Wall clock time and date at job start Wed Apr 1 2020 03:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.70176 * 2 1 4 4 C 1.53197 * 109.58614 * 120.34781 * 2 1 3 5 5 H 1.08993 * 109.50087 * 294.41270 * 4 2 1 6 6 N 1.46498 * 109.49658 * 54.47408 * 4 2 1 7 7 C 1.34776 * 120.00328 * 204.99996 * 6 4 2 8 8 O 1.21622 * 119.99946 * 359.97438 * 7 6 4 9 9 C 1.47196 * 120.00324 * 180.02562 * 7 6 4 10 10 C 1.33786 * 124.65074 * 179.71961 * 9 7 6 11 11 C 1.40104 * 115.50374 * 179.78656 * 10 9 7 12 12 C 1.41713 * 129.99181 * 180.18895 * 11 10 9 13 13 C 1.36045 * 119.33578 * 180.33072 * 12 11 10 14 14 N 1.32301 * 121.58020 * 359.97438 * 13 12 11 15 15 C 1.31364 * 122.05438 * 0.02576 * 14 13 12 16 16 C 1.39727 * 120.60114 * 359.97283 * 15 14 13 17 17 S 1.75534 * 124.64835 * 0.02562 * 9 7 6 18 18 C 1.53105 * 109.32943 * 174.42023 * 4 2 1 19 19 C 1.53035 * 109.50550 * 298.66153 * 18 4 2 20 20 C 1.53194 * 109.34214 * 61.34877 * 19 18 4 21 21 N 1.46927 * 108.77142 * 305.34710 * 20 19 18 22 22 C 1.36934 * 120.63439 * 233.62876 * 21 20 19 23 23 H 1.07992 * 120.00406 * 150.15743 * 22 21 20 24 24 C 1.38819 * 119.99665 * 330.16273 * 22 21 20 25 25 N 1.31619 * 119.99679 * 344.49249 * 24 22 21 26 26 Si 1.86797 * 120.00224 * 164.49390 * 24 22 21 27 27 H 1.48505 * 109.47181 * 59.99637 * 26 24 22 28 28 H 1.48500 * 109.47177 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.46886 * 300.00021 * 26 24 22 30 30 H 1.09002 * 109.47024 * 180.35942 * 1 2 3 31 31 H 1.08996 * 109.47261 * 300.35754 * 1 2 3 32 32 H 1.08999 * 109.47155 * 60.36321 * 1 2 3 33 33 H 0.97007 * 120.00170 * 24.99644 * 6 4 2 34 34 H 1.08003 * 122.24760 * 359.97438 * 10 9 7 35 35 H 1.08002 * 120.33690 * 0.31647 * 12 11 10 36 36 H 1.07994 * 119.20943 * 180.02562 * 13 12 11 37 37 H 1.08005 * 119.69792 * 179.97438 * 15 14 13 38 38 H 1.09000 * 109.50193 * 178.63294 * 18 4 2 39 39 H 1.08999 * 109.44609 * 58.65810 * 18 4 2 40 40 H 1.09001 * 109.49992 * 301.38054 * 19 18 4 41 41 H 1.09003 * 109.49558 * 181.31470 * 19 18 4 42 42 H 1.08999 * 109.58643 * 65.13021 * 20 19 18 43 43 H 1.08998 * 109.58787 * 185.56166 * 20 19 18 44 44 H 0.97009 * 119.99606 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7292 1.2456 5 1 1.7655 -0.1670 2.1369 6 7 1.4514 -2.0678 1.3074 7 6 1.3284 -2.6962 2.4933 8 8 1.7093 -2.1522 3.5122 9 6 0.7339 -4.0414 2.5553 10 6 0.5722 -4.7505 3.6782 11 6 -0.0201 -6.0098 3.5164 12 6 -0.3348 -6.9990 4.4811 13 6 -0.9101 -8.1641 4.0779 14 7 -1.1843 -8.3971 2.8047 15 6 -0.9175 -7.5215 1.8625 16 6 -0.3265 -6.2953 2.1777 17 16 0.1471 -4.9382 1.1652 18 6 3.5681 -0.8482 1.1706 19 6 3.9569 -1.6657 -0.0633 20 6 3.4651 -0.9470 -1.3236 21 7 2.0226 -0.6997 -1.1944 22 6 1.1536 -1.1137 -2.1684 23 1 0.1398 -1.3809 -1.9095 24 6 1.5760 -1.1900 -3.4885 25 7 2.6866 -0.5891 -3.8599 26 14 0.5683 -2.1454 -4.7379 27 1 -0.7924 -1.5577 -4.8300 28 1 1.2290 -2.0735 -6.0659 29 1 0.4668 -3.5642 -4.3111 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5193 0.8867 32 1 -0.3633 0.5082 -0.8932 33 1 1.1479 -2.5019 0.4947 34 1 0.8750 -4.3760 4.6449 35 1 -0.1199 -6.8299 5.5259 36 1 -1.1494 -8.9163 4.8148 37 1 -1.1571 -7.7516 0.8348 38 1 3.9388 -1.3451 2.0671 39 1 4.0067 0.1472 1.0998 40 1 3.4983 -2.6528 -0.0050 41 1 5.0412 -1.7700 -0.1037 42 1 3.9903 0.0020 -1.4316 43 1 3.6518 -1.5719 -2.1970 44 1 2.9815 -0.6421 -4.7825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993453527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:25 Heat of formation + Delta-G solvation = 26.539837 kcal Electronic energy + Delta-G solvation = -28034.524175 eV Core-core repulsion = 24271.059503 eV Total energy + Delta-G solvation = -3763.464671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58340 -41.14657 -39.30091 -37.11710 -35.66967 -34.10562 -33.46293 -32.48401 -31.86405 -30.85273 -28.00789 -26.89534 -26.22807 -25.08632 -23.87388 -22.84009 -22.37997 -21.37004 -20.39994 -19.79151 -18.31125 -17.98052 -17.44368 -17.35130 -16.93476 -16.46095 -16.36027 -15.77198 -15.59494 -15.49127 -15.42330 -15.06601 -14.87976 -14.73648 -14.59800 -14.26668 -14.06598 -13.57302 -13.18150 -12.97861 -12.87983 -12.87163 -12.70266 -12.46462 -12.36380 -12.20895 -11.97289 -11.93930 -11.69500 -11.42001 -11.26519 -11.05068 -11.02920 -10.75936 -10.48366 -10.31206 -9.99180 -9.00580 -8.60788 -7.81553 -5.28383 -0.95969 -0.05044 0.17025 0.65507 0.83012 1.51002 1.52885 1.57925 1.98148 2.03735 2.54454 2.68968 3.34807 3.37902 3.49511 3.58113 3.59964 3.81808 3.83479 3.98503 4.03227 4.18419 4.32327 4.37279 4.47473 4.53681 4.58805 4.64275 4.65262 4.74811 4.92713 4.94700 4.97892 5.00996 5.07736 5.09486 5.19330 5.32552 5.42116 5.50355 5.53516 5.57124 5.74362 5.79276 6.42340 6.44902 6.84044 7.00750 7.20240 7.89553 8.42873 9.24932 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.003718 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.138552 B = 7528.424632 C = 9073.026489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.156 3.844 3 H 0.038 0.962 4 C 0.141 3.859 5 H 0.088 0.912 6 N -0.690 5.690 7 C 0.583 3.417 8 O -0.561 6.561 9 C -0.221 4.221 10 C -0.047 4.047 11 C -0.060 4.060 12 C -0.112 4.112 13 C 0.073 3.927 14 N -0.482 5.482 15 C 0.151 3.849 16 C -0.208 4.208 17 S 0.166 5.834 18 C -0.116 4.116 19 C -0.128 4.128 20 C 0.179 3.821 21 N -0.597 5.597 22 C -0.251 4.251 23 H 0.078 0.922 24 C -0.044 4.044 25 N -0.934 5.934 26 Si 0.953 3.047 27 H -0.277 1.277 28 H -0.302 1.302 29 H -0.274 1.274 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.406 0.594 34 H 0.168 0.832 35 H 0.174 0.826 36 H 0.193 0.807 37 H 0.180 0.820 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.063 0.937 42 H -0.002 1.002 43 H 0.054 0.946 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 -11.508 15.714 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.049 3.951 3 H 0.055 0.945 4 C 0.035 3.965 5 H 0.106 0.894 6 N -0.340 5.340 7 C 0.369 3.631 8 O -0.442 6.442 9 C -0.342 4.342 10 C -0.080 4.080 11 C -0.076 4.076 12 C -0.133 4.133 13 C -0.077 4.077 14 N -0.192 5.192 15 C -0.019 4.019 16 C -0.327 4.327 17 S 0.432 5.568 18 C -0.154 4.154 19 C -0.167 4.167 20 C 0.054 3.946 21 N -0.321 5.321 22 C -0.381 4.381 23 H 0.096 0.904 24 C -0.240 4.240 25 N -0.580 5.580 26 Si 0.782 3.218 27 H -0.203 1.203 28 H -0.229 1.229 29 H -0.200 1.200 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.243 0.757 34 H 0.185 0.815 35 H 0.191 0.809 36 H 0.210 0.790 37 H 0.197 0.803 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.016 0.984 43 H 0.073 0.927 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.647 -11.531 14.510 19.375 hybrid contribution 0.282 0.307 0.009 0.417 sum -5.366 -11.224 14.519 19.120 Atomic orbital electron populations 1.21722 0.94309 1.01550 1.01144 1.20863 0.94482 0.93656 0.86054 0.94478 1.21505 0.93118 0.82574 0.99310 0.89360 1.45899 1.60944 1.18689 1.08445 1.17278 0.78232 0.83803 0.83814 1.90761 1.51603 1.66945 1.34861 1.23957 1.11024 1.00000 0.99189 1.20291 0.96227 0.91745 0.99769 1.18558 1.00324 0.95345 0.93331 1.22154 0.97763 0.92360 1.01045 1.22746 0.95312 0.96841 0.92761 1.67777 1.17034 1.31895 1.02498 1.22657 0.92722 0.86211 1.00351 1.24315 1.08259 1.01882 0.98201 1.84646 1.59993 1.06349 1.05855 1.21745 0.95133 1.00897 0.97645 1.21970 0.99882 0.98872 0.95983 1.20576 0.83303 0.95873 0.94882 1.44334 1.02966 1.65411 1.19370 1.19411 0.95600 1.36654 0.86442 0.90439 1.25736 0.98844 1.00646 0.98735 1.70166 1.25806 1.45424 1.16554 0.85562 0.78427 0.79509 0.78312 1.20293 1.22897 1.20023 0.92912 0.91514 0.93157 0.75744 0.81459 0.80872 0.79033 0.80321 0.92341 0.90870 0.93324 0.91789 0.98399 0.92729 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 7.74 71.98 0.56 -3.85 16 2 C 0.16 5.85 3.20 44.98 0.14 5.99 16 3 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 4 C 0.14 4.69 2.33 45.09 0.10 4.79 16 5 H 0.09 2.85 7.58 -2.39 -0.02 2.83 16 6 N -0.69 -22.24 3.45 -445.56 -1.54 -23.78 16 7 C 0.58 18.41 7.77 86.60 0.67 19.08 16 8 O -0.56 -20.02 16.39 -4.10 -0.07 -20.09 16 9 C -0.22 -5.95 6.33 23.61 0.15 -5.80 16 10 C -0.05 -1.09 9.81 21.71 0.21 -0.87 16 11 C -0.06 -1.24 5.91 -21.48 -0.13 -1.37 16 12 C -0.11 -1.64 10.13 22.62 0.23 -1.41 16 13 C 0.07 1.07 11.06 84.11 0.93 2.00 16 14 N -0.48 -9.46 10.34 -196.33 -2.03 -11.49 16 15 C 0.15 2.99 11.24 85.12 0.96 3.95 16 16 C -0.21 -4.58 6.54 23.12 0.15 -4.43 16 17 S 0.17 4.07 22.26 -56.49 -1.26 2.81 16 18 C -0.12 -3.82 5.58 30.64 0.17 -3.65 16 19 C -0.13 -4.66 5.93 30.67 0.18 -4.48 16 20 C 0.18 8.11 5.28 86.36 0.46 8.56 16 21 N -0.60 -26.80 2.64 -675.22 -1.78 -28.58 16 22 C -0.25 -12.31 8.57 84.04 0.72 -11.59 16 23 H 0.08 3.62 6.24 -2.91 -0.02 3.61 16 24 C -0.04 -2.29 4.94 84.86 0.42 -1.87 16 25 N -0.93 -52.63 11.23 21.65 0.24 -52.38 16 26 Si 0.95 42.33 29.58 68.60 2.03 44.36 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 30 H 0.05 1.77 6.39 -2.39 -0.02 1.76 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.86 7.63 -2.39 -0.02 1.84 16 33 H 0.41 13.63 6.82 -92.70 -0.63 13.00 16 34 H 0.17 3.43 7.96 -2.91 -0.02 3.41 16 35 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 36 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.18 2.78 8.06 -2.91 -0.02 2.75 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.05 1.80 7.53 -2.39 -0.02 1.79 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.05 2.82 6.15 -2.39 -0.01 2.81 16 44 H 0.25 13.74 8.31 -92.70 -0.77 12.96 16 Total: -1.00 -62.46 367.19 1.93 -60.53 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.41 Total: 23.57 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 5.93 Total: 5.06 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -5.11 Total: -116.24 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.07 Total: -20.09 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.26 Total: 2.81 kcal Total: -62.46 1.93 -60.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993453527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.067 kcal (2) G-P(sol) polarization free energy of solvation -62.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds