Wall clock time and date at job start Wed Apr 1 2020 03:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.70176 * 2 1 4 4 C 1.53197 * 109.58614 * 120.34781 * 2 1 3 5 5 H 1.08993 * 109.50087 * 294.41270 * 4 2 1 6 6 N 1.46498 * 109.49658 * 54.47408 * 4 2 1 7 7 C 1.34776 * 120.00328 * 204.99996 * 6 4 2 8 8 O 1.21622 * 119.99946 * 359.97438 * 7 6 4 9 9 C 1.47196 * 120.00324 * 180.02562 * 7 6 4 10 10 C 1.33786 * 124.65074 * 179.71961 * 9 7 6 11 11 C 1.40104 * 115.50374 * 179.78656 * 10 9 7 12 12 C 1.41713 * 129.99181 * 180.18895 * 11 10 9 13 13 C 1.36045 * 119.33578 * 180.33072 * 12 11 10 14 14 N 1.32301 * 121.58020 * 359.97438 * 13 12 11 15 15 C 1.31364 * 122.05438 * 0.02576 * 14 13 12 16 16 C 1.39727 * 120.60114 * 359.97283 * 15 14 13 17 17 S 1.75534 * 124.64835 * 0.02562 * 9 7 6 18 18 C 1.53105 * 109.32943 * 174.42023 * 4 2 1 19 19 C 1.53035 * 109.50550 * 298.66153 * 18 4 2 20 20 C 1.53194 * 109.34214 * 61.34877 * 19 18 4 21 21 N 1.46927 * 108.77142 * 305.34710 * 20 19 18 22 22 C 1.36934 * 120.63439 * 233.62876 * 21 20 19 23 23 H 1.07992 * 120.00406 * 150.15743 * 22 21 20 24 24 C 1.38819 * 119.99665 * 330.16273 * 22 21 20 25 25 N 1.31619 * 119.99679 * 344.49249 * 24 22 21 26 26 Si 1.86797 * 120.00224 * 164.49390 * 24 22 21 27 27 H 1.48505 * 109.47181 * 59.99637 * 26 24 22 28 28 H 1.48500 * 109.47177 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.46886 * 300.00021 * 26 24 22 30 30 H 1.09002 * 109.47024 * 180.35942 * 1 2 3 31 31 H 1.08996 * 109.47261 * 300.35754 * 1 2 3 32 32 H 1.08999 * 109.47155 * 60.36321 * 1 2 3 33 33 H 0.97007 * 120.00170 * 24.99644 * 6 4 2 34 34 H 1.08003 * 122.24760 * 359.97438 * 10 9 7 35 35 H 1.08002 * 120.33690 * 0.31647 * 12 11 10 36 36 H 1.07994 * 119.20943 * 180.02562 * 13 12 11 37 37 H 1.08005 * 119.69792 * 179.97438 * 15 14 13 38 38 H 1.09000 * 109.50193 * 178.63294 * 18 4 2 39 39 H 1.08999 * 109.44609 * 58.65810 * 18 4 2 40 40 H 1.09001 * 109.49992 * 301.38054 * 19 18 4 41 41 H 1.09003 * 109.49558 * 181.31470 * 19 18 4 42 42 H 1.08999 * 109.58643 * 65.13021 * 20 19 18 43 43 H 1.08998 * 109.58787 * 185.56166 * 20 19 18 44 44 H 0.97009 * 119.99606 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7292 1.2456 5 1 1.7655 -0.1670 2.1369 6 7 1.4514 -2.0678 1.3074 7 6 1.3284 -2.6962 2.4933 8 8 1.7093 -2.1522 3.5122 9 6 0.7339 -4.0414 2.5553 10 6 0.5722 -4.7505 3.6782 11 6 -0.0201 -6.0098 3.5164 12 6 -0.3348 -6.9990 4.4811 13 6 -0.9101 -8.1641 4.0779 14 7 -1.1843 -8.3971 2.8047 15 6 -0.9175 -7.5215 1.8625 16 6 -0.3265 -6.2953 2.1777 17 16 0.1471 -4.9382 1.1652 18 6 3.5681 -0.8482 1.1706 19 6 3.9569 -1.6657 -0.0633 20 6 3.4651 -0.9470 -1.3236 21 7 2.0226 -0.6997 -1.1944 22 6 1.1536 -1.1137 -2.1684 23 1 0.1398 -1.3809 -1.9095 24 6 1.5760 -1.1900 -3.4885 25 7 2.6866 -0.5891 -3.8599 26 14 0.5683 -2.1454 -4.7379 27 1 -0.7924 -1.5577 -4.8300 28 1 1.2290 -2.0735 -6.0659 29 1 0.4668 -3.5642 -4.3111 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5193 0.8867 32 1 -0.3633 0.5082 -0.8932 33 1 1.1479 -2.5019 0.4947 34 1 0.8750 -4.3760 4.6449 35 1 -0.1199 -6.8299 5.5259 36 1 -1.1494 -8.9163 4.8148 37 1 -1.1571 -7.7516 0.8348 38 1 3.9388 -1.3451 2.0671 39 1 4.0067 0.1472 1.0998 40 1 3.4983 -2.6528 -0.0050 41 1 5.0412 -1.7700 -0.1037 42 1 3.9903 0.0020 -1.4316 43 1 3.6518 -1.5719 -2.1970 44 1 2.9815 -0.6421 -4.7825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993453527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:26 Heat of formation + Delta-G solvation = 41.840718 kcal Electronic energy + Delta-G solvation = -28033.860679 eV Core-core repulsion = 24271.059503 eV Total energy + Delta-G solvation = -3762.801175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.68777 -39.88150 -37.84571 -36.15336 -34.07232 -32.55201 -31.85940 -31.71638 -30.69775 -29.38785 -26.50196 -25.31656 -24.99230 -24.24002 -22.51100 -21.55407 -20.87038 -20.25198 -18.89027 -18.73780 -17.04327 -16.69441 -16.47380 -16.18785 -15.37853 -15.16752 -15.00958 -14.73124 -14.52658 -14.17653 -14.09840 -13.94230 -13.58945 -13.28018 -13.11584 -13.08408 -12.65314 -12.21765 -12.05542 -11.91785 -11.35048 -11.32375 -11.06206 -11.02182 -10.77217 -10.69383 -10.60273 -10.23288 -10.19191 -10.09368 -10.01838 -9.91967 -9.74542 -9.39751 -9.30401 -8.69579 -8.53457 -8.12691 -6.74466 -5.87541 -3.33684 -0.02851 0.71457 1.10665 1.58140 1.77017 3.16694 3.26120 3.31436 3.37819 3.38854 3.47854 4.14475 4.31680 4.39798 4.48060 4.60858 4.86051 5.10453 5.22061 5.23753 5.26257 5.32160 5.47163 5.48598 5.54802 5.65418 5.80222 5.87437 5.91257 6.02744 6.14123 6.22858 6.24894 6.33209 6.44623 6.54611 6.59964 6.69544 6.84808 6.86975 6.97345 7.30815 7.59187 7.60671 7.71118 7.74202 8.29663 8.35905 9.11478 9.74112 10.31400 11.20453 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.003718 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.138552 B = 7528.424632 C = 9073.026489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.159 3.841 3 H 0.043 0.957 4 C 0.133 3.867 5 H 0.080 0.920 6 N -0.689 5.689 7 C 0.578 3.422 8 O -0.535 6.535 9 C -0.195 4.195 10 C -0.066 4.066 11 C -0.043 4.043 12 C -0.122 4.122 13 C 0.075 3.925 14 N -0.470 5.470 15 C 0.161 3.839 16 C -0.205 4.205 17 S 0.181 5.819 18 C -0.122 4.122 19 C -0.142 4.142 20 C 0.171 3.829 21 N -0.586 5.586 22 C -0.261 4.261 23 H 0.070 0.930 24 C 0.010 3.990 25 N -0.898 5.898 26 Si 0.898 3.102 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.066 0.934 33 H 0.408 0.592 34 H 0.158 0.842 35 H 0.141 0.859 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.019 0.981 43 H 0.086 0.914 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 -9.771 13.351 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.051 3.949 3 H 0.061 0.939 4 C 0.027 3.973 5 H 0.098 0.902 6 N -0.340 5.340 7 C 0.362 3.638 8 O -0.415 6.415 9 C -0.316 4.316 10 C -0.098 4.098 11 C -0.059 4.059 12 C -0.144 4.144 13 C -0.074 4.074 14 N -0.179 5.179 15 C -0.009 4.009 16 C -0.324 4.324 17 S 0.447 5.553 18 C -0.160 4.160 19 C -0.181 4.181 20 C 0.046 3.954 21 N -0.310 5.310 22 C -0.390 4.390 23 H 0.087 0.913 24 C -0.190 4.190 25 N -0.541 5.541 26 Si 0.728 3.272 27 H -0.208 1.208 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.245 0.755 34 H 0.176 0.824 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.182 0.818 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.038 0.962 43 H 0.104 0.896 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.443 -9.786 12.128 16.205 hybrid contribution -0.036 -0.149 0.598 0.617 sum -4.479 -9.934 12.726 16.755 Atomic orbital electron populations 1.21799 0.95564 1.01382 1.00722 1.20735 0.93413 0.94026 0.86700 0.93939 1.21689 0.93130 0.82155 1.00325 0.90167 1.45944 1.60798 1.18962 1.08264 1.17087 0.78944 0.83222 0.84549 1.90784 1.50378 1.66009 1.34299 1.24220 1.08750 1.00512 0.98082 1.20102 0.98012 0.91817 0.99891 1.18353 0.99684 0.95068 0.92772 1.21774 0.99312 0.93398 0.99906 1.22139 0.96336 0.96095 0.92856 1.67712 1.16942 1.31750 1.01531 1.22370 0.92650 0.86534 0.99393 1.24234 1.08033 1.01933 0.98198 1.84687 1.59300 1.05574 1.05758 1.21792 0.95111 1.00735 0.98371 1.22159 0.99122 0.99487 0.97318 1.20802 0.83135 0.97222 0.94253 1.44167 1.03143 1.64828 1.18849 1.19089 0.95219 1.38556 0.86180 0.91266 1.25099 0.97736 0.99178 0.96980 1.70013 1.23972 1.43267 1.16889 0.86451 0.79718 0.80273 0.80803 1.20813 1.21653 1.20850 0.92964 0.94077 0.91503 0.75464 0.82422 0.84106 0.82345 0.81831 0.93005 0.91572 0.92975 0.93259 0.96240 0.89560 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.74 37.16 0.29 -2.11 16 2 C 0.16 3.01 3.20 -67.60 -0.22 2.80 16 3 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.13 2.28 2.33 -67.78 -0.16 2.12 16 5 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 6 N -0.69 -11.40 3.45 -54.81 -0.19 -11.59 16 7 C 0.58 9.42 7.77 -12.62 -0.10 9.32 16 8 O -0.54 -9.90 16.39 5.26 0.09 -9.82 16 9 C -0.19 -2.72 6.33 -37.51 -0.24 -2.96 16 10 C -0.07 -0.81 9.81 -40.44 -0.40 -1.21 16 11 C -0.04 -0.49 5.91 -107.11 -0.63 -1.12 16 12 C -0.12 -1.11 10.13 -39.04 -0.40 -1.51 16 13 C 0.07 0.68 11.06 -18.14 -0.20 0.48 16 14 N -0.47 -5.21 10.34 -13.41 -0.14 -5.35 16 15 C 0.16 1.74 11.24 -17.20 -0.19 1.55 16 16 C -0.21 -2.42 6.54 -38.26 -0.25 -2.67 16 17 S 0.18 2.28 22.26 -107.50 -2.39 -0.11 16 18 C -0.12 -2.07 5.58 -26.66 -0.15 -2.22 16 19 C -0.14 -2.60 5.93 -26.61 -0.16 -2.76 16 20 C 0.17 3.79 5.28 -3.71 -0.02 3.77 16 21 N -0.59 -13.04 2.64 -164.77 -0.44 -13.48 16 22 C -0.26 -6.36 8.57 -15.06 -0.13 -6.49 16 23 H 0.07 1.63 6.24 -52.49 -0.33 1.31 16 24 C 0.01 0.25 4.94 -17.43 -0.09 0.16 16 25 N -0.90 -24.50 11.23 55.49 0.62 -23.88 16 26 Si 0.90 20.31 29.58 -169.99 -5.03 15.28 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.05 0.91 6.39 -51.93 -0.33 0.57 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.26 7.63 -51.93 -0.40 0.86 16 33 H 0.41 6.96 6.82 -40.82 -0.28 6.68 16 34 H 0.16 1.79 7.96 -52.48 -0.42 1.38 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.98 7.53 -51.93 -0.39 0.59 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 2.15 6.15 -51.93 -0.32 1.83 16 44 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -28.82 367.19 -10.77 -39.59 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.80 Total: 6.66 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -3.03 Total: -2.85 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.14 Total: -54.29 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.39 Total: -0.11 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.82 -10.77 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993453527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.432 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds