Wall clock time and date at job start Wed Apr 1 2020 02:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99586 * 2 1 4 4 H 1.48496 * 109.47026 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47121 * 119.99955 * 3 2 1 6 6 H 1.48497 * 109.46934 * 239.99768 * 3 2 1 7 7 C 1.38806 * 120.00554 * 180.27317 * 2 1 3 8 8 H 1.07995 * 120.00691 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99612 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99663 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46920 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47348 * 180.02562 * 11 10 9 13 13 H 1.09007 * 110.88281 * 305.70437 * 12 11 10 14 14 C 1.55154 * 111.00642 * 181.82149 * 12 11 10 15 15 C 1.54375 * 102.91876 * 206.45351 * 14 12 11 16 16 N 1.47022 * 107.28969 * 22.13847 * 15 14 12 17 17 C 1.34775 * 125.64634 * 181.06036 * 16 15 14 18 18 O 1.21589 * 119.99762 * 174.42937 * 17 16 15 19 19 C 1.47553 * 120.00343 * 354.42178 * 17 16 15 20 20 C 1.40123 * 120.59293 * 186.66614 * 19 17 16 21 21 N 1.30607 * 121.17242 * 179.76685 * 20 19 17 22 22 C 1.34909 * 122.44888 * 0.50648 * 21 20 19 23 23 C 1.40610 * 128.46085 * 179.74216 * 22 21 20 24 24 C 1.32286 * 115.91417 * 180.02562 * 23 22 21 25 25 S 1.75507 * 110.83379 * 359.97438 * 24 23 22 26 26 C 1.40102 * 119.27387 * 359.76543 * 22 21 20 27 27 C 1.39366 * 119.74854 * 359.97438 * 26 22 21 28 28 C 1.47427 * 108.70321 * 1.08839 * 16 15 14 29 29 H 0.97000 * 120.00376 * 359.72448 * 1 2 3 30 30 H 0.97000 * 120.00255 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47102 * 300.00187 * 10 9 7 32 32 H 1.08999 * 109.46788 * 60.00721 * 10 9 7 33 33 H 1.08997 * 109.47317 * 300.00196 * 11 10 9 34 34 H 1.09005 * 109.47366 * 60.00167 * 11 10 9 35 35 H 1.09002 * 110.72153 * 324.78502 * 14 12 11 36 36 H 1.08998 * 110.72217 * 88.06323 * 14 12 11 37 37 H 1.09005 * 109.84541 * 262.72799 * 15 14 12 38 38 H 1.08998 * 109.89819 * 141.57603 * 15 14 12 39 39 H 1.07999 * 119.41067 * 0.02562 * 20 19 17 40 40 H 1.08000 * 122.04415 * 0.02562 * 23 22 21 41 41 H 1.07997 * 124.58141 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.73575 * 179.97438 * 27 26 22 43 43 H 1.08990 * 110.36691 * 217.03413 * 28 16 15 44 44 H 1.09003 * 110.45165 * 94.75959 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0103 -1.2020 -0.0057 8 1 3.0902 -1.2020 -0.0053 9 7 1.3256 -2.3879 -0.0109 10 6 2.0583 -3.6566 -0.0175 11 6 1.0641 -4.8196 -0.0229 12 6 1.8291 -6.1446 -0.0292 13 1 2.5381 -6.1800 -0.8564 14 6 0.8535 -7.3499 -0.0808 15 6 1.6648 -8.4796 0.5889 16 7 2.6940 -7.8428 1.4236 17 6 3.6208 -8.4896 2.1579 18 8 4.4887 -7.8608 2.7321 19 6 3.5821 -9.9607 2.2651 20 6 4.4507 -10.6355 3.1332 21 7 4.4231 -11.9369 3.2403 22 6 3.5753 -12.7044 2.5245 23 6 3.4415 -14.1040 2.5354 24 6 2.5219 -14.6031 1.7259 25 16 1.7071 -13.3240 0.8428 26 6 2.6837 -12.0927 1.6336 27 6 2.6833 -10.7056 1.4989 28 6 2.5438 -6.3795 1.3250 29 1 -0.4851 0.8400 0.0040 30 1 0.3556 -2.3880 -0.0109 31 1 2.6842 -3.7101 -0.9081 32 1 2.6855 -3.7186 0.8718 33 1 0.4377 -4.7664 0.8676 34 1 0.4370 -4.7575 -0.9124 35 1 -0.0525 -7.1374 0.4869 36 1 0.6122 -7.6068 -1.1122 37 1 2.1370 -9.0985 -0.1741 38 1 1.0088 -9.0895 1.2101 39 1 5.1526 -10.0691 3.7273 40 1 4.0521 -14.7332 3.1660 41 1 2.3023 -15.6555 1.6225 42 1 2.0031 -10.2175 0.8166 43 1 3.5211 -5.8969 1.3269 44 1 1.9339 -6.0030 2.1462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724715895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:45 Heat of formation + Delta-G solvation = 56.479735 kcal Electronic energy + Delta-G solvation = -26336.971397 eV Core-core repulsion = 22574.805017 eV Total energy + Delta-G solvation = -3762.166380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.30728 -39.95282 -37.98181 -36.11118 -35.30599 -33.71175 -32.55985 -31.13110 -30.33364 -29.74212 -27.39611 -25.71810 -24.45694 -24.09423 -23.11371 -21.68651 -21.32774 -20.66965 -20.15826 -18.04620 -17.96977 -17.13797 -16.97354 -16.40404 -16.19713 -15.79196 -15.26334 -14.85816 -14.69829 -14.61166 -14.15430 -14.06816 -13.71889 -13.46122 -13.25479 -13.13969 -13.07703 -12.83417 -12.74716 -12.17387 -12.12411 -11.75648 -11.63581 -11.33756 -11.13090 -10.95735 -10.82338 -10.70202 -10.54375 -10.41609 -10.39187 -10.01537 -9.81136 -9.66807 -9.28115 -8.90365 -8.85405 -8.55495 -6.91250 -5.75440 -3.04082 -0.32598 0.55567 0.83116 1.29051 1.40695 2.57039 2.61335 3.36632 3.45869 3.49901 3.51142 3.58560 3.94538 4.03033 4.26437 4.31019 4.44643 4.54218 4.58469 4.63464 4.76638 4.84759 4.92911 5.03296 5.11078 5.25756 5.28630 5.43812 5.47520 5.54318 5.54635 5.59865 5.66585 5.74895 5.83529 5.91773 6.01796 6.05875 6.19937 6.33196 6.35051 6.82656 6.86456 7.15221 7.34714 7.71374 7.82270 8.43766 9.54744 10.12641 10.47021 11.47444 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.027667 B = 0.001814 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.787601 B =15432.608927 C =16301.932749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.151 3.849 11 C -0.115 4.115 12 C -0.094 4.094 13 H 0.087 0.913 14 C -0.130 4.130 15 C 0.085 3.915 16 N -0.610 5.610 17 C 0.579 3.421 18 O -0.526 6.526 19 C -0.170 4.170 20 C 0.183 3.817 21 N -0.462 5.462 22 C 0.143 3.857 23 C -0.119 4.119 24 C -0.165 4.165 25 S 0.121 5.879 26 C -0.211 4.211 27 C -0.033 4.033 28 C 0.109 3.891 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.178 0.822 40 H 0.155 0.845 41 H 0.179 0.821 42 H 0.176 0.824 43 H 0.087 0.913 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.424 -33.509 1.159 33.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.168 4.168 15 C -0.037 4.037 16 N -0.344 5.344 17 C 0.367 3.633 18 O -0.403 6.403 19 C -0.178 4.178 20 C 0.010 3.990 21 N -0.170 5.170 22 C 0.009 3.991 23 C -0.150 4.150 24 C -0.301 4.301 25 S 0.384 5.616 26 C -0.328 4.328 27 C -0.062 4.062 28 C -0.012 4.012 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.195 0.805 40 H 0.173 0.827 41 H 0.196 0.804 42 H 0.192 0.808 43 H 0.105 0.895 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.459 -33.631 0.999 33.677 hybrid contribution 0.650 1.192 0.459 1.433 sum 2.109 -32.438 1.457 32.539 Atomic orbital electron populations 1.69645 1.05108 1.25749 1.57854 1.24741 0.95545 0.97716 1.03055 0.86257 0.78517 0.83480 0.77886 1.21680 1.21237 1.21273 1.19201 0.91045 0.84216 1.42631 0.91225 1.42352 1.05845 1.00068 1.89549 1.20685 0.93546 0.85573 0.97889 1.21687 0.98587 0.92359 1.02643 1.22361 0.97187 0.94940 0.96895 0.89471 1.22811 0.98494 0.93913 1.01596 1.22582 0.90336 0.96855 0.93928 1.48392 1.31393 1.08513 1.46087 1.17472 0.80869 0.85975 0.78980 1.90839 1.35138 1.67899 1.46442 1.20901 1.00594 0.94382 1.01949 1.22930 0.94255 0.88811 0.92963 1.67722 1.20737 1.06503 1.22005 1.19348 0.92629 0.93972 0.93150 1.19679 1.00894 0.92355 1.02061 1.25445 1.00226 1.03823 1.00642 1.84348 1.38749 0.94398 1.44081 1.23588 1.04752 0.98912 1.05589 1.22555 0.96276 0.90895 0.96479 1.22501 1.02248 0.78502 0.97954 0.93493 0.78332 0.96432 0.96242 0.91506 0.91180 0.89809 0.89506 0.90553 0.90576 0.80502 0.82723 0.80376 0.80761 0.89499 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.60 5.60 -59.91 -0.34 -18.93 16 10 C 0.15 2.94 6.14 -4.04 -0.02 2.91 16 11 C -0.11 -1.65 4.84 -26.73 -0.13 -1.78 16 12 C -0.09 -1.04 3.04 -88.47 -0.27 -1.31 16 13 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 14 C -0.13 -1.03 6.42 -24.87 -0.16 -1.19 16 15 C 0.09 0.65 4.87 -3.04 -0.01 0.63 16 16 N -0.61 -6.79 3.33 -172.92 -0.58 -7.37 16 17 C 0.58 7.39 7.81 -12.46 -0.10 7.29 16 18 O -0.53 -8.51 16.62 5.29 0.09 -8.42 16 19 C -0.17 -1.82 5.89 -104.87 -0.62 -2.44 16 20 C 0.18 2.00 10.74 -17.37 -0.19 1.82 16 21 N -0.46 -5.19 10.39 -11.01 -0.11 -5.30 16 22 C 0.14 1.40 6.97 -84.92 -0.59 0.81 16 23 C -0.12 -0.84 10.16 -40.61 -0.41 -1.25 16 24 C -0.16 -0.83 11.08 28.81 0.32 -0.51 16 25 S 0.12 0.73 23.29 -107.50 -2.50 -1.78 16 26 C -0.21 -1.85 6.49 -38.46 -0.25 -2.10 16 27 C -0.03 -0.29 8.72 -38.64 -0.34 -0.63 16 28 C 0.11 1.35 5.74 -2.53 -0.01 1.34 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.38 10.11 7.67 -40.82 -0.31 9.79 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.39 7.59 -51.93 -0.39 0.00 16 33 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.46 6.74 -51.93 -0.35 0.11 16 38 H 0.08 0.47 6.74 -51.93 -0.35 0.12 16 39 H 0.18 1.79 7.67 -52.49 -0.40 1.39 16 40 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.18 0.33 8.06 -52.49 -0.42 -0.09 16 42 H 0.18 1.13 2.89 -54.07 -0.16 0.98 16 43 H 0.09 1.22 7.95 -51.93 -0.41 0.81 16 44 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -34.60 373.65 -10.85 -45.45 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.71 Total: 4.64 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -3.03 Total: -3.88 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.30 Total: -59.25 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.50 Total: -1.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.60 -10.85 -45.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724715895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.931 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds