4937 19 1 11.0670 -0.9765 3.1756 20 6 10.1837 -2.9102 2.9052 21 7 9.5546 -3.7142 2.0744 22 14 10.5822 -3.4833 4.6379 23 1 10.0869 -4.8705 4.8266 24 1 12.0523 -3.4496 4.8446 25 1 9.9235 -2.5851 5.6201 26 6 5.2789 -0.7988 -0.0085 27 6 3.9368 -0.4402 -0.0026 28 16 2.4672 -1.4106 -0.0006 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 4.3055 2.9408 0.0002 33 1 6.6482 2.3056 0.0004 34 1 8.3388 2.7459 -0.1052 35 1 7.3918 2.0888 -1.4737 36 1 9.6762 3.4452 -1.9768 37 1 9.3372 1.9383 -2.8920 38 1 11.1111 2.3082 -0.4126 39 1 11.4743 1.3990 -1.9160 40 1 10.2731 0.8622 1.5033 41 1 11.7336 0.1938 0.7361 42 1 9.7965 -1.8091 0.6109 43 1 9.3481 -3.4167 1.1746 44 1 5.5606 -1.8413 -0.0142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716787281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:35 Heat of formation + Delta-G solvation = 69.440143 kcal Electronic energy + Delta-G solvation = -27849.577273 eV Core-core repulsion = 24087.972899 eV Total energy + Delta-G solvation = -3761.604374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.81739 -39.83216 -37.52982 -36.64525 -34.47596 -32.37833 -31.40120 -31.24854 -31.11250 -28.78029 -28.24100 -25.16654 -24.22342 -23.64103 -22.78466 -21.84910 -21.08977 -20.97834 -19.26697 -18.31986 -17.65143 -16.82026 -16.49618 -15.98317 -15.51938 -15.33685 -15.19447 -14.34672 -14.18102 -14.06147 -13.80207 -13.60330 -13.45623 -13.34130 -13.24199 -13.07777 -12.95228 -12.73054 -12.57219 -12.28786 -12.01143 -11.57747 -11.50859 -11.20910 -10.94380 -10.79228 -10.63561 -10.55290 -10.35443 -10.30885 -9.86163 -9.82526 -9.30283 -8.86620 -8.74553 -8.64005 -8.34060 -8.18212 -6.61151 -5.78621 -2.73545 0.05131 1.00571 1.03066 1.52134 1.93443 3.11463 3.17313 3.61228 3.63250 3.68686 3.76364 3.85642 4.39088 4.44617 4.49682 4.68829 4.77915 4.86477 4.90268 4.97299 5.01040 5.07305 5.14356 5.25644 5.33044 5.34846 5.46760 5.53829 5.64819 5.68244 5.76573 5.85592 5.89474 5.92506 5.99036 6.01076 6.14369 6.17585 6.34336 6.43502 6.50097 6.76741 6.92461 7.38449 7.80861 8.05210 8.60091 9.14159 9.67922 10.50881 10.68555 11.72508 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009795 B = 0.003673 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.059076 B = 7622.199779 C = 9950.335733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 N -0.473 5.473 4 C 0.098 3.902 5 C -0.075 4.075 6 C -0.096 4.096 7 C -0.099 4.099 8 C 0.557 3.443 9 O -0.463 6.463 10 N -0.610 5.610 11 C 0.089 3.911 12 C -0.134 4.134 13 C -0.124 4.124 14 C 0.130 3.870 15 H 0.073 0.927 16 C 0.152 3.848 17 N -0.731 5.731 18 C -0.329 4.329 19 H 0.053 0.947 20 C -0.043 4.043 21 N -0.942 5.942 22 Si 1.075 2.925 23 H -0.287 1.287 24 H -0.298 1.298 25 H -0.300 1.300 26 C -0.008 4.008 27 C -0.191 4.191 28 S 0.114 5.886 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.154 0.846 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.383 0.617 43 H 0.264 0.736 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.377 14.546 -11.047 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.197 4.197 3 N -0.188 5.188 4 C -0.023 4.023 5 C -0.096 4.096 6 C -0.117 4.117 7 C -0.106 4.106 8 C 0.343 3.657 9 O -0.334 6.334 10 N -0.347 5.347 11 C -0.034 4.034 12 C -0.172 4.172 13 C -0.162 4.162 14 C 0.027 3.973 15 H 0.091 0.909 16 C 0.022 3.978 17 N -0.383 5.383 18 C -0.461 4.461 19 H 0.071 0.929 20 C -0.242 4.242 21 N -0.588 5.588 22 Si 0.908 3.092 23 H -0.212 1.212 24 H -0.226 1.226 25 H -0.228 1.228 26 C -0.031 4.031 27 C -0.310 4.310 28 S 0.371 5.629 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.171 0.829 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.224 0.776 43 H 0.075 0.925 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.869 12.127 -9.560 21.437 hybrid contribution 0.639 2.036 -1.002 2.357 sum -14.230 14.163 -10.562 22.686 Atomic orbital electron populations 1.20567 0.84779 1.04526 1.04357 1.26824 1.01883 0.91211 0.99753 1.66143 1.04148 1.31364 1.17096 1.19296 0.89085 0.91722 1.02205 1.20243 0.90173 0.98406 1.00742 1.21536 0.96471 0.96078 0.97585 1.19914 0.93555 0.93482 1.03639 1.17720 0.84114 0.84862 0.78965 1.90919 1.79387 1.21156 1.41928 1.48279 1.07579 1.13953 1.64842 1.22698 0.99214 0.84375 0.97126 1.22802 0.94735 1.01018 0.98607 1.22635 0.97476 0.96112 1.00020 1.21936 0.79317 0.97422 0.98653 0.90851 1.20903 0.95813 0.89878 0.91175 1.42772 1.70367 1.11175 1.13973 1.19928 1.35178 1.00286 0.90678 0.92880 1.25551 0.99864 0.93085 1.05700 1.70710 1.42570 1.37632 1.07897 0.83324 0.75189 0.75928 0.74792 1.21220 1.22621 1.22753 1.20460 0.88125 1.00670 0.93800 1.23707 0.98769 0.96682 1.11819 1.84064 0.95305 1.09918 1.73647 0.89077 0.88995 0.89662 0.84430 0.82912 0.91205 0.89979 0.89939 0.90627 0.90255 0.90062 0.96328 0.96490 0.77646 0.92453 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.44 36.01 0.38 -0.15 16 2 C 0.09 0.96 7.29 -13.85 -0.10 0.85 16 3 N -0.47 -6.30 10.56 -8.96 -0.09 -6.40 16 4 C 0.10 1.38 7.00 -84.87 -0.59 0.79 16 5 C -0.07 -0.92 10.03 -39.33 -0.39 -1.31 16 6 C -0.10 -1.22 7.88 -39.74 -0.31 -1.53 16 7 C -0.10 -1.60 5.75 -104.99 -0.60 -2.20 16 8 C 0.56 10.77 7.49 -12.44 -0.09 10.68 16 9 O -0.46 -11.52 12.49 5.29 0.07 -11.46 16 10 N -0.61 -9.83 3.06 -164.21 -0.50 -10.33 16 11 C 0.09 0.96 4.99 -2.53 -0.01 0.95 16 12 C -0.13 -1.20 7.09 -24.58 -0.17 -1.37 16 13 C -0.12 -1.42 6.45 -24.90 -0.16 -1.58 16 14 C 0.13 2.19 3.08 -66.96 -0.21 1.98 16 15 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 16 C 0.15 3.31 5.62 -4.04 -0.02 3.29 16 17 N -0.73 -20.37 4.14 -59.91 -0.25 -20.62 16 18 C -0.33 -10.20 9.99 -15.06 -0.15 -10.35 16 19 H 0.05 1.62 7.83 -52.49 -0.41 1.21 16 20 C -0.04 -1.37 5.50 -17.43 -0.10 -1.47 16 21 N -0.94 -31.66 13.70 55.49 0.76 -30.90 16 22 Si 1.08 28.14 29.92 -169.99 -5.09 23.05 16 23 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 26 C -0.01 -0.13 9.61 -38.98 -0.37 -0.50 16 27 C -0.19 -2.82 6.54 -38.61 -0.25 -3.07 16 28 S 0.11 1.35 23.11 -107.50 -2.48 -1.13 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 33 H 0.15 1.57 4.20 -52.48 -0.22 1.35 16 34 H 0.07 0.68 7.35 -51.93 -0.38 0.30 16 35 H 0.08 0.77 5.97 -51.93 -0.31 0.46 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16 42 H 0.38 11.16 3.90 -40.82 -0.16 11.00 16 43 H 0.26 8.93 6.53 -40.82 -0.27 8.66 16 44 H 0.15 2.51 7.82 -52.49 -0.41 2.10 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -39.52 365.77 -10.84 -50.35 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.59 Total: 6.93 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.17 Total: -5.01 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -0.09 Total: -68.25 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 14 Polarization: 28.14 SS G_CDS: -5.09 Total: 23.05 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.48 Total: -1.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.52 -10.84 -50.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716787281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.793 kcal (2) G-P(sol) polarization free energy of solvation -39.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds