Wall clock time and date at job start Wed Apr 1 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00101 * 2 1 4 4 H 1.48505 * 109.47607 * 240.00558 * 3 2 1 5 5 H 1.48500 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47238 * 120.00207 * 3 2 1 7 7 C 1.37877 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99918 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99799 * 0.27440 * 7 2 1 10 10 O 1.42908 * 110.63618 * 300.42437 * 9 7 2 11 11 C 1.55154 * 110.72294 * 177.28718 * 9 7 2 12 12 C 1.54906 * 101.58312 * 206.13149 * 11 9 7 13 13 N 1.47432 * 104.83242 * 37.00611 * 12 11 9 14 14 C 1.34777 * 125.64681 * 155.90679 * 13 12 11 15 15 O 1.21582 * 119.99482 * 176.28454 * 14 13 12 16 16 C 1.47666 * 120.00092 * 356.29112 * 14 13 12 17 17 C 1.39705 * 120.06885 * 27.43128 * 16 14 13 18 18 C 1.37735 * 119.96482 * 179.97438 * 17 16 14 19 19 C 1.39009 * 120.10790 * 0.02562 * 18 17 16 20 20 N 1.39898 * 119.93246 * 179.97438 * 19 18 17 21 21 C 1.35823 * 126.10244 * 179.97438 * 20 19 18 22 22 C 1.35297 * 107.61606 * 179.97438 * 21 20 19 23 23 C 1.39939 * 107.97320 * 0.02562 * 22 21 20 24 24 N 1.30846 * 108.36242 * 359.71727 * 23 22 21 25 25 C 1.39227 * 120.13871 * 359.97438 * 19 18 17 26 26 F 1.35103 * 119.98634 * 180.02562 * 25 19 18 27 27 C 1.37948 * 120.02937 * 359.75025 * 25 19 18 28 28 C 1.47323 * 108.73175 * 335.71805 * 13 12 11 29 29 H 0.97000 * 119.99935 * 359.97438 * 1 2 3 30 30 H 0.96702 * 114.00138 * 59.30151 * 10 9 7 31 31 H 1.09007 * 111.00082 * 324.20576 * 11 9 7 32 32 H 1.08998 * 111.00612 * 88.01458 * 11 9 7 33 33 H 1.09001 * 110.36732 * 155.84209 * 12 11 9 34 34 H 1.08992 * 110.36809 * 278.17076 * 12 11 9 35 35 H 1.07994 * 120.01898 * 359.97438 * 17 16 14 36 36 H 1.07998 * 119.94683 * 180.02562 * 18 17 16 37 37 H 1.08001 * 126.19315 * 359.97438 * 21 20 19 38 38 H 1.08008 * 126.01316 * 180.02562 * 22 21 20 39 39 H 1.08000 * 125.82458 * 180.02562 * 23 22 21 40 40 H 1.08007 * 120.05463 * 180.25078 * 27 25 19 41 41 H 1.08999 * 110.05924 * 241.87070 * 28 13 12 42 42 H 1.08997 * 109.84880 * 120.61411 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0074 10 8 0.4079 -2.5999 1.1421 11 6 2.2321 -3.6991 -0.0754 12 6 1.3500 -4.7848 -0.7407 13 7 0.5315 -4.0546 -1.7258 14 6 -0.0316 -4.5873 -2.8284 15 8 -0.7447 -3.9039 -3.5374 16 6 0.2175 -6.0009 -3.1752 17 6 0.5138 -6.9261 -2.1713 18 6 0.7452 -8.2442 -2.4971 19 6 0.6850 -8.6556 -3.8236 20 7 0.9213 -9.9952 -4.1505 21 6 0.8944 -10.5313 -5.3981 22 6 1.1750 -11.8498 -5.2833 23 6 1.3792 -12.1315 -3.9279 24 7 1.2334 -11.0219 -3.2498 25 6 0.3901 -7.7372 -4.8276 26 9 0.3319 -8.1404 -6.1157 27 6 0.1518 -6.4168 -4.5071 28 6 0.4269 -2.6470 -1.3036 29 1 -0.4850 0.8400 0.0004 30 1 -0.2491 -1.8937 1.2112 31 1 3.0960 -3.4628 -0.6968 32 1 2.5440 -4.0060 0.9229 33 1 1.9733 -5.5263 -1.2405 34 1 0.7120 -5.2631 0.0024 35 1 0.5614 -6.6081 -1.1403 36 1 0.9739 -8.9594 -1.7208 37 1 0.6866 -10.0010 -6.3158 38 1 1.2314 -12.5601 -6.0950 39 1 1.6213 -13.0986 -3.5127 40 1 -0.0811 -5.7048 -5.2852 41 1 -0.6150 -2.3907 -1.1118 42 1 0.8342 -1.9971 -2.0781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771754612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:58 Heat of formation + Delta-G solvation = 3.597068 kcal Electronic energy + Delta-G solvation = -29535.101926 eV Core-core repulsion = 25204.429206 eV Total energy + Delta-G solvation = -4330.672720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.49037 -41.70483 -40.23241 -38.50176 -37.23445 -34.56511 -33.80312 -32.26564 -31.27901 -30.68531 -30.25508 -29.42087 -27.84832 -25.60496 -24.30292 -23.51452 -22.73047 -21.44773 -21.05247 -19.93269 -19.54156 -18.43492 -17.83001 -17.23149 -16.63178 -16.38961 -15.82812 -15.61575 -15.51592 -15.20381 -15.14667 -14.93398 -14.52485 -14.31969 -14.08875 -13.53667 -13.36379 -13.26873 -13.00887 -12.89747 -12.64450 -12.45302 -12.29743 -11.87976 -11.58175 -11.51052 -11.10939 -11.06033 -10.85015 -10.76757 -10.65215 -10.56715 -10.24638 -9.66062 -9.49754 -9.42247 -9.26019 -8.73195 -8.42704 -8.39666 -8.05056 -6.35048 -4.43911 0.15906 0.78581 1.66051 1.93082 2.43366 2.82880 3.17998 3.24478 3.25116 3.27927 3.57411 3.65825 4.04805 4.21971 4.36443 4.50055 4.59151 4.75666 4.85994 4.92402 4.99583 5.23355 5.28254 5.29918 5.46593 5.56499 5.58307 5.63467 5.69046 5.75309 5.85735 5.93417 6.07349 6.19246 6.27479 6.38361 6.65250 6.71839 6.73566 6.80017 7.16196 7.21989 7.27501 7.66819 7.91363 8.00759 8.47337 8.59774 9.23361 9.32887 10.72747 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.002381 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.528320 B =11756.268571 C =12313.002179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.119 4.119 12 C 0.090 3.910 13 N -0.600 5.600 14 C 0.561 3.439 15 O -0.541 6.541 16 C -0.099 4.099 17 C -0.082 4.082 18 C -0.101 4.101 19 C 0.147 3.853 20 N -0.326 5.326 21 C 0.048 3.952 22 C -0.263 4.263 23 C 0.058 3.942 24 N -0.288 5.288 25 C 0.069 3.931 26 F -0.130 7.130 27 C -0.070 4.070 28 C 0.102 3.898 29 H 0.272 0.728 30 H 0.385 0.615 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.192 0.808 38 H 0.156 0.844 39 H 0.192 0.808 40 H 0.158 0.842 41 H 0.070 0.930 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 -20.065 -7.623 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.157 4.157 12 C -0.033 4.033 13 N -0.332 5.332 14 C 0.348 3.652 15 O -0.420 6.420 16 C -0.103 4.103 17 C -0.101 4.101 18 C -0.121 4.121 19 C 0.053 3.947 20 N -0.102 5.102 21 C -0.093 4.093 22 C -0.291 4.291 23 C -0.130 4.130 24 N -0.106 5.106 25 C 0.047 3.953 26 F -0.109 7.109 27 C -0.091 4.091 28 C -0.019 4.019 29 H 0.082 0.918 30 H 0.236 0.764 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.177 0.823 36 H 0.171 0.829 37 H 0.208 0.792 38 H 0.173 0.827 39 H 0.208 0.792 40 H 0.175 0.825 41 H 0.088 0.912 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.064 -19.530 -6.832 20.793 hybrid contribution 0.029 0.836 -1.321 1.563 sum 2.093 -18.694 -8.153 20.502 Atomic orbital electron populations 1.69622 1.06009 1.28188 1.49537 1.25074 0.95066 0.99821 0.93288 0.86446 0.79543 0.82009 0.78842 1.20013 1.21047 1.19950 1.21462 0.93686 0.90035 1.52561 0.91502 1.19488 0.86157 0.92175 0.81393 1.86090 1.51731 1.54895 1.46748 1.22794 0.97596 0.94863 1.00415 1.22740 0.93609 0.95914 0.91041 1.48787 1.49306 1.13072 1.22023 1.17629 0.80853 0.85795 0.80879 1.90793 1.38178 1.61965 1.51077 1.19980 1.02288 0.94927 0.93097 1.21984 0.95252 0.91583 1.01283 1.20772 1.01114 0.96728 0.93492 1.17657 1.02854 0.79875 0.94339 1.45875 1.53163 1.05688 1.05485 1.23518 1.00652 0.95269 0.89892 1.21695 1.14089 0.95646 0.97666 1.24138 0.98406 0.97515 0.92915 1.77454 1.22224 0.95104 1.15803 1.16980 1.08285 0.92507 0.77559 1.91391 1.94394 1.90378 1.34703 1.21027 0.97475 0.93139 0.97421 1.23192 1.02097 0.77316 0.99260 0.91812 0.76387 0.90299 0.90212 0.91063 0.90971 0.82273 0.82894 0.79161 0.82666 0.79151 0.82487 0.91200 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.08 10.96 55.43 0.61 -22.48 16 2 C 0.07 1.79 5.27 -17.82 -0.09 1.70 16 3 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -13.52 8.11 -34.44 -0.28 -13.79 16 8 H 0.07 1.65 7.77 -52.49 -0.41 1.24 16 9 C 0.25 5.67 0.85 -89.94 -0.08 5.60 16 10 O -0.59 -13.98 13.08 -35.23 -0.46 -14.44 16 11 C -0.12 -2.18 6.23 -24.59 -0.15 -2.34 16 12 C 0.09 1.41 5.01 -2.53 -0.01 1.40 16 13 N -0.60 -11.47 3.33 -171.46 -0.57 -12.05 16 14 C 0.56 10.49 7.64 -12.41 -0.09 10.40 16 15 O -0.54 -12.00 16.98 5.29 0.09 -11.91 16 16 C -0.10 -1.43 5.70 -104.96 -0.60 -2.03 16 17 C -0.08 -0.99 7.92 -39.22 -0.31 -1.30 16 18 C -0.10 -1.15 9.64 -39.48 -0.38 -1.53 16 19 C 0.15 1.79 6.70 -83.52 -0.56 1.23 16 20 N -0.33 -3.91 3.81 -10.50 -0.04 -3.95 16 21 C 0.05 0.48 10.55 -16.83 -0.18 0.30 16 22 C -0.26 -2.19 10.80 -39.99 -0.43 -2.62 16 23 C 0.06 0.51 12.02 -17.33 -0.21 0.30 16 24 N -0.29 -3.37 11.85 30.64 0.36 -3.01 16 25 C 0.07 0.83 7.22 -39.32 -0.28 0.55 16 26 F -0.13 -1.44 13.91 2.25 0.03 -1.41 16 27 C -0.07 -0.93 9.56 -39.15 -0.37 -1.30 16 28 C 0.10 2.34 5.39 -2.90 -0.02 2.33 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.38 9.53 7.24 45.56 0.33 9.86 16 31 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.07 0.91 6.17 -51.93 -0.32 0.59 16 34 H 0.07 1.06 7.28 -51.93 -0.38 0.68 16 35 H 0.16 1.76 4.56 -52.49 -0.24 1.52 16 36 H 0.15 1.57 7.68 -52.49 -0.40 1.16 16 37 H 0.19 1.60 5.72 -52.49 -0.30 1.30 16 38 H 0.16 0.85 8.06 -52.48 -0.42 0.42 16 39 H 0.19 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.16 2.02 7.88 -52.48 -0.41 1.60 16 41 H 0.07 1.76 8.00 -51.93 -0.42 1.34 16 42 H 0.07 1.75 7.81 -51.93 -0.41 1.35 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -29.76 354.08 -7.49 -37.25 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -3.77 Total: 12.86 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -4.05 Total: -1.11 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.36 Total: -41.48 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.37 Total: -26.36 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.03 Total: -1.41 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.76 -7.49 -37.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771754612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.849 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds