Wall clock time and date at job start Wed Apr 1 2020 02:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99586 * 2 1 4 4 H 1.48496 * 109.47026 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47121 * 119.99955 * 3 2 1 6 6 H 1.48497 * 109.46934 * 239.99768 * 3 2 1 7 7 C 1.38806 * 120.00554 * 180.27317 * 2 1 3 8 8 H 1.07995 * 120.00691 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99612 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99663 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46920 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47348 * 180.02562 * 11 10 9 13 13 H 1.09007 * 110.88281 * 305.70437 * 12 11 10 14 14 C 1.55154 * 111.00642 * 181.82149 * 12 11 10 15 15 C 1.54375 * 102.91876 * 206.45351 * 14 12 11 16 16 N 1.47022 * 107.28969 * 22.13847 * 15 14 12 17 17 C 1.34775 * 125.64634 * 181.06036 * 16 15 14 18 18 O 1.21589 * 119.99762 * 174.42937 * 17 16 15 19 19 C 1.47553 * 120.00343 * 354.42178 * 17 16 15 20 20 C 1.40123 * 120.59293 * 186.66614 * 19 17 16 21 21 N 1.30607 * 121.17242 * 179.76685 * 20 19 17 22 22 C 1.34909 * 122.44888 * 0.50648 * 21 20 19 23 23 C 1.40610 * 128.46085 * 179.74216 * 22 21 20 24 24 C 1.32286 * 115.91417 * 180.02562 * 23 22 21 25 25 S 1.75507 * 110.83379 * 359.97438 * 24 23 22 26 26 C 1.40102 * 119.27387 * 359.76543 * 22 21 20 27 27 C 1.39366 * 119.74854 * 359.97438 * 26 22 21 28 28 C 1.47427 * 108.70321 * 1.08839 * 16 15 14 29 29 H 0.97000 * 120.00376 * 359.72448 * 1 2 3 30 30 H 0.97000 * 120.00255 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47102 * 300.00187 * 10 9 7 32 32 H 1.08999 * 109.46788 * 60.00721 * 10 9 7 33 33 H 1.08997 * 109.47317 * 300.00196 * 11 10 9 34 34 H 1.09005 * 109.47366 * 60.00167 * 11 10 9 35 35 H 1.09002 * 110.72153 * 324.78502 * 14 12 11 36 36 H 1.08998 * 110.72217 * 88.06323 * 14 12 11 37 37 H 1.09005 * 109.84541 * 262.72799 * 15 14 12 38 38 H 1.08998 * 109.89819 * 141.57603 * 15 14 12 39 39 H 1.07999 * 119.41067 * 0.02562 * 20 19 17 40 40 H 1.08000 * 122.04415 * 0.02562 * 23 22 21 41 41 H 1.07997 * 124.58141 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.73575 * 179.97438 * 27 26 22 43 43 H 1.08990 * 110.36691 * 217.03413 * 28 16 15 44 44 H 1.09003 * 110.45165 * 94.75959 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0103 -1.2020 -0.0057 8 1 3.0902 -1.2020 -0.0053 9 7 1.3256 -2.3879 -0.0109 10 6 2.0583 -3.6566 -0.0175 11 6 1.0641 -4.8196 -0.0229 12 6 1.8291 -6.1446 -0.0292 13 1 2.5381 -6.1800 -0.8564 14 6 0.8535 -7.3499 -0.0808 15 6 1.6648 -8.4796 0.5889 16 7 2.6940 -7.8428 1.4236 17 6 3.6208 -8.4896 2.1579 18 8 4.4887 -7.8608 2.7321 19 6 3.5821 -9.9607 2.2651 20 6 4.4507 -10.6355 3.1332 21 7 4.4231 -11.9369 3.2403 22 6 3.5753 -12.7044 2.5245 23 6 3.4415 -14.1040 2.5354 24 6 2.5219 -14.6031 1.7259 25 16 1.7071 -13.3240 0.8428 26 6 2.6837 -12.0927 1.6336 27 6 2.6833 -10.7056 1.4989 28 6 2.5438 -6.3795 1.3250 29 1 -0.4851 0.8400 0.0040 30 1 0.3556 -2.3880 -0.0109 31 1 2.6842 -3.7101 -0.9081 32 1 2.6855 -3.7186 0.8718 33 1 0.4377 -4.7664 0.8676 34 1 0.4370 -4.7575 -0.9124 35 1 -0.0525 -7.1374 0.4869 36 1 0.6122 -7.6068 -1.1122 37 1 2.1370 -9.0985 -0.1741 38 1 1.0088 -9.0895 1.2101 39 1 5.1526 -10.0691 3.7273 40 1 4.0521 -14.7332 3.1660 41 1 2.3023 -15.6555 1.6225 42 1 2.0031 -10.2175 0.8166 43 1 3.5211 -5.8969 1.3269 44 1 1.9339 -6.0030 2.1462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724715895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:44 Heat of formation + Delta-G solvation = 33.887373 kcal Electronic energy + Delta-G solvation = -26337.951075 eV Core-core repulsion = 22574.805017 eV Total energy + Delta-G solvation = -3763.146058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.07843 -40.75492 -38.96832 -36.93651 -36.70616 -34.93715 -33.74521 -32.57994 -31.05046 -30.83485 -28.69391 -26.67699 -25.52964 -25.15475 -24.25293 -22.81641 -22.18818 -21.52670 -21.16645 -19.16193 -18.75578 -18.65841 -17.71890 -17.23316 -17.02428 -16.66474 -16.62183 -16.19780 -15.63987 -15.39539 -15.22176 -15.14318 -14.97997 -14.67544 -14.50691 -14.22486 -13.80156 -13.71210 -13.64755 -13.30049 -12.99294 -12.81597 -12.80136 -12.79393 -12.30837 -12.20325 -12.11708 -11.95903 -11.70249 -11.68387 -11.51790 -11.43219 -11.34108 -10.92093 -10.57297 -10.00405 -9.73508 -9.04701 -9.00269 -7.96322 -5.24938 -0.98479 -0.14235 0.30691 0.79668 0.81110 1.46423 1.49407 1.55612 1.70578 1.75773 2.55337 2.60828 2.95043 3.20012 3.36918 3.37716 3.53571 3.58589 3.67755 3.78457 4.02658 4.04027 4.12121 4.18621 4.26852 4.36646 4.40591 4.49835 4.55856 4.59448 4.70300 4.75999 4.80089 4.88747 4.91853 4.92721 5.02254 5.08785 5.12618 5.25729 5.31025 5.39006 5.46519 5.49441 6.26823 6.27926 6.62305 6.88153 7.32931 8.09679 8.32935 9.26801 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.027667 B = 0.001814 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.787601 B =15432.608927 C =16301.932749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.292 1.292 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.071 0.929 9 N -0.747 5.747 10 C 0.147 3.853 11 C -0.099 4.099 12 C -0.085 4.085 13 H 0.091 0.909 14 C -0.119 4.119 15 C 0.078 3.922 16 N -0.609 5.609 17 C 0.576 3.424 18 O -0.576 6.576 19 C -0.188 4.188 20 C 0.172 3.828 21 N -0.486 5.486 22 C 0.127 3.873 23 C -0.147 4.147 24 C -0.140 4.140 25 S 0.166 5.834 26 C -0.233 4.233 27 C -0.018 4.018 28 C 0.108 3.892 29 H 0.252 0.748 30 H 0.375 0.625 31 H 0.018 0.982 32 H 0.013 0.987 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.216 0.784 42 H 0.200 0.800 43 H 0.060 0.940 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -36.387 -0.486 36.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.218 1.218 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.089 0.911 9 N -0.390 5.390 10 C 0.020 3.980 11 C -0.138 4.138 12 C -0.105 4.105 13 H 0.109 0.891 14 C -0.156 4.156 15 C -0.043 4.043 16 N -0.341 5.341 17 C 0.366 3.634 18 O -0.457 6.457 19 C -0.196 4.196 20 C 0.000 4.000 21 N -0.195 5.195 22 C -0.007 4.007 23 C -0.177 4.177 24 C -0.277 4.277 25 S 0.430 5.570 26 C -0.350 4.350 27 C -0.046 4.046 28 C -0.015 4.015 29 H 0.061 0.939 30 H 0.207 0.793 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.188 0.812 40 H 0.183 0.817 41 H 0.233 0.767 42 H 0.216 0.784 43 H 0.078 0.922 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.101 -36.556 -0.675 36.562 hybrid contribution 1.038 1.906 0.938 2.364 sum 1.139 -34.650 0.263 34.670 Atomic orbital electron populations 1.69791 1.06464 1.26209 1.59313 1.25560 0.96477 1.01060 1.03590 0.85225 0.77268 0.79215 0.78140 1.21795 1.20654 1.20344 1.19595 0.91427 0.85648 1.41555 0.91076 1.42577 1.05706 1.01275 1.89441 1.20882 0.94499 0.85317 0.97266 1.21519 0.97504 0.91913 1.02819 1.22218 0.97742 0.94615 0.95933 0.89073 1.22819 0.97584 0.91761 1.03481 1.22910 0.89863 0.97168 0.94348 1.48432 1.31662 1.08045 1.45918 1.17807 0.80413 0.86784 0.78410 1.90800 1.37239 1.69021 1.48622 1.20645 1.02280 0.93067 1.03651 1.22878 0.94638 0.89089 0.93441 1.67689 1.22015 1.06530 1.23216 1.19872 0.92522 0.95231 0.93122 1.19839 1.02646 0.91306 1.03887 1.25966 0.98035 1.05462 0.98238 1.84244 1.37126 0.92945 1.42725 1.23879 1.05496 0.99577 1.06084 1.22771 0.95311 0.91002 0.95534 1.22385 1.00859 0.79534 0.98694 0.93902 0.79268 0.96417 0.96939 0.91738 0.90506 0.89198 0.86736 0.88123 0.88334 0.81250 0.81726 0.76679 0.78407 0.92161 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.45 13.06 21.65 0.28 -59.16 16 2 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 46.85 29.55 68.60 2.03 48.88 16 4 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 7 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.75 -38.41 5.60 -343.45 -1.92 -40.34 16 10 C 0.15 5.78 6.14 86.38 0.53 6.31 16 11 C -0.10 -2.78 4.84 30.59 0.15 -2.63 16 12 C -0.09 -1.77 3.04 -9.40 -0.03 -1.80 16 13 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 14 C -0.12 -1.46 6.42 31.80 0.20 -1.26 16 15 C 0.08 0.94 4.87 86.75 0.42 1.36 16 16 N -0.61 -13.25 3.33 -819.26 -2.73 -15.97 16 17 C 0.58 15.26 7.81 86.70 0.68 15.94 16 18 O -0.58 -20.13 16.62 -4.00 -0.07 -20.20 16 19 C -0.19 -4.10 5.89 -20.03 -0.12 -4.21 16 20 C 0.17 4.04 10.74 85.33 0.92 4.95 16 21 N -0.49 -11.28 10.39 -188.74 -1.96 -13.24 16 22 C 0.13 2.37 6.97 39.70 0.28 2.65 16 23 C -0.15 -1.77 10.16 21.79 0.22 -1.55 16 24 C -0.14 -0.88 11.08 66.76 0.74 -0.14 16 25 S 0.17 1.35 23.29 -56.49 -1.32 0.03 16 26 C -0.23 -3.59 6.49 22.99 0.15 -3.44 16 27 C -0.02 -0.28 8.72 22.88 0.20 -0.08 16 28 C 0.11 2.71 5.74 86.85 0.50 3.20 16 29 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.38 20.14 7.67 -92.71 -0.71 19.43 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.01 0.52 7.59 -2.39 -0.02 0.50 16 33 H 0.06 1.85 8.03 -2.39 -0.02 1.83 16 34 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.09 1.06 8.04 -2.39 -0.02 1.05 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.80 6.74 -2.38 -0.02 0.78 16 38 H 0.10 0.83 6.74 -2.39 -0.02 0.81 16 39 H 0.17 3.95 7.67 -2.91 -0.02 3.93 16 40 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 41 H 0.22 -0.32 8.06 -2.91 -0.02 -0.35 16 42 H 0.20 1.89 2.89 -4.40 -0.01 1.88 16 43 H 0.06 1.82 7.95 -2.39 -0.02 1.80 16 44 H 0.07 1.81 7.95 -2.39 -0.02 1.79 16 Total: -1.00 -78.17 373.65 0.79 -77.38 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.33 Total: 20.71 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 6.14 Total: 1.91 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -6.33 Total: -128.71 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.07 Total: -20.20 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.32 Total: 0.03 kcal Total: -78.17 0.79 -77.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724715895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.269 kcal (2) G-P(sol) polarization free energy of solvation -78.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds