Wall clock time and date at job start Wed Apr 1 2020 03:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34770 * 120.00390 * 2 1 4 4 O 1.21594 * 120.00423 * 184.80280 * 3 2 1 5 5 C 1.47560 * 119.99915 * 4.80597 * 3 2 1 6 6 C 1.40115 * 120.59156 * 22.67353 * 5 3 2 7 7 N 1.30608 * 121.17860 * 179.97438 * 6 5 3 8 8 C 1.34915 * 122.44135 * 359.97438 * 7 6 5 9 9 C 1.40620 * 128.45653 * 180.02562 * 8 7 6 10 10 C 1.32278 * 115.90877 * 180.02562 * 9 8 7 11 11 S 1.75506 * 110.83690 * 359.97438 * 10 9 8 12 12 C 1.40092 * 119.27489 * 0.02562 * 8 7 6 13 13 C 1.39371 * 119.74931 * 359.73772 * 12 8 7 14 14 C 1.46506 * 119.99637 * 179.97438 * 2 1 3 15 15 C 1.53076 * 109.45292 * 299.78915 * 14 2 1 16 16 C 1.53187 * 109.29513 * 181.24497 * 15 14 2 17 17 N 1.46923 * 108.89386 * 305.57685 * 16 15 14 18 18 C 1.36935 * 120.63279 * 233.51516 * 17 16 15 19 19 H 1.08002 * 120.00023 * 146.89392 * 18 17 16 20 20 C 1.38807 * 120.00066 * 326.89855 * 18 17 16 21 21 N 1.31617 * 120.00030 * 341.82807 * 20 18 17 22 22 Si 1.86805 * 120.00169 * 161.83276 * 20 18 17 23 23 H 1.48496 * 109.47200 * 89.99453 * 22 20 18 24 24 H 1.48500 * 109.47364 * 209.99887 * 22 20 18 25 25 H 1.48504 * 109.46860 * 330.00097 * 22 20 18 26 26 C 1.46927 * 118.73601 * 53.54018 * 17 16 15 27 27 C 1.53036 * 109.46027 * 60.00026 * 14 2 1 28 28 H 1.09000 * 109.47297 * 263.87674 * 1 2 3 29 29 H 1.09005 * 109.46738 * 23.87508 * 1 2 3 30 30 H 1.08998 * 109.47339 * 143.87102 * 1 2 3 31 31 H 1.08005 * 119.41074 * 359.95674 * 6 5 3 32 32 H 1.08003 * 122.04493 * 359.97438 * 9 8 7 33 33 H 1.08006 * 124.58142 * 179.97438 * 10 9 8 34 34 H 1.07995 * 120.72838 * 180.28320 * 13 12 8 35 35 H 1.08997 * 109.45868 * 179.97438 * 14 2 1 36 36 H 1.09009 * 109.38821 * 61.36826 * 15 14 2 37 37 H 1.09000 * 109.62216 * 301.26241 * 15 14 2 38 38 H 1.09003 * 109.58671 * 185.72026 * 16 15 14 39 39 H 1.08994 * 109.58897 * 65.43650 * 16 15 14 40 40 H 0.96999 * 120.00109 * 179.97438 * 21 20 18 41 41 H 1.08991 * 109.59158 * 66.17800 * 26 17 16 42 42 H 1.09006 * 109.58331 * 186.46224 * 26 17 16 43 43 H 1.09001 * 109.49554 * 58.66630 * 27 14 2 44 44 H 1.08997 * 109.50284 * 298.56645 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3517 1.1690 -0.0882 5 6 1.4051 2.4428 0.1071 6 6 0.1221 2.4824 0.6687 7 7 -0.5375 3.6052 0.7696 8 6 -0.0321 4.7821 0.3457 9 6 -0.6255 6.0561 0.3920 10 6 0.0984 7.0490 -0.0979 11 16 1.6457 6.4635 -0.6838 12 6 1.2465 4.8124 -0.2259 13 6 1.9794 3.6328 -0.3440 14 6 2.1975 -1.2688 0.0006 15 6 1.8313 -2.0683 1.2536 16 6 2.6224 -3.3800 1.2662 17 7 2.3848 -4.0911 0.0026 18 6 1.9517 -5.3902 0.0038 19 1 1.2958 -5.7414 -0.7790 20 6 2.3558 -6.2555 1.0111 21 7 3.4071 -5.9635 1.7471 22 14 1.4074 -7.8346 1.3221 23 1 1.9799 -8.9269 0.4950 24 1 1.5070 -8.1972 2.7587 25 1 -0.0189 -7.6349 0.9597 26 6 2.6212 -3.3819 -1.2623 27 6 1.8276 -2.0716 -1.2487 28 1 -0.3634 -0.1096 1.0218 29 1 -0.3633 0.9398 -0.4160 30 1 -0.3634 -0.8300 -0.6059 31 1 -0.3297 1.5681 1.0244 32 1 -1.6121 6.2142 0.8019 33 1 -0.2199 8.0805 -0.1328 34 1 2.9683 3.6387 -0.7780 35 1 3.2691 -1.0695 0.0000 36 1 0.7635 -2.2874 1.2438 37 1 2.0759 -1.4874 2.1429 38 1 2.2918 -3.9981 2.1010 39 1 3.6858 -3.1645 1.3698 40 1 3.6892 -6.5681 2.4513 41 1 3.6841 -3.1643 -1.3661 42 1 2.2921 -4.0023 -2.0960 43 1 2.0689 -1.4909 -2.1390 44 1 0.7603 -2.2928 -1.2363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005815492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:09 Heat of formation + Delta-G solvation = 71.239014 kcal Electronic energy + Delta-G solvation = -27402.392506 eV Core-core repulsion = 23640.866136 eV Total energy + Delta-G solvation = -3761.526370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.18735 -39.66007 -37.48582 -36.16921 -35.22304 -32.86996 -32.61413 -30.77748 -30.02745 -29.31327 -27.39374 -25.70654 -24.71202 -24.03760 -22.37511 -22.21243 -21.46472 -20.07256 -19.01669 -18.39210 -17.32388 -17.18510 -16.68144 -16.14059 -16.04812 -15.33226 -14.89699 -14.64165 -14.53278 -14.24882 -13.82054 -13.68803 -13.59636 -13.43647 -13.08283 -12.98287 -12.96459 -12.67562 -12.39074 -12.22891 -11.59194 -11.52214 -11.48642 -11.21393 -10.86554 -10.82309 -10.73282 -10.45327 -10.24143 -10.18704 -10.11093 -9.82385 -9.66441 -9.52761 -9.10149 -8.57894 -8.46072 -8.36970 -6.64632 -5.82482 -3.28754 -0.17716 0.67077 0.94241 1.41208 1.54880 2.75319 2.94952 3.35537 3.43007 3.44822 3.45032 3.68499 4.19513 4.26697 4.42180 4.47335 4.62589 4.77884 4.91910 5.07958 5.24606 5.26797 5.27787 5.36224 5.41414 5.47559 5.54536 5.57121 5.63150 5.69265 5.81408 6.02371 6.04012 6.18585 6.26575 6.44316 6.51674 6.56982 6.75421 6.81485 6.93698 7.25105 7.38156 7.40945 7.55431 7.79379 8.10734 8.44873 9.18068 9.80465 10.40928 11.26061 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.032182 B = 0.002134 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.853894 B =13116.777005 C =13472.281998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.598 5.598 3 C 0.561 3.439 4 O -0.534 6.534 5 C -0.172 4.172 6 C 0.137 3.863 7 N -0.461 5.461 8 C 0.141 3.859 9 C -0.118 4.118 10 C -0.168 4.168 11 S 0.122 5.878 12 C -0.211 4.211 13 C 0.026 3.974 14 C 0.146 3.854 15 C -0.146 4.146 16 C 0.177 3.823 17 N -0.590 5.590 18 C -0.260 4.260 19 H 0.063 0.937 20 C 0.009 3.991 21 N -0.896 5.896 22 Si 0.899 3.101 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.148 3.852 27 C -0.138 4.138 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.190 0.810 32 H 0.155 0.845 33 H 0.178 0.822 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.255 0.745 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 25.334 -3.843 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.329 5.329 3 C 0.348 3.652 4 O -0.411 6.411 5 C -0.181 4.181 6 C -0.034 4.034 7 N -0.170 5.170 8 C 0.007 3.993 9 C -0.149 4.149 10 C -0.304 4.304 11 S 0.385 5.615 12 C -0.328 4.328 13 C -0.004 4.004 14 C 0.045 3.955 15 C -0.186 4.186 16 C 0.051 3.949 17 N -0.313 5.313 18 C -0.389 4.389 19 H 0.081 0.919 20 C -0.191 4.191 21 N -0.539 5.539 22 Si 0.729 3.271 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.204 1.204 26 C 0.021 3.979 27 C -0.178 4.178 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.206 0.794 32 H 0.172 0.828 33 H 0.195 0.805 34 H 0.169 0.831 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.324 26.051 -4.066 27.365 hybrid contribution -0.904 -1.444 0.563 1.794 sum -8.228 24.608 -3.503 26.182 Atomic orbital electron populations 1.22435 0.80394 1.03678 1.02158 1.48025 1.06872 1.06231 1.71797 1.17881 0.86991 0.83076 0.77238 1.90802 1.13334 1.86967 1.50043 1.20958 0.97228 0.94687 1.05220 1.24026 0.89998 0.96635 0.92716 1.67718 1.35620 0.97060 1.16577 1.19314 0.90299 0.93445 0.96260 1.19662 1.02400 0.89384 1.03426 1.25438 0.97664 1.03690 1.03642 1.84370 1.16858 0.96439 1.63847 1.23533 1.00372 0.99445 1.09478 1.20969 0.98657 0.88403 0.92329 1.21273 0.97313 0.80387 0.96564 1.22571 1.01786 0.98900 0.95311 1.20647 0.95475 0.88615 0.90192 1.44019 1.77915 1.10128 0.99207 1.19070 1.22466 0.86032 1.11373 0.91945 1.25170 0.95887 0.97472 1.00581 1.70054 1.22986 1.37845 1.23044 0.86364 0.79967 0.83530 0.77263 1.21303 1.21542 1.20395 1.20878 0.95795 0.90795 0.90479 1.22373 1.01460 0.98124 0.95878 0.91457 0.90165 0.90001 0.79380 0.82760 0.80455 0.83132 0.88439 0.92207 0.92913 0.90243 0.95910 0.93553 0.96187 0.92364 0.92833 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 7.80 59.85 0.47 1.05 16 2 N -0.60 -8.43 2.76 -175.08 -0.48 -8.91 16 3 C 0.56 8.43 7.52 -12.46 -0.09 8.33 16 4 O -0.53 -9.87 15.96 5.28 0.08 -9.78 16 5 C -0.17 -2.15 5.55 -104.87 -0.58 -2.73 16 6 C 0.14 1.52 8.72 -17.37 -0.15 1.37 16 7 N -0.46 -5.40 10.39 -11.01 -0.11 -5.52 16 8 C 0.14 1.53 6.97 -84.92 -0.59 0.94 16 9 C -0.12 -0.95 10.16 -40.61 -0.41 -1.36 16 10 C -0.17 -1.04 11.08 28.81 0.32 -0.72 16 11 S 0.12 0.94 23.29 -107.50 -2.50 -1.56 16 12 C -0.21 -2.25 6.49 -38.47 -0.25 -2.50 16 13 C 0.03 0.31 9.73 -38.64 -0.38 -0.07 16 14 C 0.15 2.48 2.47 -67.87 -0.17 2.32 16 15 C -0.15 -2.65 5.36 -26.60 -0.14 -2.80 16 16 C 0.18 4.11 5.28 -3.71 -0.02 4.09 16 17 N -0.59 -14.41 2.96 -172.33 -0.51 -14.92 16 18 C -0.26 -6.97 9.51 -15.06 -0.14 -7.11 16 19 H 0.06 1.65 7.89 -52.49 -0.41 1.23 16 20 C 0.01 0.24 4.84 -17.43 -0.08 0.16 16 21 N -0.90 -25.82 11.67 55.49 0.65 -25.17 16 22 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.15 3.05 6.52 -3.71 -0.02 3.02 16 27 C -0.14 -2.34 5.29 -26.61 -0.14 -2.48 16 28 H 0.07 0.60 7.22 -51.93 -0.38 0.23 16 29 H 0.08 0.71 4.94 -51.93 -0.26 0.46 16 30 H 0.08 0.85 6.49 -51.93 -0.34 0.51 16 31 H 0.19 1.71 4.24 -52.48 -0.22 1.49 16 32 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.18 0.51 8.06 -52.48 -0.42 0.09 16 34 H 0.15 1.67 7.87 -52.49 -0.41 1.25 16 35 H 0.10 1.90 6.91 -51.93 -0.36 1.54 16 36 H 0.06 1.05 7.72 -51.92 -0.40 0.65 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 2.04 6.50 -51.93 -0.34 1.70 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.06 1.02 6.77 -51.93 -0.35 0.67 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -32.25 362.72 -10.39 -42.63 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.55 Total: 0.02 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.39 Total: 1.51 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.46 Total: -54.52 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.25 -10.39 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005815492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.874 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds