Wall clock time and date at job start Wed Apr 1 2020 03:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46497 * 109.45751 * 2 1 4 4 C 1.36940 * 120.00031 * 60.03014 * 3 2 1 5 5 H 1.08003 * 119.99773 * 0.02562 * 4 3 2 6 6 C 1.38813 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31624 * 119.99875 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00190 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47095 * 269.99805 * 8 6 4 10 10 H 1.48500 * 109.47026 * 30.00071 * 8 6 4 11 11 H 1.48502 * 109.47007 * 149.99598 * 8 6 4 12 12 C 1.53041 * 109.44718 * 119.96867 * 2 1 3 13 13 C 1.53192 * 109.30992 * 181.37898 * 12 2 1 14 14 N 1.46931 * 108.77410 * 305.36192 * 13 12 2 15 15 C 1.34774 * 120.63011 * 233.58412 * 14 13 12 16 16 O 1.21619 * 119.99740 * 171.27386 * 15 14 13 17 17 C 1.47382 * 120.00077 * 351.27763 * 15 14 13 18 18 N 1.29684 * 121.82836 * 353.11720 * 17 15 14 19 19 S 1.56007 * 111.74137 * 179.97438 * 18 17 15 20 20 C 1.76255 * 97.56261 * 359.97438 * 19 18 17 21 21 C 1.38691 * 134.18968 * 180.02562 * 20 19 18 22 22 C 1.36804 * 119.63015 * 179.97438 * 21 20 19 23 23 C 1.38906 * 120.31099 * 0.02562 * 22 21 20 24 24 C 1.36330 * 121.03115 * 359.97278 * 23 22 21 25 25 C 1.40428 * 119.96289 * 359.73560 * 24 23 22 26 26 C 1.46928 * 118.73537 * 53.61188 * 14 13 12 27 27 C 1.53035 * 109.45647 * 240.02904 * 2 1 3 28 28 H 1.08998 * 109.46636 * 59.99674 * 1 2 3 29 29 H 1.08995 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47016 * 300.00028 * 1 2 3 31 31 H 0.96993 * 120.00044 * 240.02487 * 3 2 1 32 32 H 0.96997 * 119.99943 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.49715 * 301.32666 * 12 2 1 34 34 H 1.09000 * 109.49816 * 61.42392 * 12 2 1 35 35 H 1.09002 * 109.58702 * 185.57959 * 13 12 2 36 36 H 1.09001 * 109.58636 * 65.14959 * 13 12 2 37 37 H 1.07994 * 120.18656 * 359.94925 * 21 20 19 38 38 H 1.07996 * 119.84590 * 179.97438 * 22 21 20 39 39 H 1.07993 * 119.48889 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.02451 * 180.02562 * 24 23 22 41 41 H 1.09004 * 109.58125 * 186.59700 * 26 14 13 42 42 H 1.08999 * 109.58680 * 66.17577 * 26 14 13 43 43 H 1.09004 * 109.50369 * 298.57530 * 27 2 1 44 44 H 1.08999 * 109.49998 * 58.64812 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6876 2.2242 1.0274 5 1 1.0675 1.8706 1.8378 6 6 2.1504 3.5329 1.0276 7 7 1.8332 4.3430 2.0153 8 14 3.2235 4.1444 -0.3738 9 1 4.6515 3.9019 -0.0460 10 1 2.8714 3.4179 -1.6202 11 1 3.0007 5.5995 -0.5693 12 6 2.0396 -0.7209 1.2502 13 6 3.5711 -0.6890 1.2645 14 7 4.0676 -1.2494 0.0002 15 6 4.9617 -2.2579 0.0004 16 8 5.2454 -2.8191 -1.0406 17 6 5.5955 -2.6807 1.2620 18 7 5.4209 -2.0263 2.3679 19 16 6.1972 -2.6782 3.5538 20 6 6.9118 -4.0159 2.6558 21 6 7.7490 -5.0689 2.9932 22 6 8.1315 -5.9638 2.0317 23 6 7.6858 -5.8208 0.7239 24 6 6.8624 -4.7933 0.3704 25 6 6.4479 -3.8624 1.3367 26 6 3.5714 -0.6890 -1.2640 27 6 2.0398 -0.7208 -1.2500 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 2.5753 1.6988 -0.7276 32 1 2.1563 5.2576 2.0153 33 1 1.6570 -0.2207 2.1399 34 1 1.6973 -1.7557 1.2384 35 1 3.9413 -1.2850 2.0987 36 1 3.9142 0.3405 1.3676 37 1 8.0974 -5.1816 4.0092 38 1 8.7837 -6.7847 2.2905 39 1 7.9963 -6.5346 -0.0246 40 1 6.5254 -4.6979 -0.6512 41 1 3.9417 -1.2850 -2.0982 42 1 3.9145 0.3405 -1.3671 43 1 1.6977 -1.7557 -1.2383 44 1 1.6570 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755128204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:51 Heat of formation + Delta-G solvation = 57.295881 kcal Electronic energy + Delta-G solvation = -28310.681779 eV Core-core repulsion = 24548.550790 eV Total energy + Delta-G solvation = -3762.130989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.91162 -39.54168 -37.90820 -37.07640 -34.59638 -32.33544 -31.39192 -31.08466 -30.56593 -29.73297 -28.09650 -26.04311 -23.80184 -23.45834 -22.91977 -22.83733 -21.81831 -19.77901 -19.01008 -18.21354 -17.76432 -17.07323 -16.47679 -15.83739 -15.68275 -15.52173 -14.84992 -14.64399 -14.45896 -14.19145 -14.02249 -13.81393 -13.66223 -13.27469 -13.01900 -12.69598 -12.50992 -12.39400 -12.28782 -11.95935 -11.89815 -11.41428 -11.26332 -11.20163 -10.92034 -10.89753 -10.84245 -10.76198 -10.23306 -10.16791 -10.05826 -9.80856 -9.50797 -9.43766 -9.26108 -8.90248 -8.40206 -8.05482 -7.26079 -5.76863 -3.11941 0.13611 0.83097 1.13462 1.43725 1.61132 3.02302 3.09072 3.36049 3.38749 3.44868 3.45045 4.09269 4.34169 4.58559 4.60616 4.74189 4.96002 5.11619 5.14357 5.19609 5.26369 5.28959 5.46696 5.56573 5.63274 5.70053 5.72899 5.76072 5.85966 5.94734 5.98563 6.08536 6.15382 6.17748 6.24341 6.30256 6.46191 6.50260 6.51163 6.59461 6.66397 6.81445 6.99181 7.02608 7.57818 7.99113 8.15736 8.42525 9.20430 9.93420 10.13368 11.41471 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.003336 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.339309 B = 8390.358110 C = 8951.604837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.203 3.797 3 N -0.742 5.742 4 C -0.234 4.234 5 H 0.092 0.908 6 C 0.006 3.994 7 N -0.934 5.934 8 Si 0.877 3.123 9 H -0.286 1.286 10 H -0.278 1.278 11 H -0.292 1.292 12 C -0.132 4.132 13 C 0.092 3.908 14 N -0.578 5.578 15 C 0.584 3.416 16 O -0.541 6.541 17 C 0.093 3.907 18 N -0.465 5.465 19 S 0.365 5.635 20 C -0.197 4.197 21 C -0.075 4.075 22 C -0.091 4.091 23 C -0.122 4.122 24 C -0.041 4.041 25 C -0.086 4.086 26 C 0.115 3.885 27 C -0.132 4.132 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.360 0.640 32 H 0.258 0.742 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.704 -21.618 0.240 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.112 3.888 3 N -0.386 5.386 4 C -0.364 4.364 5 H 0.110 0.890 6 C -0.190 4.190 7 N -0.582 5.582 8 Si 0.708 3.292 9 H -0.213 1.213 10 H -0.204 1.204 11 H -0.219 1.219 12 C -0.173 4.173 13 C -0.032 4.032 14 N -0.309 5.309 15 C 0.367 3.633 16 O -0.419 6.419 17 C -0.094 4.094 18 N -0.290 5.290 19 S 0.527 5.473 20 C -0.318 4.318 21 C -0.097 4.097 22 C -0.114 4.114 23 C -0.142 4.142 24 C -0.063 4.063 25 C -0.097 4.097 26 C -0.007 4.007 27 C -0.171 4.171 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.193 0.807 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.137 0.863 36 H 0.105 0.895 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.165 0.835 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.201 -20.335 1.646 22.810 hybrid contribution 0.940 -0.093 -2.341 2.524 sum 11.141 -20.428 -0.694 23.279 Atomic orbital electron populations 1.22187 0.96955 0.99236 1.02481 1.19517 0.92459 0.85048 0.91805 1.42880 1.61569 1.07679 1.26464 1.18964 1.26233 0.91357 0.99814 0.89015 1.24619 1.00551 0.96358 0.97453 1.69688 1.49872 1.06401 1.32261 0.86666 0.81189 0.78228 0.83118 1.21257 1.20391 1.21864 1.22303 0.94838 0.98997 1.01126 1.22705 0.94627 1.01195 0.84655 1.48018 1.40560 1.33169 1.09178 1.17197 0.79753 0.80224 0.86121 1.90727 1.64221 1.55139 1.31845 1.21955 1.00632 0.94125 0.92684 1.72148 1.21592 1.29795 1.05457 1.81762 1.37564 1.13235 1.14722 1.24313 1.05038 1.03882 0.98602 1.19941 0.96842 0.92738 1.00186 1.21064 0.98857 0.98517 0.92970 1.20902 0.98196 0.98326 0.96753 1.20831 0.94580 0.91424 0.99497 1.19593 0.99714 0.96301 0.94052 1.21657 0.94616 0.98904 0.85570 1.22134 0.94507 1.01005 0.99407 0.93172 0.94372 0.91987 0.80652 0.93159 0.90079 0.93362 0.86316 0.89516 0.84876 0.84891 0.84974 0.83548 0.89343 0.91053 0.91304 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.44 37.16 0.31 -2.31 16 2 C 0.20 3.68 0.74 -131.78 -0.10 3.59 16 3 N -0.74 -16.38 3.94 -47.19 -0.19 -16.56 16 4 C -0.23 -6.16 9.16 -15.06 -0.14 -6.30 16 5 H 0.09 2.60 6.93 -52.48 -0.36 2.23 16 6 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 7 N -0.93 -28.67 13.97 55.49 0.78 -27.90 16 8 Si 0.88 21.81 27.74 -169.99 -4.71 17.09 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 C -0.13 -2.33 4.71 -26.61 -0.13 -2.45 16 13 C 0.09 1.63 5.69 -3.71 -0.02 1.61 16 14 N -0.58 -9.80 2.97 -174.04 -0.52 -10.32 16 15 C 0.58 9.82 7.65 -12.54 -0.10 9.72 16 16 O -0.54 -9.58 14.49 5.26 0.08 -9.50 16 17 C 0.09 1.42 6.65 -81.99 -0.55 0.88 16 18 N -0.46 -6.88 7.13 28.24 0.20 -6.68 16 19 S 0.36 4.21 23.36 -107.50 -2.51 1.70 16 20 C -0.20 -2.23 6.73 -38.49 -0.26 -2.48 16 21 C -0.08 -0.64 10.03 -39.93 -0.40 -1.04 16 22 C -0.09 -0.67 10.00 -39.85 -0.40 -1.07 16 23 C -0.12 -1.03 9.93 -40.02 -0.40 -1.43 16 24 C -0.04 -0.47 9.57 -39.44 -0.38 -0.85 16 25 C -0.09 -1.14 6.10 -105.09 -0.64 -1.78 16 26 C 0.11 1.86 6.17 -3.71 -0.02 1.84 16 27 C -0.13 -2.06 4.96 -26.61 -0.13 -2.19 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.20 7.27 -51.93 -0.38 0.83 16 31 H 0.36 8.00 4.32 -40.82 -0.18 7.82 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.08 1.56 7.31 -51.93 -0.38 1.18 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.12 2.01 4.12 -76.16 -0.31 1.70 16 36 H 0.09 1.79 7.74 -51.93 -0.40 1.39 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.15 1.76 6.67 -52.49 -0.35 1.41 16 41 H 0.09 1.36 7.00 -51.93 -0.36 0.99 16 42 H 0.07 1.23 6.94 -51.93 -0.36 0.86 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -31.58 357.84 -10.55 -42.14 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.64 Total: 8.85 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -3.43 Total: -4.21 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.27 Total: -61.46 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -2.51 Total: 1.70 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.58 -10.55 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755128204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.431 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds