Wall clock time and date at job start Wed Apr 1 2020 03:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28054 * 124.23572 * 2 1 4 4 C 1.34416 * 117.91492 * 180.02562 * 3 2 1 5 5 C 1.41242 * 129.48542 * 180.02562 * 4 3 2 6 6 C 1.35744 * 120.63701 * 179.97438 * 5 4 3 7 7 C 1.40195 * 120.61579 * 0.02562 * 6 5 4 8 8 C 1.47596 * 120.12658 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00148 * 156.32284 * 8 7 6 10 10 N 1.34782 * 119.99603 * 336.31159 * 8 7 6 11 11 C 1.47419 * 125.65184 * 3.33477 * 10 8 7 12 12 C 1.54909 * 104.83543 * 204.17017 * 11 10 8 13 13 C 1.55157 * 101.57753 * 322.99230 * 12 11 10 14 14 C 1.47024 * 125.64559 * 183.38379 * 10 8 7 15 15 H 1.09003 * 110.00834 * 59.40930 * 14 10 8 16 16 C 1.53000 * 109.88006 * 298.31645 * 14 10 8 17 17 N 1.46502 * 109.47332 * 75.00191 * 16 14 10 18 18 C 1.36933 * 120.00134 * 187.28914 * 17 16 14 19 19 H 1.08001 * 119.99932 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00107 * 179.97438 * 18 17 16 21 21 N 1.31613 * 119.99981 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99837 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46992 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47241 * 299.99853 * 22 20 18 25 25 H 1.48505 * 109.47187 * 60.00077 * 22 20 18 26 26 C 1.39182 * 119.74958 * 0.29587 * 7 6 5 27 27 C 1.38917 * 119.84402 * 359.42988 * 26 7 6 28 28 S 1.70641 * 124.24203 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.47298 * 269.97622 * 1 2 3 30 30 H 1.08994 * 109.47413 * 29.98108 * 1 2 3 31 31 H 1.09006 * 109.46745 * 149.98094 * 1 2 3 32 32 H 1.08004 * 119.67973 * 359.97438 * 5 4 3 33 33 H 1.08006 * 119.69670 * 180.02562 * 6 5 4 34 34 H 1.09006 * 110.36968 * 85.32946 * 11 10 8 35 35 H 1.08999 * 110.45893 * 323.05726 * 11 10 8 36 36 H 1.08993 * 111.00302 * 204.91403 * 12 11 10 37 37 H 1.09004 * 111.03429 * 81.07782 * 12 11 10 38 38 H 1.08993 * 110.71829 * 277.13183 * 13 12 11 39 39 H 1.09001 * 110.71954 * 153.86587 * 13 12 11 40 40 H 1.08998 * 109.47408 * 314.99608 * 16 14 10 41 41 H 1.09002 * 109.46650 * 194.99589 * 16 14 10 42 42 H 0.97001 * 119.99701 * 7.28371 * 17 16 14 43 43 H 0.97001 * 120.00088 * 0.02562 * 21 20 18 44 44 H 1.07998 * 120.07673 * 179.70181 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0587 0.0000 4 6 3.5634 0.9107 -0.0005 5 6 4.5761 1.8953 -0.0002 6 6 5.8863 1.5401 -0.0003 7 6 6.2597 0.1887 -0.0014 8 6 7.6874 -0.1853 -0.0009 9 8 8.0310 -1.2726 0.4211 10 7 8.6104 0.6784 -0.4686 11 6 8.3429 2.0484 -0.9429 12 6 9.5123 2.3700 -1.9065 13 6 10.7019 1.6712 -1.1966 14 6 10.0507 0.4099 -0.5912 15 1 10.2163 -0.4443 -1.2478 16 6 10.6468 0.1282 0.7894 17 7 10.2596 -1.2164 1.2234 18 6 10.5511 -1.6364 2.4937 19 1 11.0670 -0.9765 3.1756 20 6 10.1837 -2.9102 2.9052 21 7 9.5546 -3.7142 2.0744 22 14 10.5822 -3.4833 4.6379 23 1 10.0869 -4.8705 4.8266 24 1 12.0523 -3.4496 4.8446 25 1 9.9235 -2.5851 5.6201 26 6 5.2789 -0.7988 -0.0085 27 6 3.9368 -0.4402 -0.0026 28 16 2.4672 -1.4106 -0.0006 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 4.3055 2.9408 0.0002 33 1 6.6482 2.3056 0.0004 34 1 8.3388 2.7459 -0.1052 35 1 7.3918 2.0888 -1.4737 36 1 9.6762 3.4452 -1.9768 37 1 9.3372 1.9383 -2.8920 38 1 11.1111 2.3082 -0.4126 39 1 11.4743 1.3990 -1.9160 40 1 10.2731 0.8622 1.5033 41 1 11.7336 0.1938 0.7361 42 1 9.7965 -1.8091 0.6109 43 1 9.3481 -3.4167 1.1746 44 1 5.5606 -1.8413 -0.0142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716787281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:34 Heat of formation + Delta-G solvation = 41.927674 kcal Electronic energy + Delta-G solvation = -27850.770303 eV Core-core repulsion = 24087.972899 eV Total energy + Delta-G solvation = -3762.797405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96005 -41.00563 -38.73069 -37.89217 -36.50955 -33.69266 -32.92030 -32.42137 -32.16066 -30.26585 -29.32107 -26.65774 -25.55293 -24.89393 -24.48466 -23.18522 -22.15823 -21.94078 -20.55330 -19.46905 -19.25363 -18.53680 -17.72675 -17.35037 -16.70832 -16.46091 -16.25769 -15.84416 -15.56376 -15.42654 -15.19107 -15.10666 -14.94871 -14.48429 -14.28538 -14.14820 -14.04242 -13.87181 -13.61560 -13.42140 -13.16835 -12.90514 -12.58186 -12.56705 -12.48001 -12.19984 -12.16694 -11.88225 -11.75569 -11.61310 -11.32504 -11.18445 -10.89438 -10.84131 -10.76433 -9.82871 -9.66942 -9.27929 -8.89560 -8.29954 -5.17240 -0.99324 -0.06575 0.04567 0.55332 0.85545 1.50063 1.63389 1.79393 1.88092 1.90772 2.56167 2.73597 2.75251 3.33283 3.41399 3.48534 3.56113 3.67994 3.82761 3.93980 3.95167 4.02082 4.17863 4.20776 4.29168 4.37946 4.53137 4.55123 4.62755 4.63563 4.70502 4.74320 4.81827 4.84160 4.90873 4.96338 5.05957 5.07785 5.11366 5.14040 5.35283 5.39136 5.50698 5.59146 6.41026 6.50286 6.63545 7.10097 7.40697 8.25108 8.35748 9.23673 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009795 B = 0.003673 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.059076 B = 7622.199779 C = 9950.335733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.103 3.897 3 N -0.493 5.493 4 C 0.093 3.907 5 C -0.067 4.067 6 C -0.084 4.084 7 C -0.118 4.118 8 C 0.546 3.454 9 O -0.537 6.537 10 N -0.607 5.607 11 C 0.076 3.924 12 C -0.118 4.118 13 C -0.114 4.114 14 C 0.130 3.870 15 H 0.048 0.952 16 C 0.148 3.852 17 N -0.747 5.747 18 C -0.335 4.335 19 H 0.054 0.946 20 C -0.109 4.109 21 N -0.972 5.972 22 Si 1.128 2.872 23 H -0.292 1.292 24 H -0.274 1.274 25 H -0.284 1.284 26 C -0.026 4.026 27 C -0.218 4.218 28 S 0.120 5.880 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.174 0.826 33 H 0.183 0.817 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.010 0.990 41 H 0.024 0.976 42 H 0.374 0.626 43 H 0.246 0.754 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.682 18.343 -11.484 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.180 4.180 3 N -0.208 5.208 4 C -0.028 4.028 5 C -0.087 4.087 6 C -0.104 4.104 7 C -0.125 4.125 8 C 0.335 3.665 9 O -0.413 6.413 10 N -0.342 5.342 11 C -0.045 4.045 12 C -0.155 4.155 13 C -0.152 4.152 14 C 0.026 3.974 15 H 0.066 0.934 16 C 0.020 3.980 17 N -0.398 5.398 18 C -0.467 4.467 19 H 0.072 0.928 20 C -0.301 4.301 21 N -0.620 5.620 22 Si 0.953 3.047 23 H -0.218 1.218 24 H -0.200 1.200 25 H -0.211 1.211 26 C -0.049 4.049 27 C -0.336 4.336 28 S 0.377 5.623 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.191 0.809 33 H 0.200 0.800 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.141 0.859 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.028 0.972 41 H 0.041 0.959 42 H 0.213 0.787 43 H 0.057 0.943 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.149 16.031 -10.047 24.874 hybrid contribution 0.931 0.916 -0.922 1.599 sum -15.218 16.947 -10.968 25.281 Atomic orbital electron populations 1.20851 0.81279 1.06261 1.05947 1.27698 1.03609 0.90051 0.96665 1.66266 1.03595 1.31931 1.19018 1.19740 0.90111 0.91665 1.01331 1.20637 0.89324 0.99740 0.99029 1.21736 0.97558 0.94632 0.96494 1.19792 0.91569 0.95288 1.05852 1.18344 0.85788 0.84310 0.78047 1.90875 1.80682 1.24215 1.45541 1.48405 1.06752 1.15688 1.63326 1.23150 1.01342 0.81390 0.98614 1.22834 0.91798 1.03119 0.97766 1.22641 0.98582 0.93379 1.00611 1.21914 0.80364 0.99756 0.95350 0.93361 1.21119 0.96190 0.86801 0.93872 1.43042 1.70293 1.13447 1.13004 1.20328 1.33980 1.00358 0.92013 0.92841 1.27186 0.99833 0.93821 1.09214 1.70827 1.45006 1.38431 1.07705 0.82658 0.76398 0.75259 0.70380 1.21763 1.19974 1.21090 1.20289 0.89529 0.99532 0.95556 1.23846 0.98768 0.98164 1.12866 1.84037 0.94292 1.10440 1.73541 0.87303 0.87691 0.87407 0.80882 0.80028 0.89122 0.87968 0.85915 0.90019 0.89243 0.88405 0.97160 0.95888 0.78693 0.94300 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.44 71.24 0.74 -0.07 16 2 C 0.10 2.07 7.29 88.66 0.65 2.72 16 3 N -0.49 -12.20 10.56 -182.20 -1.92 -14.12 16 4 C 0.09 2.53 7.00 39.95 0.28 2.81 16 5 C -0.07 -1.49 10.03 22.43 0.22 -1.26 16 6 C -0.08 -2.00 7.88 22.17 0.17 -1.82 16 7 C -0.12 -4.01 5.75 -20.11 -0.12 -4.13 16 8 C 0.55 22.54 7.49 86.71 0.65 23.19 16 9 O -0.54 -29.33 12.49 -4.00 -0.05 -29.38 16 10 N -0.61 -19.75 3.06 -791.70 -2.43 -22.18 16 11 C 0.08 1.41 4.99 86.86 0.43 1.84 16 12 C -0.12 -1.61 7.09 31.99 0.23 -1.38 16 13 C -0.11 -2.32 6.45 31.78 0.20 -2.11 16 14 C 0.13 4.45 3.08 45.34 0.14 4.59 16 15 H 0.05 1.88 8.12 -2.39 -0.02 1.86 16 16 C 0.15 6.67 5.62 86.38 0.49 7.16 16 17 N -0.75 -43.98 4.14 -343.45 -1.42 -45.40 16 18 C -0.33 -21.56 9.99 84.03 0.84 -20.72 16 19 H 0.05 3.34 7.83 -2.91 -0.02 3.32 16 20 C -0.11 -7.15 5.50 84.86 0.47 -6.68 16 21 N -0.97 -68.86 13.70 21.65 0.30 -68.56 16 22 Si 1.13 58.14 29.92 68.60 2.05 60.19 16 23 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 24 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 26 C -0.03 -0.92 9.61 22.66 0.22 -0.70 16 27 C -0.22 -6.64 6.54 22.90 0.15 -6.49 16 28 S 0.12 2.85 23.11 -56.49 -1.31 1.55 16 29 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.18 3.14 4.20 -2.91 -0.01 3.13 16 34 H 0.09 1.38 7.35 -2.38 -0.02 1.36 16 35 H 0.10 1.55 5.97 -2.39 -0.01 1.53 16 36 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.09 1.68 7.85 -2.39 -0.02 1.67 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.02 1.02 8.10 -2.39 -0.02 1.00 16 42 H 0.37 23.53 3.90 -92.71 -0.36 23.17 16 43 H 0.25 17.97 6.53 -92.71 -0.61 17.36 16 44 H 0.12 4.64 7.82 -2.91 -0.02 4.62 16 Total: -1.00 -94.69 365.77 1.84 -92.85 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.85 Total: 28.11 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.77 Total: -3.06 kcal Atomic # 7 Polarization: -144.80 SS G_CDS: -5.47 Total: -150.27 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.05 Total: -29.38 kcal Atomic # 14 Polarization: 58.14 SS G_CDS: 2.05 Total: 60.19 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.31 Total: 1.55 kcal Total: -94.69 1.84 -92.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716787281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.781 kcal (2) G-P(sol) polarization free energy of solvation -94.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds