Wall clock time and date at job start Wed Apr 1 2020 03:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38262 * 119.99880 * 265.00270 * 3 2 1 5 5 C 1.38207 * 119.99901 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.00007 * 359.97438 * 5 4 3 7 7 C 1.38205 * 120.00194 * 359.95451 * 6 5 4 8 8 C 1.38210 * 119.99959 * 84.73029 * 3 2 1 9 9 C 1.50699 * 120.00166 * 359.97438 * 8 3 2 10 10 H 1.08999 * 109.47290 * 325.00380 * 9 8 3 11 11 C 1.53004 * 109.46691 * 85.00539 * 9 8 3 12 12 N 1.46503 * 109.46952 * 175.00076 * 11 9 8 13 13 C 1.34784 * 119.99706 * 179.97438 * 12 11 9 14 14 O 1.21571 * 120.00026 * 359.97438 * 13 12 11 15 15 C 1.47689 * 119.99523 * 180.02562 * 13 12 11 16 16 C 1.39492 * 122.10068 * 179.74169 * 15 13 12 17 17 C 1.35004 * 111.68004 * 179.78164 * 16 15 13 18 18 S 1.71758 * 105.45354 * 0.43152 * 17 16 15 19 19 N 1.30606 * 122.10534 * 0.02562 * 15 13 12 20 20 N 1.46496 * 109.47299 * 205.00011 * 9 8 3 21 21 C 1.36941 * 120.00039 * 85.00432 * 20 9 8 22 22 H 1.08003 * 119.99785 * 0.02562 * 21 20 9 23 23 C 1.38805 * 120.00347 * 179.97438 * 21 20 9 24 24 N 1.31625 * 120.00174 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00112 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47233 * 90.00192 * 25 23 21 27 27 H 1.48507 * 109.47063 * 210.00252 * 25 23 21 28 28 H 1.48505 * 109.47104 * 329.99786 * 25 23 21 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 1.07997 * 119.99789 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00136 * 179.97438 * 5 4 3 36 36 H 1.07998 * 119.99690 * 179.97438 * 6 5 4 37 37 H 1.07996 * 120.00611 * 180.02562 * 7 6 5 38 38 H 1.09004 * 109.46623 * 294.99626 * 11 9 8 39 39 H 1.08994 * 109.47731 * 54.99949 * 11 9 8 40 40 H 0.96996 * 119.99992 * 0.02562 * 12 11 9 41 41 H 1.07991 * 124.15426 * 359.97438 * 16 15 13 42 42 H 1.08005 * 127.27105 * 180.16486 * 17 16 15 43 43 H 0.96999 * 120.00477 * 265.00144 * 20 9 8 44 44 H 0.96996 * 120.00283 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3610 2.0379 -1.1928 5 6 2.8222 3.3407 -1.1928 6 6 2.9543 4.0273 0.0000 7 6 2.6243 3.4110 1.1923 8 6 2.1590 2.1090 1.1919 9 6 1.7943 1.4388 2.4914 10 1 0.9464 0.7728 2.3314 11 6 2.9890 0.6301 3.0009 12 7 2.6766 0.0762 4.3207 13 6 3.5875 -0.6774 4.9681 14 8 4.6681 -0.8978 4.4566 15 6 3.2723 -1.2361 6.2984 16 6 4.1798 -2.0257 7.0047 17 6 3.6780 -2.4190 8.1947 18 16 2.0997 -1.7458 8.2709 19 7 2.1245 -1.0266 6.8851 20 7 1.4356 2.4567 3.4820 21 6 0.1578 2.9470 3.5281 22 1 -0.5856 2.5829 2.8344 23 6 -0.1823 3.9110 4.4671 24 7 0.7235 4.3544 5.3129 25 14 -1.9256 4.5793 4.5303 26 1 -2.7407 3.7493 5.4532 27 1 -1.9006 5.9820 5.0173 28 1 -2.5212 4.5380 3.1706 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.2582 1.5014 -2.1245 35 1 3.0794 3.8226 -2.1245 36 1 3.3150 5.0452 0.0000 37 1 2.7270 3.9474 2.1240 38 1 3.2000 -0.1831 2.3063 39 1 3.8615 1.2790 3.0765 40 1 1.8140 0.2512 4.7283 41 1 5.1639 -2.2875 6.6451 42 1 4.1646 -3.0315 8.9394 43 1 2.1031 2.7834 4.1054 44 1 0.4860 5.0283 5.9688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754784947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:34 Heat of formation + Delta-G solvation = 21.306049 kcal Electronic energy + Delta-G solvation = -27708.987813 eV Core-core repulsion = 23945.296187 eV Total energy + Delta-G solvation = -3763.691625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.50545 -40.66715 -39.31119 -37.43184 -35.36334 -35.00015 -33.60932 -32.46134 -31.15405 -30.29070 -29.39256 -27.32626 -25.63100 -24.73253 -24.18926 -22.55061 -21.79284 -21.38718 -20.87532 -19.41929 -19.24317 -18.68111 -17.45201 -17.18963 -16.86525 -16.55279 -16.24787 -15.86354 -15.69760 -15.38528 -15.06511 -14.68493 -14.58531 -14.40953 -14.38185 -14.26225 -14.13704 -13.86034 -13.67821 -12.99818 -12.90810 -12.85124 -12.64326 -12.38368 -12.28017 -12.16073 -12.12303 -12.06616 -11.84487 -11.62051 -11.43519 -11.14789 -10.94726 -10.84715 -10.21231 -9.73136 -9.56082 -9.37982 -9.04359 -7.92844 -5.22428 -0.40002 0.54878 0.57785 0.65666 0.75458 0.83484 1.45802 1.46410 1.54061 2.10973 2.19033 2.54615 2.97996 3.40811 3.68781 3.77242 3.87900 3.98401 3.99559 4.08236 4.24814 4.29996 4.36652 4.41067 4.44382 4.56231 4.56762 4.59515 4.74736 4.80447 4.82673 4.87205 4.97130 5.10135 5.17032 5.21768 5.29033 5.37143 5.41311 5.45865 5.53779 5.71782 5.80236 5.97858 6.25184 6.30031 6.44636 7.02755 7.34372 8.01776 8.28600 9.29294 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008373 B = 0.004031 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3343.382059 B = 6945.052068 C = 9058.238826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.087 4.087 4 C -0.126 4.126 5 C -0.124 4.124 6 C -0.143 4.143 7 C -0.105 4.105 8 C -0.101 4.101 9 C 0.205 3.795 10 H 0.072 0.928 11 C 0.129 3.871 12 N -0.694 5.694 13 C 0.582 3.418 14 O -0.568 6.568 15 C 0.025 3.975 16 C -0.153 4.153 17 C -0.261 4.261 18 S 0.523 5.477 19 N -0.557 5.557 20 N -0.718 5.718 21 C -0.226 4.226 22 H 0.071 0.929 23 C -0.063 4.063 24 N -0.962 5.962 25 Si 0.961 3.039 26 H -0.287 1.287 27 H -0.300 1.300 28 H -0.275 1.275 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.414 0.586 41 H 0.176 0.824 42 H 0.229 0.771 43 H 0.373 0.627 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 -14.908 -1.879 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.161 4.161 7 C -0.124 4.124 8 C -0.105 4.105 9 C 0.095 3.905 10 H 0.090 0.910 11 C 0.004 3.996 12 N -0.345 5.345 13 C 0.365 3.635 14 O -0.448 6.448 15 C -0.148 4.148 16 C -0.185 4.185 17 C -0.410 4.410 18 S 0.677 5.323 19 N -0.394 5.394 20 N -0.358 5.358 21 C -0.358 4.358 22 H 0.089 0.911 23 C -0.256 4.256 24 N -0.613 5.613 25 Si 0.791 3.209 26 H -0.215 1.215 27 H -0.227 1.227 28 H -0.200 1.200 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.251 0.749 41 H 0.193 0.807 42 H 0.245 0.755 43 H 0.206 0.794 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.807 -14.475 -1.651 14.836 hybrid contribution 0.727 1.111 -0.070 1.329 sum 3.534 -13.364 -1.720 13.930 Atomic orbital electron populations 1.21724 0.94695 1.02229 1.01479 1.20607 0.96255 0.91770 1.03432 1.20004 0.99307 0.97072 0.92423 1.21262 1.00020 0.95362 0.97724 1.21353 0.99826 0.95050 0.97993 1.21302 1.01659 1.00375 0.92793 1.21008 0.98070 0.95255 0.98034 1.20656 0.98952 0.95004 0.95856 1.19529 0.94629 0.89649 0.86671 0.91035 1.21569 0.97504 0.97034 0.83466 1.45862 1.19100 1.49887 1.19622 1.17654 0.83684 0.78354 0.83812 1.90730 1.24044 1.61824 1.68155 1.21133 0.91139 1.04290 0.98191 1.21475 1.02649 0.99571 0.94854 1.27656 1.04007 1.07359 1.01938 1.80252 1.09700 1.31827 1.10475 1.72082 1.26319 1.26931 1.14063 1.42448 1.09668 1.46019 1.37649 1.19379 0.88082 1.16020 1.12300 0.91119 1.25346 1.00669 1.00665 0.98890 1.69808 1.34217 1.34169 1.23067 0.85327 0.80992 0.76951 0.77596 1.21462 1.22655 1.20002 0.90798 0.94576 0.92287 0.91522 0.88879 0.83617 0.83747 0.85767 0.88634 0.89645 0.93034 0.74894 0.80671 0.75459 0.79426 0.94267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.72 71.98 0.70 -2.89 16 2 C -0.08 -2.09 5.38 29.85 0.16 -1.93 16 3 C -0.09 -2.67 5.13 -19.86 -0.10 -2.78 16 4 C -0.13 -3.36 9.68 22.27 0.22 -3.15 16 5 C -0.12 -3.42 10.05 22.27 0.22 -3.19 16 6 C -0.14 -4.75 10.05 22.27 0.22 -4.53 16 7 C -0.11 -4.19 9.32 22.27 0.21 -3.98 16 8 C -0.10 -3.77 5.02 -19.86 -0.10 -3.87 16 9 C 0.20 8.01 1.97 44.25 0.09 8.10 16 10 H 0.07 2.79 5.54 -2.39 -0.01 2.77 16 11 C 0.13 4.74 5.08 86.38 0.44 5.17 16 12 N -0.69 -26.19 5.38 -466.10 -2.51 -28.70 16 13 C 0.58 21.62 7.81 86.74 0.68 22.30 16 14 O -0.57 -22.93 16.66 -3.94 -0.07 -23.00 16 15 C 0.03 0.80 6.66 42.13 0.28 1.08 16 16 C -0.15 -3.67 9.98 21.83 0.22 -3.45 16 17 C -0.26 -4.19 11.41 67.08 0.77 -3.42 16 18 S 0.52 10.26 23.20 -56.49 -1.31 8.95 16 19 N -0.56 -17.23 10.71 -75.29 -0.81 -18.03 16 20 N -0.72 -34.61 3.30 -326.51 -1.08 -35.69 16 21 C -0.23 -12.06 9.92 84.03 0.83 -11.23 16 22 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 23 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 24 N -0.96 -57.69 13.06 21.65 0.28 -57.40 16 25 Si 0.96 45.98 29.55 68.60 2.03 48.01 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 27 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 28 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.09 6.77 -2.39 -0.02 1.08 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.74 5.59 -2.39 -0.01 1.73 16 33 H 0.09 1.83 8.05 -2.39 -0.02 1.81 16 34 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.10 4.42 7.27 -2.91 -0.02 4.40 16 38 H 0.09 2.86 6.71 -2.38 -0.02 2.84 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.41 16.65 7.60 -92.71 -0.70 15.94 16 41 H 0.18 3.88 7.99 -2.91 -0.02 3.86 16 42 H 0.23 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.37 19.92 7.80 -92.71 -0.72 19.20 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -69.69 381.99 1.46 -68.23 By element: Atomic # 1 Polarization: 48.84 SS G_CDS: -0.37 Total: 48.47 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 5.30 Total: -10.83 kcal Atomic # 7 Polarization: -135.72 SS G_CDS: -4.11 Total: -139.83 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.07 Total: -23.00 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: 10.26 SS G_CDS: -1.31 Total: 8.95 kcal Total: -69.69 1.46 -68.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754784947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.531 kcal (2) G-P(sol) polarization free energy of solvation -69.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds