Wall clock time and date at job start Wed Apr 1 2020 03:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34770 * 120.00390 * 2 1 4 4 O 1.21594 * 120.00423 * 184.80280 * 3 2 1 5 5 C 1.47560 * 119.99915 * 4.80597 * 3 2 1 6 6 C 1.40115 * 120.59156 * 22.67353 * 5 3 2 7 7 N 1.30608 * 121.17860 * 179.97438 * 6 5 3 8 8 C 1.34915 * 122.44135 * 359.97438 * 7 6 5 9 9 C 1.40620 * 128.45653 * 180.02562 * 8 7 6 10 10 C 1.32278 * 115.90877 * 180.02562 * 9 8 7 11 11 S 1.75506 * 110.83690 * 359.97438 * 10 9 8 12 12 C 1.40092 * 119.27489 * 0.02562 * 8 7 6 13 13 C 1.39371 * 119.74931 * 359.73772 * 12 8 7 14 14 C 1.46506 * 119.99637 * 179.97438 * 2 1 3 15 15 C 1.53076 * 109.45292 * 299.78915 * 14 2 1 16 16 C 1.53187 * 109.29513 * 181.24497 * 15 14 2 17 17 N 1.46923 * 108.89386 * 305.57685 * 16 15 14 18 18 C 1.36935 * 120.63279 * 233.51516 * 17 16 15 19 19 H 1.08002 * 120.00023 * 146.89392 * 18 17 16 20 20 C 1.38807 * 120.00066 * 326.89855 * 18 17 16 21 21 N 1.31617 * 120.00030 * 341.82807 * 20 18 17 22 22 Si 1.86805 * 120.00169 * 161.83276 * 20 18 17 23 23 H 1.48496 * 109.47200 * 89.99453 * 22 20 18 24 24 H 1.48500 * 109.47364 * 209.99887 * 22 20 18 25 25 H 1.48504 * 109.46860 * 330.00097 * 22 20 18 26 26 C 1.46927 * 118.73601 * 53.54018 * 17 16 15 27 27 C 1.53036 * 109.46027 * 60.00026 * 14 2 1 28 28 H 1.09000 * 109.47297 * 263.87674 * 1 2 3 29 29 H 1.09005 * 109.46738 * 23.87508 * 1 2 3 30 30 H 1.08998 * 109.47339 * 143.87102 * 1 2 3 31 31 H 1.08005 * 119.41074 * 359.95674 * 6 5 3 32 32 H 1.08003 * 122.04493 * 359.97438 * 9 8 7 33 33 H 1.08006 * 124.58142 * 179.97438 * 10 9 8 34 34 H 1.07995 * 120.72838 * 180.28320 * 13 12 8 35 35 H 1.08997 * 109.45868 * 179.97438 * 14 2 1 36 36 H 1.09009 * 109.38821 * 61.36826 * 15 14 2 37 37 H 1.09000 * 109.62216 * 301.26241 * 15 14 2 38 38 H 1.09003 * 109.58671 * 185.72026 * 16 15 14 39 39 H 1.08994 * 109.58897 * 65.43650 * 16 15 14 40 40 H 0.96999 * 120.00109 * 179.97438 * 21 20 18 41 41 H 1.08991 * 109.59158 * 66.17800 * 26 17 16 42 42 H 1.09006 * 109.58331 * 186.46224 * 26 17 16 43 43 H 1.09001 * 109.49554 * 58.66630 * 27 14 2 44 44 H 1.08997 * 109.50284 * 298.56645 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3517 1.1690 -0.0882 5 6 1.4051 2.4428 0.1071 6 6 0.1221 2.4824 0.6687 7 7 -0.5375 3.6052 0.7696 8 6 -0.0321 4.7821 0.3457 9 6 -0.6255 6.0561 0.3920 10 6 0.0984 7.0490 -0.0979 11 16 1.6457 6.4635 -0.6838 12 6 1.2465 4.8124 -0.2259 13 6 1.9794 3.6328 -0.3440 14 6 2.1975 -1.2688 0.0006 15 6 1.8313 -2.0683 1.2536 16 6 2.6224 -3.3800 1.2662 17 7 2.3848 -4.0911 0.0026 18 6 1.9517 -5.3902 0.0038 19 1 1.2958 -5.7414 -0.7790 20 6 2.3558 -6.2555 1.0111 21 7 3.4071 -5.9635 1.7471 22 14 1.4074 -7.8346 1.3221 23 1 1.9799 -8.9269 0.4950 24 1 1.5070 -8.1972 2.7587 25 1 -0.0189 -7.6349 0.9597 26 6 2.6212 -3.3819 -1.2623 27 6 1.8276 -2.0716 -1.2487 28 1 -0.3634 -0.1096 1.0218 29 1 -0.3633 0.9398 -0.4160 30 1 -0.3634 -0.8300 -0.6059 31 1 -0.3297 1.5681 1.0244 32 1 -1.6121 6.2142 0.8019 33 1 -0.2199 8.0805 -0.1328 34 1 2.9683 3.6387 -0.7780 35 1 3.2691 -1.0695 0.0000 36 1 0.7635 -2.2874 1.2438 37 1 2.0759 -1.4874 2.1429 38 1 2.2918 -3.9981 2.1010 39 1 3.6858 -3.1645 1.3698 40 1 3.6892 -6.5681 2.4513 41 1 3.6841 -3.1643 -1.3661 42 1 2.2921 -4.0023 -2.0960 43 1 2.0689 -1.4909 -2.1390 44 1 0.7603 -2.2928 -1.2363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005815492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:08 Heat of formation + Delta-G solvation = 51.874857 kcal Electronic energy + Delta-G solvation = -27403.232199 eV Core-core repulsion = 23640.866136 eV Total energy + Delta-G solvation = -3762.366062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.11798 -40.72974 -39.00583 -37.03948 -36.51288 -34.36411 -33.68793 -32.23610 -31.61024 -30.56011 -28.37905 -27.17262 -25.87645 -24.96258 -23.92108 -23.70912 -22.34007 -21.27037 -20.50112 -19.28857 -18.71533 -18.20979 -17.85059 -17.27023 -17.00854 -16.72575 -16.38211 -15.78566 -15.53982 -15.42005 -15.17399 -14.97614 -14.79347 -14.52742 -14.38564 -14.30741 -14.05691 -13.84075 -13.70461 -13.16868 -13.07640 -12.99596 -12.63864 -12.50853 -12.42463 -12.15289 -12.08587 -12.00837 -11.88986 -11.64317 -11.50480 -11.38098 -11.13483 -10.58182 -10.55713 -9.88915 -9.67660 -9.07113 -8.65438 -7.88588 -5.38586 -0.95766 -0.14594 0.28341 0.81299 0.84455 1.48112 1.49807 1.59752 1.73367 1.82151 2.51811 2.58346 2.96818 3.27104 3.28685 3.48930 3.60225 3.65608 3.82292 3.93742 4.02391 4.03596 4.17960 4.31399 4.38465 4.45834 4.53035 4.60846 4.64354 4.68170 4.71447 4.85185 4.88236 4.90964 5.03182 5.05151 5.06512 5.13960 5.27049 5.29485 5.40703 5.50056 5.63583 5.68049 6.26932 6.40747 6.60024 6.95847 7.14226 7.82651 8.39250 9.18179 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.032182 B = 0.002134 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.853894 B =13116.777005 C =13472.281998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.594 5.594 3 C 0.562 3.438 4 O -0.579 6.579 5 C -0.190 4.190 6 C 0.143 3.857 7 N -0.476 5.476 8 C 0.132 3.868 9 C -0.141 4.141 10 C -0.139 4.139 11 S 0.141 5.859 12 C -0.234 4.234 13 C 0.023 3.977 14 C 0.156 3.844 15 C -0.127 4.127 16 C 0.184 3.816 17 N -0.606 5.606 18 C -0.266 4.266 19 H 0.068 0.932 20 C -0.046 4.046 21 N -0.934 5.934 22 Si 0.967 3.033 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.143 3.857 27 C -0.122 4.122 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.208 0.792 32 H 0.173 0.827 33 H 0.218 0.782 34 H 0.147 0.853 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.050 0.950 39 H -0.009 1.009 40 H 0.250 0.750 41 H 0.005 0.995 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.343 27.761 -4.468 30.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.324 5.324 3 C 0.351 3.649 4 O -0.460 6.460 5 C -0.198 4.198 6 C -0.028 4.028 7 N -0.185 5.185 8 C -0.002 4.002 9 C -0.170 4.170 10 C -0.275 4.275 11 S 0.404 5.596 12 C -0.351 4.351 13 C -0.006 4.006 14 C 0.053 3.947 15 C -0.167 4.167 16 C 0.058 3.942 17 N -0.330 5.330 18 C -0.396 4.396 19 H 0.086 0.914 20 C -0.242 4.242 21 N -0.579 5.579 22 Si 0.794 3.206 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.190 1.190 26 C 0.017 3.983 27 C -0.161 4.161 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.224 0.776 32 H 0.191 0.809 33 H 0.235 0.765 34 H 0.165 0.835 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.009 0.991 40 H 0.059 0.941 41 H 0.023 0.977 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.287 28.508 -4.720 30.673 hybrid contribution 0.048 -2.011 0.690 2.127 sum -10.239 26.497 -4.030 28.691 Atomic orbital electron populations 1.22742 0.77665 1.05028 1.03818 1.47906 1.08372 1.04784 1.71342 1.18242 0.86532 0.83976 0.76176 1.90775 1.15376 1.87629 1.52249 1.20697 0.98030 0.93481 1.07593 1.24232 0.89235 0.97297 0.92022 1.67770 1.35906 0.97488 1.17300 1.19853 0.90517 0.94261 0.95545 1.19872 1.03665 0.88469 1.05005 1.25955 0.95925 1.05099 1.00559 1.84383 1.17768 0.94284 1.63141 1.23730 1.00594 1.00581 1.10214 1.21037 0.98640 0.88949 0.92021 1.20865 0.96179 0.81684 0.95983 1.22294 1.01567 0.96363 0.96490 1.20423 0.94290 0.90413 0.89082 1.44274 1.78054 1.10034 1.00594 1.19432 1.21947 0.87040 1.11201 0.91435 1.25961 0.96743 1.00771 1.00751 1.70211 1.24764 1.39113 1.23793 0.85307 0.79137 0.79593 0.76549 1.21228 1.22030 1.19011 1.21001 0.95667 0.92487 0.89113 1.22161 1.01534 0.95980 0.96459 0.89426 0.88328 0.89355 0.77619 0.80939 0.76516 0.83506 0.91441 0.90653 0.92048 0.93171 0.99138 0.94069 0.97732 0.91851 0.91136 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.88 7.80 127.77 1.00 1.88 16 2 N -0.59 -16.14 2.76 -826.09 -2.28 -18.42 16 3 C 0.56 16.91 7.52 86.70 0.65 17.56 16 4 O -0.58 -22.23 15.96 -4.01 -0.06 -22.29 16 5 C -0.19 -4.64 5.55 -20.03 -0.11 -4.75 16 6 C 0.14 2.95 8.72 85.33 0.74 3.69 16 7 N -0.48 -10.31 10.39 -188.73 -1.96 -12.28 16 8 C 0.13 2.64 6.97 39.70 0.28 2.92 16 9 C -0.14 -1.83 10.16 21.79 0.22 -1.61 16 10 C -0.14 -1.19 11.08 66.76 0.74 -0.45 16 11 S 0.14 1.84 23.29 -56.49 -1.32 0.53 16 12 C -0.23 -4.69 6.49 22.99 0.15 -4.54 16 13 C 0.02 0.54 9.73 22.88 0.22 0.77 16 14 C 0.16 5.28 2.47 45.03 0.11 5.39 16 15 C -0.13 -4.63 5.36 30.68 0.16 -4.46 16 16 C 0.18 8.88 5.28 86.36 0.46 9.34 16 17 N -0.61 -30.15 2.96 -699.12 -2.07 -32.22 16 18 C -0.27 -14.38 9.51 84.03 0.80 -13.58 16 19 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 20 C -0.05 -2.56 4.84 84.86 0.41 -2.14 16 21 N -0.93 -55.67 11.67 21.65 0.25 -55.41 16 22 Si 0.97 44.17 29.59 68.60 2.03 46.20 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 C 0.14 5.97 6.52 86.36 0.56 6.54 16 27 C -0.12 -3.98 5.29 30.67 0.16 -3.82 16 28 H 0.09 1.28 7.22 -2.39 -0.02 1.26 16 29 H 0.10 1.48 4.94 -2.38 -0.01 1.47 16 30 H 0.09 1.54 6.49 -2.39 -0.02 1.52 16 31 H 0.21 3.25 4.24 -2.91 -0.01 3.24 16 32 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.22 0.07 8.06 -2.91 -0.02 0.05 16 34 H 0.15 3.38 7.87 -2.91 -0.02 3.36 16 35 H 0.07 2.73 6.91 -2.39 -0.02 2.72 16 36 H 0.07 2.53 7.72 -2.38 -0.02 2.51 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 2.68 6.50 -2.39 -0.02 2.67 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.06 2.54 7.93 -2.38 -0.02 2.52 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.08 2.36 6.77 -2.39 -0.02 2.34 16 Total: -1.00 -72.94 362.72 2.19 -70.75 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.04 Total: 10.42 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 6.56 Total: 12.73 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -6.06 Total: -118.33 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.32 Total: 0.53 kcal Total: -72.94 2.19 -70.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005815492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.628 kcal (2) G-P(sol) polarization free energy of solvation -72.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds