Wall clock time and date at job start Wed Apr 1 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46882 * 2 1 4 4 C 1.46495 * 119.99717 * 94.62512 * 3 2 1 5 5 C 1.50696 * 109.47418 * 84.02745 * 4 3 2 6 6 H 1.07999 * 119.99949 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00511 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99658 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00260 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46914 * 89.99910 * 9 7 5 11 11 H 1.48502 * 109.47291 * 209.99959 * 9 7 5 12 12 H 1.48501 * 109.47184 * 329.99958 * 9 7 5 13 13 C 1.34771 * 120.00065 * 274.90310 * 3 2 1 14 14 O 1.21283 * 120.00217 * 4.82182 * 13 3 2 15 15 C 1.50704 * 119.99973 * 184.82692 * 13 3 2 16 16 H 1.08996 * 109.46903 * 316.42426 * 15 13 3 17 17 O 1.42899 * 109.47124 * 196.42757 * 15 13 3 18 18 C 1.52993 * 109.47144 * 76.42369 * 15 13 3 19 19 C 1.50703 * 109.47030 * 185.33098 * 18 15 13 20 20 C 1.38255 * 119.99710 * 90.00477 * 19 18 15 21 21 C 1.38217 * 119.99815 * 180.02562 * 20 19 18 22 22 C 1.38255 * 120.00012 * 359.95076 * 21 20 19 23 23 C 1.38215 * 119.99939 * 0.02562 * 22 21 20 24 24 C 1.50703 * 119.99871 * 179.97438 * 23 22 21 25 25 F 1.39899 * 109.47211 * 0.02562 * 24 23 22 26 26 F 1.39897 * 109.47063 * 119.99803 * 24 23 22 27 27 F 1.39893 * 109.47089 * 240.00291 * 24 23 22 28 28 C 1.38216 * 120.00287 * 269.72893 * 19 18 15 29 29 H 1.08997 * 109.47820 * 55.03960 * 1 2 3 30 30 H 1.09000 * 109.46643 * 175.04151 * 1 2 3 31 31 H 1.08998 * 109.47085 * 295.03542 * 1 2 3 32 32 H 1.08998 * 109.46872 * 240.00634 * 2 1 3 33 33 H 1.09001 * 109.47593 * 119.99751 * 2 1 3 34 34 H 1.09001 * 109.47301 * 204.02779 * 4 3 2 35 35 H 1.09005 * 109.47813 * 324.02089 * 4 3 2 36 36 H 0.96999 * 120.00120 * 179.97438 * 8 7 5 37 37 H 0.96700 * 114.00018 * 300.00249 * 17 15 13 38 38 H 1.09000 * 109.47551 * 305.33573 * 18 15 13 39 39 H 1.09010 * 109.47029 * 65.33578 * 18 15 13 40 40 H 1.07994 * 119.99879 * 359.97438 * 20 19 18 41 41 H 1.07999 * 119.99490 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.99933 * 180.02562 * 22 21 20 43 43 H 1.08004 * 119.99704 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3588 2.0377 1.2646 5 6 3.7665 1.6707 1.6580 6 1 4.3491 1.0138 1.0291 7 6 4.3108 2.1736 2.8208 8 7 3.6016 2.9739 3.5863 9 14 6.0554 1.7180 3.3087 10 1 7.0042 2.7040 2.7317 11 1 6.1733 1.7253 4.7890 12 1 6.3756 0.3627 2.7933 13 6 2.1488 2.0499 -1.1629 14 8 1.7804 1.5404 -2.2000 15 6 2.7528 3.4306 -1.1745 16 1 2.3439 4.0129 -0.3489 17 8 2.4431 4.0755 -2.4116 18 6 4.2712 3.3243 -1.0208 19 6 4.8619 4.7056 -0.9010 20 6 5.0089 5.2889 0.3438 21 6 5.5501 6.5559 0.4537 22 6 5.9454 7.2396 -0.6812 23 6 5.7988 6.6562 -1.9256 24 6 6.2291 7.4017 -3.1626 25 9 6.7417 8.6517 -2.7992 26 9 7.2172 6.6688 -3.8287 27 9 5.1284 7.5766 -4.0082 28 6 5.2618 5.3870 -2.0351 29 1 -0.3635 0.5888 -0.8422 30 1 -0.3632 -1.0238 -0.0888 31 1 -0.3633 0.4349 0.9311 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2853 3.1186 1.1443 35 1 1.6675 1.7109 2.0415 36 1 3.9843 3.3274 4.4045 37 1 2.7770 3.6114 -3.1914 38 1 4.5065 2.7496 -0.1251 39 1 4.6907 2.8243 -1.8940 40 1 4.7001 4.7548 1.2302 41 1 5.6646 7.0117 1.4261 42 1 6.3686 8.2295 -0.5953 43 1 5.1507 4.9297 -3.0072 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275184385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:45 Heat of formation + Delta-G solvation = -235.028144 kcal Electronic energy + Delta-G solvation = -31395.352981 eV Core-core repulsion = 26603.643509 eV Total energy + Delta-G solvation = -4791.709473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.17170 -48.68932 -48.63200 -41.35949 -40.28790 -37.79034 -36.89786 -34.71271 -34.12606 -32.70286 -32.23309 -29.83068 -28.92626 -26.99803 -25.96315 -24.94103 -23.68750 -23.29529 -22.10887 -20.40287 -19.49152 -19.36257 -19.13285 -18.61345 -18.26165 -17.78190 -17.19442 -16.79104 -16.49473 -16.17638 -16.01099 -15.55424 -15.44138 -15.36804 -15.10189 -15.07950 -14.99165 -14.84459 -14.79786 -14.43748 -14.28997 -13.99950 -13.76028 -13.60993 -13.54755 -13.34916 -13.13459 -12.88969 -12.71619 -12.66778 -12.56829 -12.26344 -12.08917 -12.02047 -11.80579 -11.79154 -11.55409 -10.62707 -10.44111 -10.12630 -9.74340 -9.49712 -8.16262 -6.27917 -0.01139 0.29125 1.43564 1.49442 1.53823 1.61657 1.65931 2.23065 2.43981 2.54947 2.71735 3.02742 3.13127 3.36767 3.43302 3.57766 3.85812 3.89624 4.04889 4.11309 4.18028 4.24436 4.35729 4.40441 4.43821 4.54602 4.64494 4.81870 4.89112 4.89789 4.95585 5.06403 5.16169 5.20610 5.22653 5.32013 5.39985 5.62355 5.69864 5.82211 5.84507 6.07030 6.51566 6.64268 6.82964 7.22561 7.42442 8.88932 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.004073 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.940994 B = 6872.885978 C = 8775.238573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.110 3.890 3 N -0.592 5.592 4 C 0.246 3.754 5 C -0.535 4.535 6 H 0.059 0.941 7 C 0.041 3.959 8 N -0.909 5.909 9 Si 0.934 3.066 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.484 3.516 14 O -0.587 6.587 15 C 0.114 3.886 16 H 0.113 0.887 17 O -0.547 6.547 18 C -0.116 4.116 19 C -0.075 4.075 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.077 4.077 23 C -0.196 4.196 24 C 0.516 3.484 25 F -0.176 7.176 26 F -0.181 7.181 27 F -0.180 7.180 28 C -0.062 4.062 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.033 0.967 35 H 0.021 0.979 36 H 0.268 0.732 37 H 0.386 0.614 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.126 0.874 41 H 0.152 0.848 42 H 0.157 0.843 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.306 6.072 -6.933 10.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.012 4.012 3 N -0.322 5.322 4 C 0.126 3.874 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.161 4.161 8 N -0.547 5.547 9 Si 0.760 3.240 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.272 3.728 14 O -0.470 6.470 15 C 0.052 3.948 16 H 0.131 0.869 17 O -0.353 6.353 18 C -0.153 4.153 19 C -0.075 4.075 20 C -0.106 4.106 21 C -0.138 4.138 22 C -0.095 4.095 23 C -0.198 4.198 24 C 0.462 3.538 25 F -0.157 7.157 26 F -0.162 7.162 27 F -0.162 7.162 28 C -0.080 4.080 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.236 0.764 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.144 0.856 41 H 0.170 0.830 42 H 0.174 0.826 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.842 6.354 -6.918 10.148 hybrid contribution 1.026 -0.630 0.146 1.213 sum 4.868 5.724 -6.772 10.115 Atomic orbital electron populations 1.22014 0.95213 1.02845 1.01158 1.21415 0.94864 0.82504 1.02446 1.48330 1.62243 1.14091 1.07580 1.19246 0.95378 0.92970 0.79820 1.21471 0.98888 1.29918 1.07078 0.92239 1.25366 1.00216 0.94654 0.95909 1.69989 1.38078 1.32470 1.14164 0.85920 0.81688 0.79030 0.77362 1.19488 1.21336 1.19905 1.21663 0.78651 0.89095 0.83346 1.90585 1.52805 1.70527 1.33103 1.21631 0.94702 0.90059 0.88392 0.86923 1.86555 1.81618 1.51623 1.15535 1.21431 0.92777 0.94729 1.06404 1.19629 0.98849 0.96109 0.92875 1.21618 0.95579 0.95605 0.97780 1.21382 0.98559 0.94255 0.99612 1.21201 0.97179 1.00710 0.90401 1.19981 1.09399 0.97366 0.93004 1.18203 0.74710 0.77127 0.83775 1.93151 1.87471 1.43563 1.91546 1.93203 1.63157 1.77262 1.82568 1.93213 1.54004 1.95477 1.73478 1.20827 0.95191 0.92651 0.99355 0.94151 0.89611 0.92811 0.91583 0.89797 0.94881 0.96122 0.92268 0.76404 0.86671 0.89778 0.85628 0.82991 0.82560 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.62 10.20 71.98 0.73 -3.89 16 2 C 0.11 3.78 6.06 86.38 0.52 4.30 16 3 N -0.59 -22.90 2.47 -826.16 -2.04 -24.94 16 4 C 0.25 10.50 4.81 85.63 0.41 10.91 16 5 C -0.54 -23.96 6.85 25.60 0.18 -23.79 16 6 H 0.06 2.71 7.58 -2.91 -0.02 2.69 16 7 C 0.04 1.86 5.46 84.66 0.46 2.33 16 8 N -0.91 -44.24 13.29 21.45 0.28 -43.95 16 9 Si 0.93 37.45 29.54 68.60 2.03 39.48 16 10 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 11 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 13 C 0.48 18.79 6.91 87.66 0.61 19.39 16 14 O -0.59 -24.75 15.98 15.47 0.25 -24.51 16 15 C 0.11 3.98 2.61 29.85 0.08 4.06 16 16 H 0.11 4.20 6.34 -2.39 -0.02 4.18 16 17 O -0.55 -17.94 12.61 -130.48 -1.65 -19.59 16 18 C -0.12 -3.76 4.93 29.85 0.15 -3.61 16 19 C -0.07 -2.27 4.97 -19.86 -0.10 -2.37 16 20 C -0.09 -2.73 9.70 22.27 0.22 -2.52 16 21 C -0.12 -3.08 10.05 22.27 0.22 -2.86 16 22 C -0.08 -1.81 9.43 22.27 0.21 -1.60 16 23 C -0.20 -4.99 5.37 -19.87 -0.11 -5.10 16 24 C 0.52 12.30 3.32 71.24 0.24 12.54 16 25 F -0.18 -3.94 15.97 44.97 0.72 -3.22 16 26 F -0.18 -4.39 17.23 44.97 0.77 -3.62 16 27 F -0.18 -4.55 17.24 44.97 0.78 -3.78 16 28 C -0.06 -1.69 8.98 22.27 0.20 -1.49 16 29 H 0.04 1.33 8.10 -2.39 -0.02 1.31 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 2.26 7.65 -2.39 -0.02 2.24 16 33 H 0.08 2.80 8.04 -2.39 -0.02 2.78 16 34 H 0.03 1.46 5.83 -2.39 -0.01 1.45 16 35 H 0.02 0.95 8.12 -2.38 -0.02 0.93 16 36 H 0.27 12.55 8.31 -92.71 -0.77 11.78 16 37 H 0.39 10.67 8.68 -74.06 -0.64 10.03 16 38 H 0.12 4.28 4.67 -2.39 -0.01 4.27 16 39 H 0.08 2.46 8.08 -2.38 -0.02 2.44 16 40 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 42 H 0.16 2.85 7.16 -2.91 -0.02 2.83 16 43 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -52.95 374.32 5.58 -47.37 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.42 Total: 30.44 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 4.02 Total: 6.31 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -1.75 Total: -68.89 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -1.40 Total: -44.09 kcal Atomic # 9 Polarization: -12.89 SS G_CDS: 2.27 Total: -10.62 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -52.95 5.58 -47.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275184385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.659 kcal (2) G-P(sol) polarization free energy of solvation -52.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds