Wall clock time and date at job start Wed Apr 1 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46497 * 109.45751 * 2 1 4 4 C 1.36940 * 120.00031 * 60.03014 * 3 2 1 5 5 H 1.08003 * 119.99773 * 0.02562 * 4 3 2 6 6 C 1.38813 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31624 * 119.99875 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00190 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47095 * 269.99805 * 8 6 4 10 10 H 1.48500 * 109.47026 * 30.00071 * 8 6 4 11 11 H 1.48502 * 109.47007 * 149.99598 * 8 6 4 12 12 C 1.53041 * 109.44718 * 119.96867 * 2 1 3 13 13 C 1.53192 * 109.30992 * 181.37898 * 12 2 1 14 14 N 1.46931 * 108.77410 * 305.36192 * 13 12 2 15 15 C 1.34774 * 120.63011 * 233.58412 * 14 13 12 16 16 O 1.21619 * 119.99740 * 171.27386 * 15 14 13 17 17 C 1.47382 * 120.00077 * 351.27763 * 15 14 13 18 18 N 1.29684 * 121.82836 * 353.11720 * 17 15 14 19 19 S 1.56007 * 111.74137 * 179.97438 * 18 17 15 20 20 C 1.76255 * 97.56261 * 359.97438 * 19 18 17 21 21 C 1.38691 * 134.18968 * 180.02562 * 20 19 18 22 22 C 1.36804 * 119.63015 * 179.97438 * 21 20 19 23 23 C 1.38906 * 120.31099 * 0.02562 * 22 21 20 24 24 C 1.36330 * 121.03115 * 359.97278 * 23 22 21 25 25 C 1.40428 * 119.96289 * 359.73560 * 24 23 22 26 26 C 1.46928 * 118.73537 * 53.61188 * 14 13 12 27 27 C 1.53035 * 109.45647 * 240.02904 * 2 1 3 28 28 H 1.08998 * 109.46636 * 59.99674 * 1 2 3 29 29 H 1.08995 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47016 * 300.00028 * 1 2 3 31 31 H 0.96993 * 120.00044 * 240.02487 * 3 2 1 32 32 H 0.96997 * 119.99943 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.49715 * 301.32666 * 12 2 1 34 34 H 1.09000 * 109.49816 * 61.42392 * 12 2 1 35 35 H 1.09002 * 109.58702 * 185.57959 * 13 12 2 36 36 H 1.09001 * 109.58636 * 65.14959 * 13 12 2 37 37 H 1.07994 * 120.18656 * 359.94925 * 21 20 19 38 38 H 1.07996 * 119.84590 * 179.97438 * 22 21 20 39 39 H 1.07993 * 119.48889 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.02451 * 180.02562 * 24 23 22 41 41 H 1.09004 * 109.58125 * 186.59700 * 26 14 13 42 42 H 1.08999 * 109.58680 * 66.17577 * 26 14 13 43 43 H 1.09004 * 109.50369 * 298.57530 * 27 2 1 44 44 H 1.08999 * 109.49998 * 58.64812 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6876 2.2242 1.0274 5 1 1.0675 1.8706 1.8378 6 6 2.1504 3.5329 1.0276 7 7 1.8332 4.3430 2.0153 8 14 3.2235 4.1444 -0.3738 9 1 4.6515 3.9019 -0.0460 10 1 2.8714 3.4179 -1.6202 11 1 3.0007 5.5995 -0.5693 12 6 2.0396 -0.7209 1.2502 13 6 3.5711 -0.6890 1.2645 14 7 4.0676 -1.2494 0.0002 15 6 4.9617 -2.2579 0.0004 16 8 5.2454 -2.8191 -1.0406 17 6 5.5955 -2.6807 1.2620 18 7 5.4209 -2.0263 2.3679 19 16 6.1972 -2.6782 3.5538 20 6 6.9118 -4.0159 2.6558 21 6 7.7490 -5.0689 2.9932 22 6 8.1315 -5.9638 2.0317 23 6 7.6858 -5.8208 0.7239 24 6 6.8624 -4.7933 0.3704 25 6 6.4479 -3.8624 1.3367 26 6 3.5714 -0.6890 -1.2640 27 6 2.0398 -0.7208 -1.2500 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 2.5753 1.6988 -0.7276 32 1 2.1563 5.2576 2.0153 33 1 1.6570 -0.2207 2.1399 34 1 1.6973 -1.7557 1.2384 35 1 3.9413 -1.2850 2.0987 36 1 3.9142 0.3405 1.3676 37 1 8.0974 -5.1816 4.0092 38 1 8.7837 -6.7847 2.2905 39 1 7.9963 -6.5346 -0.0246 40 1 6.5254 -4.6979 -0.6512 41 1 3.9417 -1.2850 -2.0982 42 1 3.9145 0.3405 -1.3671 43 1 1.6977 -1.7557 -1.2383 44 1 1.6570 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755128204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:50 Heat of formation + Delta-G solvation = 38.546770 kcal Electronic energy + Delta-G solvation = -28311.494801 eV Core-core repulsion = 24548.550790 eV Total energy + Delta-G solvation = -3762.944012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.01816 -40.63469 -39.25326 -38.06520 -36.13015 -34.23828 -32.35523 -32.06755 -31.62567 -31.54520 -29.48438 -27.18693 -25.57526 -24.59088 -24.18862 -23.88011 -22.89886 -21.06312 -19.98677 -19.80728 -19.57634 -18.20697 -17.44704 -17.02093 -16.86243 -16.47130 -16.27059 -16.07798 -15.67656 -15.45006 -15.27031 -15.11003 -14.88296 -14.72760 -14.40147 -14.36905 -13.77311 -13.63992 -13.30830 -13.10897 -13.01208 -12.77521 -12.72367 -12.65846 -12.61575 -12.43232 -12.15499 -11.99831 -11.71489 -11.71270 -11.54097 -11.18980 -11.02493 -10.88195 -10.55393 -10.08209 -9.78364 -9.23004 -8.93687 -7.96417 -5.27311 -0.81109 0.05408 0.27204 0.54958 0.63234 1.35447 1.37232 1.43955 1.84490 1.90166 2.50064 2.65576 3.15073 3.32888 3.35736 3.52683 3.77486 3.89576 3.98271 4.07260 4.09355 4.25583 4.32953 4.38629 4.40534 4.52054 4.54258 4.62604 4.75017 4.84531 4.87437 4.94493 4.97774 5.02390 5.08738 5.10180 5.15425 5.24689 5.31102 5.36541 5.46439 5.53011 5.61013 5.84664 5.86759 6.25019 6.28382 6.87406 7.14060 7.90662 8.08874 9.25397 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.003336 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.339309 B = 8390.358110 C = 8951.604837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.193 3.807 3 N -0.742 5.742 4 C -0.198 4.198 5 H 0.064 0.936 6 C -0.064 4.064 7 N -0.986 5.986 8 Si 0.938 3.062 9 H -0.290 1.290 10 H -0.251 1.251 11 H -0.301 1.301 12 C -0.126 4.126 13 C 0.102 3.898 14 N -0.583 5.583 15 C 0.582 3.418 16 O -0.555 6.555 17 C 0.070 3.930 18 N -0.499 5.499 19 S 0.400 5.600 20 C -0.206 4.206 21 C -0.075 4.075 22 C -0.078 4.078 23 C -0.110 4.110 24 C -0.067 4.067 25 C -0.111 4.111 26 C 0.112 3.888 27 C -0.121 4.121 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.361 0.639 32 H 0.253 0.747 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.130 0.870 36 H 0.049 0.951 37 H 0.165 0.835 38 H 0.176 0.824 39 H 0.162 0.838 40 H 0.132 0.868 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.509 -25.316 -0.539 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.103 3.897 3 N -0.386 5.386 4 C -0.330 4.330 5 H 0.082 0.918 6 C -0.254 4.254 7 N -0.638 5.638 8 Si 0.767 3.233 9 H -0.217 1.217 10 H -0.176 1.176 11 H -0.229 1.229 12 C -0.167 4.167 13 C -0.022 4.022 14 N -0.314 5.314 15 C 0.366 3.634 16 O -0.433 6.433 17 C -0.116 4.116 18 N -0.326 5.326 19 S 0.563 5.437 20 C -0.327 4.327 21 C -0.096 4.096 22 C -0.101 4.101 23 C -0.129 4.129 24 C -0.089 4.089 25 C -0.121 4.121 26 C -0.010 4.010 27 C -0.160 4.160 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.195 0.805 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.147 0.853 36 H 0.068 0.932 37 H 0.183 0.817 38 H 0.193 0.807 39 H 0.180 0.820 40 H 0.150 0.850 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.997 -24.093 0.826 26.927 hybrid contribution 0.475 0.806 -1.988 2.197 sum 12.472 -23.286 -1.162 26.442 Atomic orbital electron populations 1.22102 0.96045 1.00918 1.01144 1.19832 0.93040 0.83194 0.93584 1.42905 1.61525 1.08893 1.25253 1.18880 1.23296 0.91378 0.99400 0.91790 1.25281 1.03062 0.96999 1.00094 1.69855 1.52507 1.06612 1.34814 0.85661 0.79054 0.77181 0.81403 1.21698 1.17592 1.22852 1.22217 0.94818 0.99849 0.99767 1.22487 0.94480 0.99376 0.85889 1.48019 1.41006 1.33445 1.08896 1.17474 0.79304 0.79803 0.86794 1.90699 1.64515 1.55547 1.32584 1.21904 1.02061 0.95509 0.92139 1.71745 1.23305 1.31280 1.06310 1.81419 1.36477 1.13015 1.12800 1.24511 1.05961 1.04627 0.97607 1.20454 0.95515 0.91530 1.02150 1.21581 0.97896 0.98740 0.91848 1.21315 0.96123 0.97220 0.98228 1.20884 0.96483 0.92766 0.98763 1.19705 1.00472 0.96389 0.95546 1.21696 0.95106 0.98383 0.85774 1.22068 0.93873 1.01790 0.98241 0.93058 0.91208 0.94720 0.80482 0.93814 0.92457 0.91132 0.85347 0.93238 0.81743 0.80680 0.82005 0.84996 0.88279 0.92336 0.89337 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 8.44 71.99 0.61 -4.26 16 2 C 0.19 6.88 0.74 3.63 0.00 6.89 16 3 N -0.74 -32.87 3.94 -303.22 -1.19 -34.06 16 4 C -0.20 -10.77 9.16 84.03 0.77 -10.00 16 5 H 0.06 3.81 6.93 -2.91 -0.02 3.79 16 6 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 7 N -0.99 -63.09 13.97 21.65 0.30 -62.78 16 8 Si 0.94 46.07 27.74 68.60 1.90 47.97 16 9 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 10 H -0.25 -11.09 6.52 99.48 0.65 -10.44 16 11 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 12 C -0.13 -4.47 4.71 30.67 0.14 -4.32 16 13 C 0.10 3.71 5.69 86.36 0.49 4.20 16 14 N -0.58 -19.82 2.97 -822.80 -2.45 -22.26 16 15 C 0.58 19.74 7.65 86.65 0.66 20.41 16 16 O -0.55 -19.68 14.49 -4.09 -0.06 -19.74 16 17 C 0.07 2.16 6.65 43.85 0.29 2.45 16 18 N -0.50 -15.02 7.13 -64.55 -0.46 -15.48 16 19 S 0.40 8.94 23.36 -56.49 -1.32 7.62 16 20 C -0.21 -4.26 6.73 22.97 0.15 -4.11 16 21 C -0.07 -0.97 10.03 22.04 0.22 -0.75 16 22 C -0.08 -0.77 10.00 22.09 0.22 -0.55 16 23 C -0.11 -1.47 9.93 21.98 0.22 -1.26 16 24 C -0.07 -1.45 9.57 22.36 0.21 -1.23 16 25 C -0.11 -2.87 6.10 -20.17 -0.12 -2.99 16 26 C 0.11 3.55 6.17 86.36 0.53 4.08 16 27 C -0.12 -3.55 4.96 30.67 0.15 -3.39 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.03 1.35 7.27 -2.39 -0.02 1.33 16 31 H 0.36 15.84 4.32 -92.71 -0.40 15.43 16 32 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.06 2.29 7.31 -2.39 -0.02 2.27 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.13 4.49 4.12 -50.23 -0.21 4.29 16 36 H 0.05 2.14 7.74 -2.39 -0.02 2.13 16 37 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.18 0.33 8.06 -2.91 -0.02 0.30 16 39 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 40 H 0.13 3.17 6.67 -2.91 -0.02 3.15 16 41 H 0.10 2.92 7.00 -2.38 -0.02 2.91 16 42 H 0.06 1.98 6.94 -2.39 -0.02 1.97 16 43 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -72.42 357.84 2.15 -70.28 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.39 Total: 26.55 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.03 Total: 1.91 kcal Atomic # 7 Polarization: -130.79 SS G_CDS: -3.80 Total: -134.59 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.06 Total: -19.74 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.90 Total: 47.97 kcal Atomic # 16 Polarization: 8.94 SS G_CDS: -1.32 Total: 7.62 kcal Total: -72.42 2.15 -70.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755128204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.822 kcal (2) G-P(sol) polarization free energy of solvation -72.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds