Wall clock time and date at job start Wed Apr 1 2020 03:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29422 * 124.80287 * 2 1 4 4 C 1.30947 * 117.36060 * 180.02562 * 3 2 1 5 5 C 1.35660 * 114.19399 * 359.97438 * 4 3 2 6 6 C 1.46680 * 126.13148 * 180.02562 * 5 4 3 7 7 O 1.21683 * 120.00091 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99703 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72441 * 8 6 5 10 10 C 1.50703 * 109.47138 * 180.28062 * 9 8 6 11 11 C 1.38233 * 119.99680 * 269.72871 * 10 9 8 12 12 C 1.38242 * 120.00138 * 179.74592 * 11 10 9 13 13 C 1.38240 * 119.99332 * 0.52393 * 12 11 10 14 14 C 1.50698 * 119.99569 * 179.77071 * 13 12 11 15 15 C 1.53006 * 109.47180 * 269.97821 * 14 13 12 16 16 N 1.46501 * 109.46927 * 180.02562 * 15 14 13 17 17 C 1.36931 * 119.99750 * 180.02562 * 16 15 14 18 18 H 1.08009 * 120.00438 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00347 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00538 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99499 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47266 * 90.00386 * 21 19 17 23 23 H 1.48503 * 109.46841 * 210.00409 * 21 19 17 24 24 H 1.48503 * 109.47414 * 329.99994 * 21 19 17 25 25 C 1.38233 * 120.00164 * 359.74815 * 13 12 11 26 26 C 1.38231 * 120.00146 * 89.99859 * 10 9 8 27 27 S 1.70948 * 124.80148 * 180.35683 * 2 1 3 28 28 H 1.08999 * 109.47587 * 89.97562 * 1 2 3 29 29 H 1.09001 * 109.47433 * 209.97425 * 1 2 3 30 30 H 1.08999 * 109.46967 * 329.97566 * 1 2 3 31 31 H 1.08003 * 122.90074 * 180.02562 * 4 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 34 34 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 35 35 H 1.08005 * 120.00115 * 359.97438 * 11 10 9 36 36 H 1.07996 * 120.00318 * 180.29591 * 12 11 10 37 37 H 1.08997 * 109.47063 * 29.97982 * 14 13 12 38 38 H 1.08997 * 109.47302 * 149.97950 * 14 13 12 39 39 H 1.08997 * 109.46782 * 300.00288 * 15 14 13 40 40 H 1.08997 * 109.46898 * 59.99881 * 15 14 13 41 41 H 0.96999 * 119.99841 * 359.97438 * 16 15 14 42 42 H 0.96992 * 119.99811 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.00181 * 179.97438 * 25 13 12 44 44 H 1.07994 * 120.00283 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8931 -0.0005 5 6 3.9351 -0.4059 -0.0004 6 6 5.3188 -0.8926 -0.0004 7 8 6.2425 -0.1005 0.0000 8 7 5.5672 -2.2173 0.0002 9 6 6.9491 -2.7035 -0.0059 10 6 6.9515 -4.2105 -0.0108 11 6 6.9622 -4.9055 1.1841 12 6 6.9591 -6.2879 1.1797 13 6 6.9562 -6.9752 -0.0197 14 6 6.9581 -8.4821 -0.0245 15 6 8.4012 -8.9904 -0.0311 16 7 8.4030 -10.4554 -0.0364 17 6 9.5896 -11.1386 -0.0422 18 1 10.5244 -10.5975 -0.0433 19 6 9.5914 -12.5267 -0.0478 20 7 10.7321 -13.1834 -0.0529 21 14 7.9748 -13.4626 -0.0466 22 1 7.5421 -13.7052 -1.4462 23 1 8.1561 -14.7627 0.6479 24 1 6.9410 -12.6642 0.6599 25 6 6.9513 -6.2801 -1.2146 26 6 6.9487 -4.8978 -1.2101 27 16 2.4827 -1.4037 -0.0087 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 4.2433 1.7163 -0.0002 32 1 4.8309 -2.8489 0.0002 33 1 7.4596 -2.3365 -0.8964 34 1 7.4653 -2.3422 0.8836 35 1 6.9692 -4.3684 2.1211 36 1 6.9626 -6.8309 2.1133 37 1 6.4477 -8.8489 0.8660 38 1 6.4417 -8.8433 -0.9138 39 1 8.9115 -8.6235 -0.9216 40 1 8.9176 -8.6293 0.8583 41 1 7.5635 -10.9414 -0.0350 42 1 10.7332 -14.1534 -0.0571 43 1 6.9495 -6.8171 -2.1516 44 1 6.9452 -4.3548 -2.1437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731702423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:52 Heat of formation + Delta-G solvation = 39.087028 kcal Electronic energy + Delta-G solvation = -25150.159547 eV Core-core repulsion = 21387.238962 eV Total energy + Delta-G solvation = -3762.920584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69941 -39.92868 -39.21717 -36.02119 -34.96136 -33.10298 -32.71371 -31.23241 -31.05008 -29.72553 -28.54851 -26.04748 -24.75430 -23.43756 -22.84659 -22.16025 -21.48165 -20.72925 -20.11847 -18.96881 -17.68154 -17.53798 -16.43710 -16.18425 -15.97704 -15.67167 -15.30056 -14.99413 -14.99076 -14.52604 -14.38516 -14.04950 -14.01565 -13.80740 -13.52191 -13.21823 -13.02456 -12.95908 -12.81039 -12.77309 -12.44940 -12.14436 -11.56366 -11.37610 -11.34607 -11.00724 -10.72991 -10.71952 -10.71464 -10.28687 -10.18400 -10.09811 -9.62040 -9.61976 -9.41813 -9.03498 -8.91348 -8.69709 -7.26426 -5.78735 -3.14911 -0.32216 0.57631 0.98743 1.06385 1.30382 1.92351 2.70787 2.71151 3.34911 3.37384 3.43036 3.49437 3.68313 4.26376 4.35476 4.44456 4.56794 4.65005 4.73095 4.77884 4.82333 4.83863 4.89426 5.01686 5.22384 5.32592 5.38415 5.42319 5.52242 5.54088 5.61634 5.64446 5.72845 5.85033 5.90158 5.97037 6.08695 6.30459 6.38745 6.48927 6.67989 6.78625 6.87252 6.90968 7.06550 7.62792 7.97254 8.39982 9.18806 9.90886 10.10553 11.39613 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022601 B = 0.001614 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.572013 B =17347.200590 C =18265.372579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.063 3.937 3 N -0.481 5.481 4 C 0.125 3.875 5 C -0.297 4.297 6 C 0.597 3.403 7 O -0.525 6.525 8 N -0.719 5.719 9 C 0.166 3.834 10 C -0.129 4.129 11 C -0.097 4.097 12 C -0.117 4.117 13 C -0.052 4.052 14 C -0.098 4.098 15 C 0.164 3.836 16 N -0.757 5.757 17 C -0.246 4.246 18 H 0.090 0.910 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.117 4.117 26 C -0.097 4.097 27 S 0.167 5.833 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.189 0.811 32 H 0.400 0.600 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.028 0.972 41 H 0.361 0.639 42 H 0.260 0.740 43 H 0.126 0.874 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.284 28.104 0.109 35.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.212 4.212 3 N -0.195 5.195 4 C -0.033 4.033 5 C -0.421 4.421 6 C 0.382 3.618 7 O -0.402 6.402 8 N -0.370 5.370 9 C 0.044 3.956 10 C -0.129 4.129 11 C -0.116 4.116 12 C -0.135 4.135 13 C -0.053 4.053 14 C -0.136 4.136 15 C 0.037 3.963 16 N -0.403 5.403 17 C -0.376 4.376 18 H 0.108 0.892 19 C -0.192 4.192 20 N -0.582 5.582 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.135 4.135 26 C -0.116 4.116 27 S 0.422 5.578 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.206 0.794 32 H 0.235 0.765 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.144 0.856 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.850 28.026 0.105 35.537 hybrid contribution -0.705 -0.448 0.003 0.835 sum -22.555 27.578 0.108 35.627 Atomic orbital electron populations 1.20577 0.84493 1.04856 1.04504 1.27555 1.02381 0.90959 1.00298 1.66257 1.04802 1.31140 1.17346 1.22223 0.90754 0.95548 0.94779 1.25746 0.97882 0.97922 1.20547 1.16704 0.86036 0.82491 0.76611 1.90864 1.44257 1.55144 1.49983 1.46031 1.09556 1.06116 1.75317 1.20236 0.81991 0.89914 1.03506 1.19689 1.05349 0.93980 0.93904 1.21031 0.99057 0.94222 0.97245 1.21126 1.00449 0.93875 0.98078 1.20029 0.96162 0.96062 0.93023 1.20917 0.99610 0.89997 1.03057 1.20570 0.92043 0.84711 0.98941 1.42715 1.05381 1.00910 1.91294 1.19067 0.85797 0.89600 1.43116 0.89211 1.24685 0.96375 0.96118 1.01993 1.69704 1.23881 1.07068 1.57497 0.86528 0.84351 0.79739 0.77778 1.21050 1.21679 1.20353 1.21121 1.00456 0.93826 0.98120 1.21026 0.99078 0.94273 0.97194 1.83996 0.96533 1.11402 1.65830 0.88894 0.89545 0.88694 0.79371 0.76519 0.90197 0.90184 0.86042 0.85613 0.90818 0.90807 0.95352 0.95406 0.80672 0.93032 0.85605 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.46 36.01 0.38 0.14 16 2 C 0.06 0.39 7.38 -13.29 -0.10 0.29 16 3 N -0.48 -4.11 10.51 -11.50 -0.12 -4.23 16 4 C 0.12 1.08 11.09 -18.85 -0.21 0.87 16 5 C -0.30 -2.52 6.48 -37.10 -0.24 -2.76 16 6 C 0.60 5.99 7.79 -12.85 -0.10 5.89 16 7 O -0.52 -6.94 16.87 5.20 0.09 -6.85 16 8 N -0.72 -5.93 5.54 -62.80 -0.35 -6.28 16 9 C 0.17 1.44 5.80 -5.19 -0.03 1.41 16 10 C -0.13 -1.20 5.25 -104.62 -0.55 -1.75 16 11 C -0.10 -0.95 9.70 -39.58 -0.38 -1.33 16 12 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 13 C -0.05 -0.65 5.13 -104.62 -0.54 -1.18 16 14 C -0.10 -1.42 5.46 -27.88 -0.15 -1.57 16 15 C 0.16 3.13 6.24 -4.04 -0.03 3.11 16 16 N -0.76 -17.96 5.41 -59.91 -0.32 -18.28 16 17 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 18 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 20 N -0.93 -29.38 13.97 55.49 0.78 -28.60 16 21 Si 0.89 21.92 27.74 -169.99 -4.71 17.21 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 25 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 26 C -0.10 -0.95 9.70 -39.58 -0.38 -1.33 16 27 S 0.17 0.96 22.31 -107.50 -2.40 -1.44 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.19 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.40 2.71 7.65 -40.82 -0.31 2.40 16 33 H 0.08 0.71 8.09 -51.92 -0.42 0.29 16 34 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 35 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 38 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.36 8.23 5.53 -40.82 -0.23 8.00 16 42 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 43 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -34.87 391.82 -10.53 -45.40 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.04 Total: 5.94 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -3.35 Total: -8.77 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.02 Total: -57.40 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: 0.09 Total: -6.85 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.40 Total: -1.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.87 -10.53 -45.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731702423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.487 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds