Wall clock time and date at job start Wed Apr 1 2020 03:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38262 * 119.99880 * 265.00270 * 3 2 1 5 5 C 1.38207 * 119.99901 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.00007 * 359.97438 * 5 4 3 7 7 C 1.38205 * 120.00194 * 359.95451 * 6 5 4 8 8 C 1.38210 * 119.99959 * 84.73029 * 3 2 1 9 9 C 1.50699 * 120.00166 * 359.97438 * 8 3 2 10 10 H 1.08999 * 109.47290 * 325.00380 * 9 8 3 11 11 C 1.53004 * 109.46691 * 85.00539 * 9 8 3 12 12 N 1.46503 * 109.46952 * 175.00076 * 11 9 8 13 13 C 1.34784 * 119.99706 * 179.97438 * 12 11 9 14 14 O 1.21571 * 120.00026 * 359.97438 * 13 12 11 15 15 C 1.47689 * 119.99523 * 180.02562 * 13 12 11 16 16 C 1.39492 * 122.10068 * 179.74169 * 15 13 12 17 17 C 1.35004 * 111.68004 * 179.78164 * 16 15 13 18 18 S 1.71758 * 105.45354 * 0.43152 * 17 16 15 19 19 N 1.30606 * 122.10534 * 0.02562 * 15 13 12 20 20 N 1.46496 * 109.47299 * 205.00011 * 9 8 3 21 21 C 1.36941 * 120.00039 * 85.00432 * 20 9 8 22 22 H 1.08003 * 119.99785 * 0.02562 * 21 20 9 23 23 C 1.38805 * 120.00347 * 179.97438 * 21 20 9 24 24 N 1.31625 * 120.00174 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00112 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47233 * 90.00192 * 25 23 21 27 27 H 1.48507 * 109.47063 * 210.00252 * 25 23 21 28 28 H 1.48505 * 109.47104 * 329.99786 * 25 23 21 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 1.07997 * 119.99789 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00136 * 179.97438 * 5 4 3 36 36 H 1.07998 * 119.99690 * 179.97438 * 6 5 4 37 37 H 1.07996 * 120.00611 * 180.02562 * 7 6 5 38 38 H 1.09004 * 109.46623 * 294.99626 * 11 9 8 39 39 H 1.08994 * 109.47731 * 54.99949 * 11 9 8 40 40 H 0.96996 * 119.99992 * 0.02562 * 12 11 9 41 41 H 1.07991 * 124.15426 * 359.97438 * 16 15 13 42 42 H 1.08005 * 127.27105 * 180.16486 * 17 16 15 43 43 H 0.96999 * 120.00477 * 265.00144 * 20 9 8 44 44 H 0.96996 * 120.00283 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3610 2.0379 -1.1928 5 6 2.8222 3.3407 -1.1928 6 6 2.9543 4.0273 0.0000 7 6 2.6243 3.4110 1.1923 8 6 2.1590 2.1090 1.1919 9 6 1.7943 1.4388 2.4914 10 1 0.9464 0.7728 2.3314 11 6 2.9890 0.6301 3.0009 12 7 2.6766 0.0762 4.3207 13 6 3.5875 -0.6774 4.9681 14 8 4.6681 -0.8978 4.4566 15 6 3.2723 -1.2361 6.2984 16 6 4.1798 -2.0257 7.0047 17 6 3.6780 -2.4190 8.1947 18 16 2.0997 -1.7458 8.2709 19 7 2.1245 -1.0266 6.8851 20 7 1.4356 2.4567 3.4820 21 6 0.1578 2.9470 3.5281 22 1 -0.5856 2.5829 2.8344 23 6 -0.1823 3.9110 4.4671 24 7 0.7235 4.3544 5.3129 25 14 -1.9256 4.5793 4.5303 26 1 -2.7407 3.7493 5.4532 27 1 -1.9006 5.9820 5.0173 28 1 -2.5212 4.5380 3.1706 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.2582 1.5014 -2.1245 35 1 3.0794 3.8226 -2.1245 36 1 3.3150 5.0452 0.0000 37 1 2.7270 3.9474 2.1240 38 1 3.2000 -0.1831 2.3063 39 1 3.8615 1.2790 3.0765 40 1 1.8140 0.2512 4.7283 41 1 5.1639 -2.2875 6.6451 42 1 4.1646 -3.0315 8.9394 43 1 2.1031 2.7834 4.1054 44 1 0.4860 5.0283 5.9688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754784947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:35 Heat of formation + Delta-G solvation = 39.738034 kcal Electronic energy + Delta-G solvation = -27708.188542 eV Core-core repulsion = 23945.296187 eV Total energy + Delta-G solvation = -3762.892355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.28084 -39.36647 -38.07928 -35.88952 -33.85204 -33.64660 -31.97331 -31.40838 -29.54887 -28.98889 -27.98887 -26.06590 -23.92616 -23.34910 -22.87808 -21.42213 -20.46472 -20.08058 -19.59739 -18.30103 -17.73450 -17.19344 -16.03992 -15.73070 -15.52132 -15.27662 -14.73042 -14.51776 -14.25779 -14.10085 -13.53883 -13.38096 -13.34738 -13.21382 -13.20277 -12.89487 -12.79197 -12.55117 -12.15113 -11.75948 -11.45349 -11.27569 -11.17532 -11.07932 -10.94306 -10.85964 -10.76000 -10.43724 -10.28103 -10.11558 -9.92590 -9.81094 -9.73221 -9.04976 -8.92247 -8.61530 -8.22827 -8.05781 -7.10777 -5.83935 -3.15373 0.59636 1.41939 1.80248 1.81076 1.86482 1.97447 3.38915 3.41702 3.45992 3.46563 3.48907 4.29414 4.52210 4.69088 5.03263 5.10935 5.21503 5.25317 5.33234 5.45345 5.47685 5.51128 5.51980 5.60737 5.63552 5.71773 5.73267 5.86441 5.90236 6.00679 6.07793 6.09447 6.23054 6.32001 6.36701 6.42524 6.51651 6.63028 6.72403 6.78004 6.98934 7.12078 7.34673 7.59004 7.66477 7.87818 8.31867 8.44082 9.44967 9.94872 10.31470 11.37374 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008373 B = 0.004031 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3343.382059 B = 6945.052068 C = 9058.238826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.130 4.130 5 C -0.131 4.131 6 C -0.134 4.134 7 C -0.077 4.077 8 C -0.083 4.083 9 C 0.196 3.804 10 H 0.071 0.929 11 C 0.118 3.882 12 N -0.691 5.691 13 C 0.587 3.413 14 O -0.543 6.543 15 C 0.051 3.949 16 C -0.134 4.134 17 C -0.291 4.291 18 S 0.464 5.536 19 N -0.505 5.505 20 N -0.714 5.714 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.005 4.005 24 N -0.927 5.927 25 Si 0.904 3.096 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.420 0.580 41 H 0.170 0.830 42 H 0.184 0.816 43 H 0.387 0.613 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 -12.802 -0.771 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.152 4.152 7 C -0.095 4.095 8 C -0.086 4.086 9 C 0.085 3.915 10 H 0.089 0.911 11 C -0.006 4.006 12 N -0.343 5.343 13 C 0.368 3.632 14 O -0.421 6.421 15 C -0.124 4.124 16 C -0.167 4.167 17 C -0.440 4.440 18 S 0.618 5.382 19 N -0.339 5.339 20 N -0.355 5.355 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.201 4.201 24 N -0.575 5.575 25 Si 0.735 3.265 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.149 0.851 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.258 0.742 41 H 0.188 0.812 42 H 0.202 0.798 43 H 0.221 0.779 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.134 -12.331 -0.496 12.733 hybrid contribution 0.608 0.550 -0.418 0.920 sum 3.742 -11.781 -0.914 12.395 Atomic orbital electron populations 1.21762 0.94912 1.01187 1.02655 1.20551 0.96194 0.93190 1.02273 1.19723 0.99932 0.95942 0.92930 1.20831 1.01688 0.95316 0.96941 1.20961 1.01378 0.94969 0.97567 1.21113 1.01616 0.99564 0.92881 1.21148 0.95513 0.94519 0.98307 1.20811 0.97327 0.95006 0.95495 1.19501 0.94261 0.90666 0.87029 0.91115 1.21694 0.98787 0.97140 0.83023 1.45844 1.19236 1.49652 1.19531 1.17216 0.84256 0.78921 0.82853 1.90770 1.23306 1.60852 1.67135 1.21252 0.89935 1.02442 0.98729 1.21395 1.02535 0.98989 0.93795 1.27193 1.05019 1.09118 1.02688 1.80559 1.09817 1.34057 1.13754 1.72376 1.25552 1.24729 1.11273 1.42437 1.10891 1.45305 1.36884 1.19142 0.87158 1.17258 1.13613 0.91167 1.24700 0.97572 0.99499 0.98359 1.69657 1.32654 1.33162 1.21981 0.86250 0.84553 0.78173 0.77555 1.21695 1.21824 1.20758 0.92898 0.91718 0.92897 0.90987 0.91736 0.87122 0.87162 0.86947 0.85067 0.91174 0.91285 0.74201 0.81233 0.79819 0.77861 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.72 37.16 0.36 -1.62 16 2 C -0.08 -1.15 5.38 -27.88 -0.15 -1.30 16 3 C -0.08 -1.35 5.13 -104.62 -0.54 -1.89 16 4 C -0.13 -1.94 9.68 -39.58 -0.38 -2.32 16 5 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 6 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 7 C -0.08 -1.46 9.32 -39.58 -0.37 -1.83 16 8 C -0.08 -1.51 5.02 -104.62 -0.53 -2.03 16 9 C 0.20 3.69 1.97 -69.08 -0.14 3.55 16 10 H 0.07 1.33 5.54 -51.93 -0.29 1.05 16 11 C 0.12 2.06 5.08 -4.04 -0.02 2.04 16 12 N -0.69 -12.32 5.38 -61.29 -0.33 -12.65 16 13 C 0.59 10.41 7.81 -12.40 -0.10 10.31 16 14 O -0.54 -10.55 16.66 5.30 0.09 -10.46 16 15 C 0.05 0.80 6.66 -84.06 -0.56 0.24 16 16 C -0.13 -1.67 9.98 -40.26 -0.40 -2.07 16 17 C -0.29 -2.77 11.41 29.58 0.34 -2.43 16 18 S 0.46 4.96 23.20 -107.50 -2.49 2.47 16 19 N -0.50 -7.73 10.71 24.85 0.27 -7.47 16 20 N -0.71 -16.29 3.30 -54.55 -0.18 -16.47 16 21 C -0.24 -6.21 9.92 -15.06 -0.15 -6.35 16 22 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 23 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 24 N -0.93 -26.61 13.06 55.49 0.72 -25.88 16 25 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.00 6.77 -51.93 -0.35 0.65 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.98 5.59 -51.93 -0.29 0.69 16 33 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.13 2.78 7.27 -52.49 -0.38 2.40 16 38 H 0.07 1.14 6.71 -51.93 -0.35 0.79 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.42 7.94 7.60 -40.82 -0.31 7.63 16 41 H 0.17 1.93 7.99 -52.49 -0.42 1.51 16 42 H 0.18 1.09 8.06 -52.48 -0.42 0.66 16 43 H 0.39 9.62 7.80 -40.82 -0.32 9.30 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -30.41 381.99 -10.35 -40.75 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -5.63 Total: 18.09 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -3.52 Total: -10.93 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.48 Total: -62.47 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.49 Total: 2.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.41 -10.35 -40.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754784947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.492 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds