Wall clock time and date at job start Wed Apr 1 2020 03:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28055 * 124.24219 * 2 1 4 4 C 1.34412 * 117.91904 * 179.97438 * 3 2 1 5 5 C 1.41249 * 129.48204 * 180.02562 * 4 3 2 6 6 C 1.35754 * 120.62923 * 180.02562 * 5 4 3 7 7 C 1.40189 * 120.62087 * 359.97438 * 6 5 4 8 8 C 1.47594 * 120.13123 * 179.97438 * 7 6 5 9 9 O 1.21586 * 120.00516 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99277 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99717 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47202 * 179.97438 * 11 10 8 13 13 N 1.46503 * 109.46911 * 179.97438 * 12 11 10 14 14 C 1.36930 * 119.99969 * 269.99775 * 13 12 11 15 15 H 1.08006 * 119.99757 * 140.53302 * 14 13 12 16 16 C 1.38807 * 120.00205 * 320.53766 * 14 13 12 17 17 N 1.31612 * 120.00335 * 340.28400 * 16 14 13 18 18 Si 1.86807 * 120.00032 * 160.28563 * 16 14 13 19 19 H 1.48501 * 109.46855 * 60.00127 * 18 16 14 20 20 H 1.48504 * 109.47261 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47146 * 300.00108 * 18 16 14 22 22 C 1.46497 * 119.99331 * 90.00209 * 13 12 11 23 23 C 1.53010 * 117.49191 * 183.28494 * 22 13 12 24 24 C 1.53003 * 59.99957 * 252.51124 * 23 22 13 25 25 C 1.39186 * 119.74770 * 0.23748 * 7 6 5 26 26 C 1.38913 * 119.84039 * 359.51627 * 25 7 6 27 27 S 1.70647 * 124.24131 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47133 * 90.02526 * 1 2 3 29 29 H 1.09003 * 109.46680 * 210.02019 * 1 2 3 30 30 H 1.08999 * 109.47291 * 330.02007 * 1 2 3 31 31 H 1.07991 * 119.68446 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.68866 * 179.97438 * 6 5 4 33 33 H 0.97002 * 120.00266 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47176 * 59.98956 * 11 10 8 35 35 H 1.08999 * 109.46764 * 299.99341 * 11 10 8 36 36 H 1.09001 * 109.46669 * 59.99857 * 12 11 10 37 37 H 1.08996 * 109.46934 * 300.00078 * 12 11 10 38 38 H 0.97000 * 120.00354 * 175.00740 * 17 16 14 39 39 H 1.08995 * 115.55377 * 328.98912 * 22 13 12 40 40 H 1.08990 * 117.50193 * 0.02562 * 23 22 13 41 41 H 1.09008 * 117.49268 * 145.02347 * 23 22 13 42 42 H 1.09004 * 117.49896 * 252.51715 * 24 23 22 43 43 H 1.08992 * 117.51607 * 107.48005 * 24 23 22 44 44 H 1.07995 * 120.07759 * 179.71726 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9106 0.0005 5 6 4.5762 1.8952 0.0011 6 6 5.8864 1.5398 0.0011 7 6 6.2597 0.1886 0.0010 8 6 7.6875 -0.1856 0.0004 9 8 8.0087 -1.3583 -0.0002 10 7 8.6352 0.7727 0.0004 11 6 10.0524 0.4014 -0.0007 12 6 10.9113 1.6676 -0.0010 13 7 12.3285 1.2962 -0.0016 14 6 12.9913 1.1226 1.1840 15 1 13.7067 0.3205 1.2903 16 6 12.7436 1.9775 2.2492 17 7 12.1959 3.1548 2.0346 18 14 13.1877 1.4568 3.9874 19 1 14.6475 1.1964 4.0683 20 1 12.8253 2.5400 4.9365 21 1 12.4440 0.2205 4.3391 22 6 13.0364 1.1106 -1.2707 23 6 14.4936 0.6483 -1.2056 24 6 14.1652 2.0898 -1.5997 25 6 5.2789 -0.7989 -0.0041 26 6 3.9369 -0.4402 0.0012 27 16 2.4672 -1.4107 0.0006 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5135 31 1 4.3056 2.9407 0.0008 32 1 6.6483 2.3053 0.0012 33 1 8.3789 1.7083 0.0005 34 1 10.2730 -0.1873 -0.8912 35 1 10.2741 -0.1882 0.8888 36 1 10.6907 2.2564 0.8893 37 1 10.6894 2.2569 -0.8907 38 1 11.9563 3.7221 2.7840 39 1 12.4290 0.7460 -2.0990 40 1 14.9252 0.4819 -0.2187 41 1 14.8449 -0.0206 -1.9913 42 1 14.3004 2.3692 -2.6446 43 1 14.3806 2.8723 -0.8721 44 1 5.5605 -1.8415 -0.0088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753161231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:27 Heat of formation + Delta-G solvation = 50.218796 kcal Electronic energy + Delta-G solvation = -26320.213486 eV Core-core repulsion = 22557.775611 eV Total energy + Delta-G solvation = -3762.437875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.76539 -40.61786 -38.83718 -37.88648 -36.38923 -35.01950 -33.06494 -32.46388 -32.30671 -30.14094 -28.78402 -26.35572 -25.38593 -24.40567 -23.25946 -22.84331 -22.48680 -21.58531 -21.39552 -19.85192 -18.80779 -18.03812 -17.44916 -17.22608 -16.94876 -16.55951 -16.48560 -16.16805 -16.11640 -15.66193 -15.23687 -15.06859 -14.54808 -14.49577 -14.35030 -14.22286 -13.96880 -13.79877 -13.58965 -13.26568 -13.11703 -12.91887 -12.64353 -12.51362 -12.46723 -12.14749 -12.02068 -11.93214 -11.68259 -11.35093 -11.33012 -11.22030 -10.89885 -10.78042 -10.50886 -10.17202 -9.74630 -9.26576 -8.52836 -7.83079 -5.53753 -1.01110 -0.02127 0.08079 0.56366 0.82464 1.43631 1.46833 1.52524 1.85003 2.05724 2.48499 2.62620 2.77706 3.14676 3.39881 3.42658 3.47886 3.68585 3.85394 3.96708 4.02536 4.22939 4.31423 4.37084 4.41155 4.52369 4.57424 4.61675 4.65289 4.67856 4.79496 4.86692 4.95919 4.97161 5.05101 5.06680 5.13505 5.21274 5.29877 5.40848 5.45819 5.56932 5.65442 5.73430 6.43597 6.45801 6.50852 7.10126 7.15217 7.79289 8.31397 9.07274 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.002141 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.508563 B =13073.927859 C =13599.669823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.100 3.900 3 N -0.500 5.500 4 C 0.095 3.905 5 C -0.073 4.073 6 C -0.066 4.066 7 C -0.129 4.129 8 C 0.555 3.445 9 O -0.583 6.583 10 N -0.702 5.702 11 C 0.119 3.881 12 C 0.148 3.852 13 N -0.564 5.564 14 C -0.266 4.266 15 H 0.055 0.945 16 C -0.025 4.025 17 N -0.905 5.905 18 Si 0.947 3.053 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.099 3.901 23 C -0.185 4.185 24 C -0.211 4.211 25 C -0.011 4.011 26 C -0.221 4.221 27 S 0.140 5.860 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.413 0.587 34 H 0.052 0.948 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.254 0.746 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.504 -3.682 -6.662 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.183 4.183 3 N -0.216 5.216 4 C -0.026 4.026 5 C -0.093 4.093 6 C -0.088 4.088 7 C -0.135 4.135 8 C 0.343 3.657 9 O -0.464 6.464 10 N -0.353 5.353 11 C -0.007 4.007 12 C 0.021 3.979 13 N -0.281 5.281 14 C -0.396 4.396 15 H 0.073 0.927 16 C -0.224 4.224 17 N -0.548 5.548 18 Si 0.775 3.225 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.009 4.009 23 C -0.223 4.223 24 C -0.252 4.252 25 C -0.034 4.034 26 C -0.340 4.340 27 S 0.397 5.603 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.181 0.819 32 H 0.182 0.818 33 H 0.251 0.749 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.075 0.925 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -23.805 -4.879 -6.535 25.163 hybrid contribution 1.266 0.899 1.191 1.957 sum -22.539 -3.980 -5.344 23.504 Atomic orbital electron populations 1.20849 0.81589 1.06106 1.05970 1.27674 1.03636 0.90395 0.96594 1.66253 1.03868 1.32321 1.19126 1.19686 0.89925 0.92052 1.00985 1.20544 0.89687 0.99682 0.99421 1.21066 0.96969 0.94590 0.96135 1.19770 0.91676 0.94959 1.07134 1.18422 0.86045 0.85183 0.76060 1.90750 1.83616 1.19782 1.52289 1.45811 1.06186 1.10116 1.73213 1.21917 0.78786 1.00035 0.99945 1.20889 0.82395 0.92687 1.01882 1.43337 1.04868 1.79516 1.00394 1.19098 1.22466 1.07893 0.90143 0.92739 1.25774 1.00698 0.93910 1.02000 1.70120 1.45805 1.07972 1.30919 0.85677 0.78358 0.77198 0.81223 1.20303 1.21490 1.21011 1.21562 0.88047 1.01387 0.89889 1.23034 0.99708 0.97526 1.02033 1.23244 1.08793 0.92704 1.00472 1.20403 0.88741 1.00241 0.94035 1.23914 0.99312 0.97789 1.12965 1.83876 0.93673 1.09590 1.73182 0.87135 0.87316 0.88253 0.81860 0.81774 0.74950 0.92964 0.94573 0.90630 0.93181 0.93718 0.87020 0.90792 0.87281 0.87940 0.92452 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 10.44 71.24 0.74 0.17 16 2 C 0.10 1.62 7.29 88.66 0.65 2.27 16 3 N -0.50 -10.93 10.56 -182.20 -1.92 -12.85 16 4 C 0.10 2.24 7.00 39.95 0.28 2.52 16 5 C -0.07 -1.48 10.03 22.43 0.23 -1.25 16 6 C -0.07 -1.38 9.44 22.17 0.21 -1.17 16 7 C -0.13 -3.46 5.87 -20.11 -0.12 -3.58 16 8 C 0.55 18.61 7.76 86.71 0.67 19.28 16 9 O -0.58 -24.15 16.34 -3.99 -0.07 -24.21 16 10 N -0.70 -22.37 5.51 -466.19 -2.57 -24.94 16 11 C 0.12 4.67 6.00 86.38 0.52 5.19 16 12 C 0.15 6.30 5.45 86.38 0.47 6.77 16 13 N -0.56 -26.62 2.75 -678.02 -1.86 -28.48 16 14 C -0.27 -14.00 8.47 84.03 0.71 -13.29 16 15 H 0.06 2.93 6.75 -2.91 -0.02 2.92 16 16 C -0.03 -1.35 4.98 84.86 0.42 -0.92 16 17 N -0.91 -49.69 11.50 21.65 0.25 -49.44 16 18 Si 0.95 43.82 29.60 68.60 2.03 45.85 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 22 C 0.10 4.01 6.57 45.00 0.30 4.30 16 23 C -0.18 -6.96 9.80 30.60 0.30 -6.66 16 24 C -0.21 -8.18 10.36 30.60 0.32 -7.87 16 25 C -0.01 -0.29 9.62 22.66 0.22 -0.08 16 26 C -0.22 -5.25 6.54 22.89 0.15 -5.10 16 27 S 0.14 2.39 23.11 -56.49 -1.31 1.09 16 28 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.16 2.51 8.06 -2.92 -0.02 2.49 16 32 H 0.16 2.56 6.38 -2.91 -0.02 2.54 16 33 H 0.41 10.52 6.49 -92.71 -0.60 9.92 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 3.63 5.59 -2.39 -0.01 3.62 16 37 H 0.05 1.93 8.07 -2.39 -0.02 1.91 16 38 H 0.25 13.51 8.32 -92.71 -0.77 12.74 16 39 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 40 H 0.07 3.15 6.46 -2.39 -0.02 3.14 16 41 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 42 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 43 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.14 3.71 7.64 -2.91 -0.02 3.68 16 Total: -1.00 -69.38 383.32 1.06 -68.32 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.44 Total: 24.08 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 6.06 Total: 0.57 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -6.10 Total: -115.71 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.07 Total: -24.21 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.31 Total: 1.09 kcal Total: -69.38 1.06 -68.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753161231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.544 kcal (2) G-P(sol) polarization free energy of solvation -69.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds