Wall clock time and date at job start Wed Apr 1 2020 03:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46882 * 2 1 4 4 C 1.46495 * 119.99717 * 94.62512 * 3 2 1 5 5 C 1.50696 * 109.47418 * 84.02745 * 4 3 2 6 6 H 1.07999 * 119.99949 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00511 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99658 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00260 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46914 * 89.99910 * 9 7 5 11 11 H 1.48502 * 109.47291 * 209.99959 * 9 7 5 12 12 H 1.48501 * 109.47184 * 329.99958 * 9 7 5 13 13 C 1.34771 * 120.00065 * 274.90310 * 3 2 1 14 14 O 1.21283 * 120.00217 * 4.82182 * 13 3 2 15 15 C 1.50704 * 119.99973 * 184.82692 * 13 3 2 16 16 H 1.08996 * 109.46903 * 316.42426 * 15 13 3 17 17 O 1.42899 * 109.47124 * 196.42757 * 15 13 3 18 18 C 1.52993 * 109.47144 * 76.42369 * 15 13 3 19 19 C 1.50703 * 109.47030 * 185.33098 * 18 15 13 20 20 C 1.38255 * 119.99710 * 90.00477 * 19 18 15 21 21 C 1.38217 * 119.99815 * 180.02562 * 20 19 18 22 22 C 1.38255 * 120.00012 * 359.95076 * 21 20 19 23 23 C 1.38215 * 119.99939 * 0.02562 * 22 21 20 24 24 C 1.50703 * 119.99871 * 179.97438 * 23 22 21 25 25 F 1.39899 * 109.47211 * 0.02562 * 24 23 22 26 26 F 1.39897 * 109.47063 * 119.99803 * 24 23 22 27 27 F 1.39893 * 109.47089 * 240.00291 * 24 23 22 28 28 C 1.38216 * 120.00287 * 269.72893 * 19 18 15 29 29 H 1.08997 * 109.47820 * 55.03960 * 1 2 3 30 30 H 1.09000 * 109.46643 * 175.04151 * 1 2 3 31 31 H 1.08998 * 109.47085 * 295.03542 * 1 2 3 32 32 H 1.08998 * 109.46872 * 240.00634 * 2 1 3 33 33 H 1.09001 * 109.47593 * 119.99751 * 2 1 3 34 34 H 1.09001 * 109.47301 * 204.02779 * 4 3 2 35 35 H 1.09005 * 109.47813 * 324.02089 * 4 3 2 36 36 H 0.96999 * 120.00120 * 179.97438 * 8 7 5 37 37 H 0.96700 * 114.00018 * 300.00249 * 17 15 13 38 38 H 1.09000 * 109.47551 * 305.33573 * 18 15 13 39 39 H 1.09010 * 109.47029 * 65.33578 * 18 15 13 40 40 H 1.07994 * 119.99879 * 359.97438 * 20 19 18 41 41 H 1.07999 * 119.99490 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.99933 * 180.02562 * 22 21 20 43 43 H 1.08004 * 119.99704 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3588 2.0377 1.2646 5 6 3.7665 1.6707 1.6580 6 1 4.3491 1.0138 1.0291 7 6 4.3108 2.1736 2.8208 8 7 3.6016 2.9739 3.5863 9 14 6.0554 1.7180 3.3087 10 1 7.0042 2.7040 2.7317 11 1 6.1733 1.7253 4.7890 12 1 6.3756 0.3627 2.7933 13 6 2.1488 2.0499 -1.1629 14 8 1.7804 1.5404 -2.2000 15 6 2.7528 3.4306 -1.1745 16 1 2.3439 4.0129 -0.3489 17 8 2.4431 4.0755 -2.4116 18 6 4.2712 3.3243 -1.0208 19 6 4.8619 4.7056 -0.9010 20 6 5.0089 5.2889 0.3438 21 6 5.5501 6.5559 0.4537 22 6 5.9454 7.2396 -0.6812 23 6 5.7988 6.6562 -1.9256 24 6 6.2291 7.4017 -3.1626 25 9 6.7417 8.6517 -2.7992 26 9 7.2172 6.6688 -3.8287 27 9 5.1284 7.5766 -4.0082 28 6 5.2618 5.3870 -2.0351 29 1 -0.3635 0.5888 -0.8422 30 1 -0.3632 -1.0238 -0.0888 31 1 -0.3633 0.4349 0.9311 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2853 3.1186 1.1443 35 1 1.6675 1.7109 2.0415 36 1 3.9843 3.3274 4.4045 37 1 2.7770 3.6114 -3.1914 38 1 4.5065 2.7496 -0.1251 39 1 4.6907 2.8243 -1.8940 40 1 4.7001 4.7548 1.2302 41 1 5.6646 7.0117 1.4261 42 1 6.3686 8.2295 -0.5953 43 1 5.1507 4.9297 -3.0072 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275184385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:46 Heat of formation + Delta-G solvation = -223.519968 kcal Electronic energy + Delta-G solvation = -31394.853949 eV Core-core repulsion = 26603.643509 eV Total energy + Delta-G solvation = -4791.210441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.14152 -47.67455 -47.58773 -39.93655 -39.04233 -36.39858 -35.30027 -33.10015 -32.78625 -31.57962 -30.83089 -28.49922 -27.24251 -25.92679 -24.63588 -23.21706 -22.37908 -22.13171 -20.94267 -18.91010 -18.45914 -18.33123 -18.00252 -16.98085 -16.63771 -16.29728 -16.06444 -15.37932 -15.16344 -14.64407 -14.56297 -14.49584 -14.32036 -14.21162 -14.05403 -13.84412 -13.77803 -13.76816 -13.55989 -13.10169 -12.84327 -12.57652 -12.50422 -12.40745 -12.13129 -11.84741 -11.65622 -11.51416 -11.29686 -11.14479 -11.01156 -10.97763 -10.83186 -10.55013 -10.37613 -10.22306 -9.88580 -9.08891 -8.98332 -8.75322 -8.52334 -7.88595 -6.37530 -4.45582 1.11495 1.39783 2.70064 3.09089 3.13590 3.18770 3.22669 3.64058 3.76682 3.78656 4.06291 4.16218 4.47439 4.67983 4.87918 4.93963 4.96649 5.13249 5.31331 5.38600 5.45177 5.52635 5.55149 5.60555 5.75747 5.83323 5.84636 5.99594 6.15699 6.19674 6.26157 6.33995 6.51261 6.54134 6.58799 6.64614 6.81341 6.98128 7.01775 7.36135 7.55808 7.83318 7.85853 8.18566 8.58426 8.81111 9.21583 10.67779 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.004073 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.940994 B = 6872.885978 C = 8775.238573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 N -0.589 5.589 4 C 0.232 3.768 5 C -0.541 4.541 6 H 0.065 0.935 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.487 3.513 14 O -0.569 6.569 15 C 0.104 3.896 16 H 0.125 0.875 17 O -0.544 6.544 18 C -0.126 4.126 19 C -0.063 4.063 20 C -0.071 4.071 21 C -0.122 4.122 22 C -0.084 4.084 23 C -0.192 4.192 24 C 0.509 3.491 25 F -0.181 7.181 26 F -0.180 7.180 27 F -0.177 7.177 28 C -0.059 4.059 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.038 0.962 36 H 0.268 0.732 37 H 0.375 0.625 38 H 0.137 0.863 39 H 0.071 0.929 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 5.494 -6.375 9.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.321 5.321 4 C 0.112 3.888 5 C -0.579 4.579 6 H 0.083 0.917 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.275 3.725 14 O -0.450 6.450 15 C 0.042 3.958 16 H 0.142 0.858 17 O -0.349 6.349 18 C -0.164 4.164 19 C -0.063 4.063 20 C -0.089 4.089 21 C -0.140 4.140 22 C -0.102 4.102 23 C -0.193 4.193 24 C 0.455 3.545 25 F -0.163 7.163 26 F -0.162 7.162 27 F -0.159 7.159 28 C -0.077 4.077 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.223 0.777 38 H 0.155 0.845 39 H 0.090 0.910 40 H 0.167 0.833 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.947 5.787 -6.348 9.082 hybrid contribution 1.317 -0.462 0.008 1.396 sum 4.264 5.325 -6.341 9.314 Atomic orbital electron populations 1.22104 0.96841 1.01309 1.01987 1.21247 0.93499 0.83540 1.02364 1.48301 1.62305 1.13339 1.08139 1.19548 0.96324 0.93329 0.79615 1.21419 0.98566 1.30562 1.07375 0.91702 1.24909 0.97899 0.94682 0.95846 1.69919 1.36889 1.31444 1.13755 0.86666 0.84481 0.79464 0.78094 1.20046 1.20932 1.19662 1.21319 0.79021 0.88464 0.83733 1.90603 1.51906 1.69814 1.32668 1.21800 0.94106 0.91535 0.88338 0.85779 1.86582 1.81434 1.51544 1.15321 1.21617 0.93623 0.94089 1.07030 1.19719 0.97855 0.96370 0.92381 1.21708 0.94207 0.94514 0.98494 1.21168 0.99431 0.95133 0.98248 1.20913 0.98263 0.99901 0.91106 1.19824 1.09689 0.97496 0.92287 1.18368 0.74843 0.77069 0.84176 1.93139 1.87573 1.43948 1.91618 1.93200 1.63172 1.77198 1.82589 1.93216 1.53776 1.95457 1.73406 1.20726 0.95395 0.92314 0.99306 0.92590 0.92471 0.92687 0.91547 0.90083 0.94221 0.94436 0.92240 0.77706 0.84540 0.90989 0.83320 0.85019 0.85081 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.20 37.16 0.38 -2.15 16 2 C 0.12 2.02 6.06 -4.04 -0.02 2.00 16 3 N -0.59 -11.34 2.47 -175.06 -0.43 -11.77 16 4 C 0.23 4.85 4.81 -5.20 -0.03 4.82 16 5 C -0.54 -12.01 6.85 -34.44 -0.24 -12.25 16 6 H 0.06 1.47 7.58 -52.49 -0.40 1.07 16 7 C 0.07 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.88 -21.29 13.29 55.43 0.74 -20.56 16 9 Si 0.89 18.33 29.54 -169.99 -5.02 13.31 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 C 0.49 9.44 6.91 -10.99 -0.08 9.36 16 14 O -0.57 -12.07 15.98 -13.80 -0.22 -12.29 16 15 C 0.10 1.81 2.61 -27.88 -0.07 1.74 16 16 H 0.12 2.26 6.34 -51.93 -0.33 1.93 16 17 O -0.54 -9.11 12.61 -54.58 -0.69 -9.80 16 18 C -0.13 -2.05 4.93 -27.88 -0.14 -2.19 16 19 C -0.06 -0.98 4.97 -104.62 -0.52 -1.50 16 20 C -0.07 -1.12 9.70 -39.58 -0.38 -1.50 16 21 C -0.12 -1.66 10.05 -39.58 -0.40 -2.05 16 22 C -0.08 -1.08 9.43 -39.58 -0.37 -1.46 16 23 C -0.19 -2.64 5.37 -104.62 -0.56 -3.20 16 24 C 0.51 6.65 3.32 36.01 0.12 6.77 16 25 F -0.18 -2.27 15.97 2.25 0.04 -2.23 16 26 F -0.18 -2.38 17.23 2.25 0.04 -2.34 16 27 F -0.18 -2.41 17.24 2.25 0.04 -2.37 16 28 C -0.06 -0.85 8.98 -39.59 -0.36 -1.20 16 29 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.15 7.65 -51.93 -0.40 0.76 16 33 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 34 H 0.04 0.85 5.83 -51.93 -0.30 0.55 16 35 H 0.04 0.85 8.12 -51.93 -0.42 0.42 16 36 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 37 H 0.38 5.38 8.68 45.56 0.40 5.77 16 38 H 0.14 2.51 4.67 -51.93 -0.24 2.27 16 39 H 0.07 1.08 8.08 -51.92 -0.42 0.66 16 40 H 0.15 2.58 8.06 -52.49 -0.42 2.16 16 41 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.13 1.42 7.16 -52.48 -0.38 1.04 16 43 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -25.54 374.32 -7.21 -32.75 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.58 Total: 10.95 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.76 Total: -1.29 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.30 Total: -32.33 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.91 Total: -22.09 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.11 Total: -6.95 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -25.54 -7.21 -32.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275184385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.767 kcal (2) G-P(sol) polarization free energy of solvation -25.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds