Wall clock time and date at job start Wed Apr 1 2020 03:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28055 * 124.24219 * 2 1 4 4 C 1.34412 * 117.91904 * 179.97438 * 3 2 1 5 5 C 1.41249 * 129.48204 * 180.02562 * 4 3 2 6 6 C 1.35754 * 120.62923 * 180.02562 * 5 4 3 7 7 C 1.40189 * 120.62087 * 359.97438 * 6 5 4 8 8 C 1.47594 * 120.13123 * 179.97438 * 7 6 5 9 9 O 1.21586 * 120.00516 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99277 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99717 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47202 * 179.97438 * 11 10 8 13 13 N 1.46503 * 109.46911 * 179.97438 * 12 11 10 14 14 C 1.36930 * 119.99969 * 269.99775 * 13 12 11 15 15 H 1.08006 * 119.99757 * 140.53302 * 14 13 12 16 16 C 1.38807 * 120.00205 * 320.53766 * 14 13 12 17 17 N 1.31612 * 120.00335 * 340.28400 * 16 14 13 18 18 Si 1.86807 * 120.00032 * 160.28563 * 16 14 13 19 19 H 1.48501 * 109.46855 * 60.00127 * 18 16 14 20 20 H 1.48504 * 109.47261 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47146 * 300.00108 * 18 16 14 22 22 C 1.46497 * 119.99331 * 90.00209 * 13 12 11 23 23 C 1.53010 * 117.49191 * 183.28494 * 22 13 12 24 24 C 1.53003 * 59.99957 * 252.51124 * 23 22 13 25 25 C 1.39186 * 119.74770 * 0.23748 * 7 6 5 26 26 C 1.38913 * 119.84039 * 359.51627 * 25 7 6 27 27 S 1.70647 * 124.24131 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47133 * 90.02526 * 1 2 3 29 29 H 1.09003 * 109.46680 * 210.02019 * 1 2 3 30 30 H 1.08999 * 109.47291 * 330.02007 * 1 2 3 31 31 H 1.07991 * 119.68446 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.68866 * 179.97438 * 6 5 4 33 33 H 0.97002 * 120.00266 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47176 * 59.98956 * 11 10 8 35 35 H 1.08999 * 109.46764 * 299.99341 * 11 10 8 36 36 H 1.09001 * 109.46669 * 59.99857 * 12 11 10 37 37 H 1.08996 * 109.46934 * 300.00078 * 12 11 10 38 38 H 0.97000 * 120.00354 * 175.00740 * 17 16 14 39 39 H 1.08995 * 115.55377 * 328.98912 * 22 13 12 40 40 H 1.08990 * 117.50193 * 0.02562 * 23 22 13 41 41 H 1.09008 * 117.49268 * 145.02347 * 23 22 13 42 42 H 1.09004 * 117.49896 * 252.51715 * 24 23 22 43 43 H 1.08992 * 117.51607 * 107.48005 * 24 23 22 44 44 H 1.07995 * 120.07759 * 179.71726 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9106 0.0005 5 6 4.5762 1.8952 0.0011 6 6 5.8864 1.5398 0.0011 7 6 6.2597 0.1886 0.0010 8 6 7.6875 -0.1856 0.0004 9 8 8.0087 -1.3583 -0.0002 10 7 8.6352 0.7727 0.0004 11 6 10.0524 0.4014 -0.0007 12 6 10.9113 1.6676 -0.0010 13 7 12.3285 1.2962 -0.0016 14 6 12.9913 1.1226 1.1840 15 1 13.7067 0.3205 1.2903 16 6 12.7436 1.9775 2.2492 17 7 12.1959 3.1548 2.0346 18 14 13.1877 1.4568 3.9874 19 1 14.6475 1.1964 4.0683 20 1 12.8253 2.5400 4.9365 21 1 12.4440 0.2205 4.3391 22 6 13.0364 1.1106 -1.2707 23 6 14.4936 0.6483 -1.2056 24 6 14.1652 2.0898 -1.5997 25 6 5.2789 -0.7989 -0.0041 26 6 3.9369 -0.4402 0.0012 27 16 2.4672 -1.4107 0.0006 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5135 31 1 4.3056 2.9407 0.0008 32 1 6.6483 2.3053 0.0012 33 1 8.3789 1.7083 0.0005 34 1 10.2730 -0.1873 -0.8912 35 1 10.2741 -0.1882 0.8888 36 1 10.6907 2.2564 0.8893 37 1 10.6894 2.2569 -0.8907 38 1 11.9563 3.7221 2.7840 39 1 12.4290 0.7460 -2.0990 40 1 14.9252 0.4819 -0.2187 41 1 14.8449 -0.0206 -1.9913 42 1 14.3004 2.3692 -2.6446 43 1 14.3806 2.8723 -0.8721 44 1 5.5605 -1.8415 -0.0088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753161231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:28 Heat of formation + Delta-G solvation = 68.590577 kcal Electronic energy + Delta-G solvation = -26319.416826 eV Core-core repulsion = 22557.775611 eV Total energy + Delta-G solvation = -3761.641214 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.82734 -39.40262 -37.21406 -36.87987 -34.87379 -33.29302 -32.09100 -31.43828 -30.85858 -29.05466 -27.37315 -24.70665 -24.41791 -23.23581 -21.75104 -21.59430 -21.27379 -20.31168 -19.79038 -18.91123 -17.66113 -16.33313 -16.20584 -16.04188 -15.57089 -15.48830 -15.16346 -14.90474 -14.60899 -14.22502 -14.06324 -13.94889 -13.63608 -13.48637 -13.35468 -12.83978 -12.71125 -12.66837 -12.56120 -11.95743 -11.70669 -11.55544 -11.17939 -11.06338 -10.78908 -10.73673 -10.49351 -10.37715 -10.19200 -10.00150 -9.93781 -9.78601 -9.64653 -9.30838 -8.96914 -8.64870 -8.53263 -8.40087 -6.62937 -5.88051 -3.54685 -0.13076 0.86044 0.86879 1.35160 1.74154 2.93441 3.30713 3.37752 3.38170 3.42156 3.47756 3.66797 4.26648 4.38820 4.55460 4.68280 4.80850 4.85576 4.91764 4.95643 4.98352 5.18590 5.24753 5.27992 5.41263 5.51923 5.77574 5.85531 5.88868 5.96758 6.01931 6.05202 6.17610 6.24130 6.30487 6.46134 6.48958 6.59090 6.75580 6.93145 7.04291 7.21567 7.24964 7.42842 7.73069 7.78166 8.39755 8.42787 9.05603 9.66110 10.24054 11.07524 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.002141 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.508563 B =13073.927859 C =13599.669823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.092 3.908 3 N -0.471 5.471 4 C 0.102 3.898 5 C -0.070 4.070 6 C -0.075 4.075 7 C -0.111 4.111 8 C 0.552 3.448 9 O -0.540 6.540 10 N -0.711 5.711 11 C 0.097 3.903 12 C 0.141 3.859 13 N -0.546 5.546 14 C -0.262 4.262 15 H 0.065 0.935 16 C 0.016 3.984 17 N -0.883 5.883 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.118 3.882 23 C -0.194 4.194 24 C -0.219 4.219 25 C -0.008 4.008 26 C -0.195 4.195 27 S 0.109 5.891 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.398 0.602 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.033 0.967 38 H 0.256 0.744 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.531 -3.795 -5.667 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.192 4.192 3 N -0.186 5.186 4 C -0.019 4.019 5 C -0.091 4.091 6 C -0.096 4.096 7 C -0.118 4.118 8 C 0.338 3.662 9 O -0.419 6.419 10 N -0.361 5.361 11 C -0.028 4.028 12 C 0.014 3.986 13 N -0.263 5.263 14 C -0.392 4.392 15 H 0.083 0.917 16 C -0.185 4.185 17 N -0.524 5.524 18 Si 0.725 3.275 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.206 1.206 22 C 0.010 3.990 23 C -0.233 4.233 24 C -0.260 4.260 25 C -0.031 4.031 26 C -0.313 4.313 27 S 0.365 5.635 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.233 0.767 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.822 -5.003 -5.528 23.061 hybrid contribution 0.796 0.995 0.939 1.583 sum -21.026 -4.008 -4.589 21.891 Atomic orbital electron populations 1.20586 0.84680 1.04687 1.04392 1.26846 1.01930 0.90997 0.99460 1.66148 1.04152 1.31310 1.16967 1.19310 0.89115 0.91721 1.01776 1.20280 0.90125 0.98721 0.99991 1.20912 0.96188 0.95384 0.97156 1.20034 0.93767 0.93567 1.04415 1.18009 0.84843 0.85924 0.77412 1.90781 1.82765 1.18072 1.50298 1.46024 1.07546 1.09177 1.73371 1.22429 0.77127 1.01516 1.01683 1.21015 0.82971 0.92303 1.02340 1.43142 1.03881 1.79241 1.00018 1.19004 1.22852 1.08525 0.88795 0.91710 1.25242 1.00011 0.93719 0.99484 1.70036 1.44506 1.07357 1.30543 0.86473 0.78733 0.77904 0.84342 1.20529 1.21515 1.20647 1.21254 0.87234 1.00323 0.90227 1.23026 1.00901 0.97187 1.02140 1.23342 1.09516 0.93524 0.99610 1.20427 0.88083 1.00603 0.94015 1.23726 0.98779 0.96726 1.12086 1.83990 0.95384 1.10202 1.73903 0.89016 0.89614 0.88853 0.84066 0.83946 0.76746 0.92789 0.91256 0.88305 0.94833 0.93419 0.89513 0.88405 0.90739 0.91231 0.88925 0.83701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.44 36.01 0.38 -0.04 16 2 C 0.09 0.84 7.29 -13.85 -0.10 0.74 16 3 N -0.47 -5.55 10.56 -8.96 -0.09 -5.64 16 4 C 0.10 1.26 7.00 -84.88 -0.59 0.66 16 5 C -0.07 -0.76 10.03 -39.33 -0.39 -1.16 16 6 C -0.07 -0.82 9.44 -39.74 -0.38 -1.20 16 7 C -0.11 -1.49 5.87 -105.00 -0.62 -2.10 16 8 C 0.55 9.10 7.76 -12.44 -0.10 9.00 16 9 O -0.54 -10.82 16.34 5.29 0.09 -10.74 16 10 N -0.71 -11.29 5.51 -61.32 -0.34 -11.63 16 11 C 0.10 1.88 6.00 -4.04 -0.02 1.85 16 12 C 0.14 2.98 5.45 -4.04 -0.02 2.96 16 13 N -0.55 -12.81 2.75 -165.66 -0.46 -13.27 16 14 C -0.26 -6.79 8.47 -15.06 -0.13 -6.91 16 15 H 0.07 1.70 6.75 -52.48 -0.35 1.35 16 16 C 0.02 0.43 4.98 -17.44 -0.09 0.35 16 17 N -0.88 -23.83 11.50 55.49 0.64 -23.19 16 18 Si 0.90 20.94 29.60 -169.99 -5.03 15.91 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.12 2.46 6.57 -67.92 -0.45 2.02 16 23 C -0.19 -3.79 9.80 -26.72 -0.26 -4.05 16 24 C -0.22 -4.38 10.36 -26.73 -0.28 -4.66 16 25 C -0.01 -0.11 9.62 -38.98 -0.37 -0.48 16 26 C -0.19 -2.36 6.54 -38.62 -0.25 -2.62 16 27 S 0.11 1.02 23.11 -107.50 -2.48 -1.47 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.14 1.24 6.38 -52.49 -0.33 0.90 16 33 H 0.40 5.20 6.49 -40.82 -0.26 4.93 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.10 2.34 5.59 -51.93 -0.29 2.04 16 37 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 38 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 39 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.10 2.08 6.46 -51.93 -0.34 1.75 16 41 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 44 H 0.15 1.86 7.64 -52.49 -0.40 1.46 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -31.34 383.32 -11.34 -42.68 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.76 Total: 7.21 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -3.67 Total: -5.64 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.25 Total: -53.73 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.48 Total: -1.47 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.34 -11.34 -42.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753161231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.267 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds