Wall clock time and date at job start Wed Apr 1 2020 03:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.46924 * 2 1 4 4 C 1.38249 * 120.00055 * 265.96459 * 3 2 1 5 5 C 1.38209 * 120.00092 * 180.02562 * 4 3 2 6 6 C 1.38262 * 119.99816 * 0.02562 * 5 4 3 7 7 C 1.38213 * 119.99818 * 359.97438 * 6 5 4 8 8 C 1.38211 * 119.99482 * 85.99084 * 3 2 1 9 9 C 1.50696 * 120.00594 * 0.27390 * 8 3 2 10 10 H 1.08996 * 109.47171 * 316.02575 * 9 8 3 11 11 C 1.52997 * 109.47447 * 196.02062 * 9 8 3 12 12 N 1.46504 * 109.47419 * 182.56220 * 11 9 8 13 13 C 1.34774 * 120.00010 * 180.02562 * 12 11 9 14 14 O 1.21630 * 120.00247 * 0.02562 * 13 12 11 15 15 C 1.47103 * 119.99836 * 180.02562 * 13 12 11 16 16 C 1.38380 * 127.99758 * 179.70390 * 15 13 12 17 17 C 1.37575 * 111.26460 * 179.88016 * 16 15 13 18 18 N 1.29559 * 117.94736 * 0.43819 * 17 16 15 19 19 S 1.56310 * 110.38132 * 359.74905 * 18 17 16 20 20 N 1.46500 * 109.46857 * 76.02115 * 9 8 3 21 21 C 1.36938 * 119.99983 * 55.33060 * 20 9 8 22 22 H 1.08001 * 120.00124 * 5.13862 * 21 20 9 23 23 C 1.38817 * 120.00007 * 185.14508 * 21 20 9 24 24 N 1.31618 * 119.99764 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99886 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47146 * 89.99815 * 25 23 21 27 27 H 1.48498 * 109.47050 * 209.99828 * 25 23 21 28 28 H 1.48501 * 109.47445 * 329.99982 * 25 23 21 29 29 H 1.09004 * 109.46926 * 305.04909 * 1 2 3 30 30 H 1.08990 * 109.47634 * 65.04957 * 1 2 3 31 31 H 1.09003 * 109.47122 * 185.05736 * 1 2 3 32 32 H 1.08994 * 109.46989 * 240.00324 * 2 1 3 33 33 H 1.09000 * 109.47607 * 120.00253 * 2 1 3 34 34 H 1.08011 * 120.00289 * 0.06424 * 4 3 2 35 35 H 1.08000 * 119.99995 * 180.02562 * 5 4 3 36 36 H 1.08003 * 119.99771 * 180.02562 * 6 5 4 37 37 H 1.08000 * 119.99784 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47171 * 302.57008 * 11 9 8 39 39 H 1.09006 * 109.47033 * 62.56944 * 11 9 8 40 40 H 0.96996 * 119.99422 * 0.02562 * 12 11 9 41 41 H 1.07999 * 124.36750 * 0.03023 * 16 15 13 42 42 H 1.07995 * 121.03020 * 180.18908 * 17 16 15 43 43 H 0.96997 * 119.99934 * 235.32341 * 20 9 8 44 44 H 0.96997 * 119.99820 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3421 2.0446 -1.1943 5 6 2.8033 3.3474 -1.1943 6 6 2.9553 4.0269 0.0002 7 6 2.6455 3.4034 1.1942 8 6 2.1837 2.1002 1.1941 9 6 1.8524 1.4182 2.4964 10 1 0.9129 0.8752 2.3935 11 6 1.7166 2.4675 3.6016 12 7 1.4551 1.8000 4.8793 13 6 1.2981 2.5301 6.0012 14 8 1.3731 3.7431 5.9529 15 6 1.0360 1.8599 7.2842 16 6 0.8552 2.4403 8.5273 17 6 0.6284 1.4884 9.4942 18 7 0.6239 0.2443 9.1323 19 16 0.8864 0.1233 7.5962 20 7 2.9231 0.4802 2.8425 21 6 4.2170 0.9200 2.9301 22 1 4.4379 1.9721 2.8261 23 6 5.2447 0.0137 3.1524 24 7 4.9754 -1.2684 3.2794 25 14 7.0097 0.6137 3.2711 26 1 7.3271 0.9412 4.6844 27 1 7.9276 -0.4505 2.7914 28 1 7.1775 1.8274 2.4320 29 1 -0.3633 0.5902 0.8413 30 1 -0.3634 0.4335 -0.9316 31 1 -0.3633 -1.0237 0.0906 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.2232 1.5138 -2.1275 35 1 3.0449 3.8348 -2.1273 36 1 3.3152 5.0452 0.0002 37 1 2.7638 3.9343 2.1272 38 1 2.6407 3.0409 3.6736 39 1 0.8902 3.1382 3.3663 40 1 1.3949 0.8327 4.9176 41 1 0.8857 3.5036 8.7138 42 1 0.4633 1.7691 10.5239 43 1 2.7156 -0.4525 3.0097 44 1 5.6935 -1.9017 3.4344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724512476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:22 Heat of formation + Delta-G solvation = 25.201939 kcal Electronic energy + Delta-G solvation = -27788.394244 eV Core-core repulsion = 24024.871557 eV Total energy + Delta-G solvation = -3763.522687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.10257 -40.52431 -39.75858 -37.41857 -35.27064 -34.84864 -33.63483 -32.48608 -31.33362 -30.07990 -28.98995 -27.02825 -26.02091 -24.62724 -24.04810 -23.01875 -21.54746 -21.40413 -20.79543 -19.56814 -19.28649 -17.95806 -17.43098 -17.02697 -16.68789 -16.46602 -16.30860 -15.95869 -15.73200 -15.51126 -15.22836 -15.01521 -14.70028 -14.31214 -14.22493 -14.21966 -13.92543 -13.82655 -13.58169 -13.02943 -12.91626 -12.86286 -12.53196 -12.45861 -12.36725 -12.12141 -11.91197 -11.80115 -11.73632 -11.60468 -11.29079 -11.22510 -10.90633 -10.79599 -10.07080 -9.81379 -9.56080 -9.33083 -8.95422 -7.89545 -5.15403 -0.73515 0.26654 0.64994 0.66634 0.89133 1.24207 1.42814 1.46539 1.51073 1.99846 2.14223 2.57064 3.00875 3.43571 3.65815 3.91097 4.01623 4.03456 4.10064 4.11614 4.12863 4.23586 4.39447 4.41094 4.45996 4.64252 4.70360 4.76970 4.78879 4.83054 4.89325 4.91794 5.06493 5.17838 5.24244 5.29458 5.36903 5.42927 5.49909 5.55641 5.62653 5.74910 5.78773 5.99573 6.29123 6.33578 6.44833 7.06275 7.42303 8.06595 8.35030 9.32062 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009475 B = 0.003908 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.347291 B = 7163.064229 C = 8260.662492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.072 4.072 4 C -0.132 4.132 5 C -0.129 4.129 6 C -0.138 4.138 7 C -0.130 4.130 8 C -0.080 4.080 9 C 0.202 3.798 10 H 0.094 0.906 11 C 0.115 3.885 12 N -0.692 5.692 13 C 0.591 3.409 14 O -0.570 6.570 15 C -0.289 4.289 16 C -0.106 4.106 17 C 0.063 3.937 18 N -0.541 5.541 19 S 0.437 5.563 20 N -0.707 5.707 21 C -0.207 4.207 22 H 0.063 0.937 23 C -0.056 4.056 24 N -0.954 5.954 25 Si 0.940 3.060 26 H -0.296 1.296 27 H -0.298 1.298 28 H -0.281 1.281 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.406 0.594 41 H 0.189 0.811 42 H 0.220 0.780 43 H 0.381 0.619 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.599 5.010 0.658 13.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.073 4.073 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.156 4.156 7 C -0.149 4.149 8 C -0.082 4.082 9 C 0.093 3.907 10 H 0.112 0.888 11 C -0.011 4.011 12 N -0.342 5.342 13 C 0.376 3.624 14 O -0.451 6.451 15 C -0.422 4.422 16 C -0.143 4.143 17 C -0.128 4.128 18 N -0.371 5.371 19 S 0.592 5.408 20 N -0.346 5.346 21 C -0.339 4.339 22 H 0.081 0.919 23 C -0.249 4.249 24 N -0.605 5.605 25 Si 0.772 3.228 26 H -0.224 1.224 27 H -0.225 1.225 28 H -0.206 1.206 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.133 0.867 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.242 0.758 41 H 0.206 0.794 42 H 0.236 0.764 43 H 0.215 0.785 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.467 3.722 0.370 13.016 hybrid contribution 1.623 1.322 0.741 2.221 sum -10.844 5.044 1.111 12.011 Atomic orbital electron populations 1.21688 0.93362 1.02201 1.02086 1.20556 0.96961 0.92252 1.02785 1.19845 0.98570 0.96283 0.92566 1.21232 1.00540 0.95599 0.97666 1.21317 0.99986 0.94922 0.98484 1.21302 1.01001 1.00686 0.92572 1.21262 0.99826 0.95283 0.98503 1.20167 0.99061 0.93759 0.95255 1.19499 0.92439 0.90187 0.88613 0.88797 1.21951 1.00067 0.96003 0.83056 1.45613 1.70307 1.10769 1.07473 1.16990 0.76636 0.86123 0.82615 1.90757 1.53460 1.14427 1.86466 1.26846 1.14309 1.02492 0.98579 1.22416 0.98800 1.03786 0.89251 1.22734 1.00947 0.85033 1.04130 1.72267 1.24001 1.26440 1.14439 1.81898 1.56071 1.02598 1.00194 1.42362 1.02476 1.08047 1.81738 1.19139 0.84527 0.92064 1.38209 0.91921 1.25109 0.99772 0.95618 1.04438 1.69717 1.31406 1.01028 1.58341 0.85647 0.83211 0.76875 0.77095 1.22371 1.22496 1.20628 0.92752 0.92096 0.91481 0.91587 0.91531 0.84874 0.84178 0.84952 0.86726 0.93192 0.90922 0.75802 0.79374 0.76423 0.78480 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.73 71.98 0.70 -2.36 16 2 C -0.09 -2.56 5.42 29.85 0.16 -2.40 16 3 C -0.07 -2.30 5.13 -19.87 -0.10 -2.40 16 4 C -0.13 -3.79 9.69 22.27 0.22 -3.58 16 5 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 6 C -0.14 -4.04 10.05 22.27 0.22 -3.82 16 7 C -0.13 -4.36 8.76 22.27 0.20 -4.16 16 8 C -0.08 -2.73 4.61 -19.87 -0.09 -2.82 16 9 C 0.20 6.86 2.20 44.24 0.10 6.95 16 10 H 0.09 2.78 6.20 -2.39 -0.01 2.77 16 11 C 0.12 3.91 3.98 86.38 0.34 4.25 16 12 N -0.69 -22.57 5.40 -466.69 -2.52 -25.09 16 13 C 0.59 19.93 7.80 86.57 0.68 20.61 16 14 O -0.57 -22.43 16.96 -4.13 -0.07 -22.50 16 15 C -0.29 -8.05 6.76 24.63 0.17 -7.88 16 16 C -0.11 -2.38 10.40 22.15 0.23 -2.15 16 17 C 0.06 1.25 11.15 84.87 0.95 2.19 16 18 N -0.54 -13.29 11.29 -85.45 -0.96 -14.26 16 19 S 0.44 10.95 22.81 -56.49 -1.29 9.66 16 20 N -0.71 -29.75 3.95 -326.51 -1.29 -31.04 16 21 C -0.21 -10.33 8.79 84.03 0.74 -9.59 16 22 H 0.06 3.22 6.99 -2.91 -0.02 3.20 16 23 C -0.06 -3.02 5.50 84.86 0.47 -2.55 16 24 N -0.95 -53.53 13.06 21.65 0.28 -53.25 16 25 Si 0.94 45.53 29.55 68.60 2.03 47.56 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 27 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 28 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 29 H 0.05 1.22 6.91 -2.38 -0.02 1.20 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.84 8.06 -2.39 -0.02 1.82 16 33 H 0.07 2.28 6.24 -2.39 -0.01 2.26 16 34 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 36 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.11 3.87 5.89 -2.91 -0.02 3.85 16 38 H 0.05 1.97 6.02 -2.39 -0.01 1.96 16 39 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.41 12.40 7.60 -92.71 -0.70 11.70 16 41 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.22 2.47 8.06 -2.91 -0.02 2.45 16 43 H 0.38 17.03 7.86 -92.71 -0.73 16.30 16 44 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -65.05 379.17 0.99 -64.06 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -0.38 Total: 37.85 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 5.19 Total: -13.00 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -4.49 Total: -123.63 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.07 Total: -22.50 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 16 Polarization: 10.95 SS G_CDS: -1.29 Total: 9.66 kcal Total: -65.05 0.99 -64.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724512476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.257 kcal (2) G-P(sol) polarization free energy of solvation -65.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds