Wall clock time and date at job start Wed Apr 1 2020 03:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49875 * 2 1 4 4 C 1.53190 * 109.49754 * 239.93500 * 2 1 3 5 5 N 1.46922 * 108.77895 * 185.38054 * 4 2 1 6 6 C 1.34775 * 120.63327 * 233.58574 * 5 4 2 7 7 O 1.21573 * 119.99818 * 5.86115 * 6 5 4 8 8 C 1.47664 * 119.99881 * 185.86355 * 6 5 4 9 9 C 1.40162 * 119.85289 * 222.16524 * 8 6 5 10 10 C 1.36210 * 120.07800 * 180.25701 * 9 8 6 11 11 C 1.39578 * 120.43597 * 359.49131 * 10 9 8 12 12 S 1.76154 * 131.53533 * 180.22802 * 11 10 9 13 13 C 1.70633 * 90.85530 * 180.23575 * 12 11 10 14 14 N 1.27851 * 111.58672 * 359.97438 * 13 12 11 15 15 C 1.34737 * 117.84223 * 359.97438 * 14 13 12 16 16 C 1.38712 * 119.85782 * 42.13831 * 8 6 5 17 17 C 1.46930 * 118.73447 * 53.86169 * 5 4 2 18 18 C 1.53625 * 108.54387 * 306.08821 * 17 5 4 19 19 C 1.53042 * 109.52526 * 120.07901 * 2 1 3 20 20 H 1.09006 * 109.45695 * 61.31354 * 19 2 1 21 21 N 1.46495 * 109.46169 * 301.35430 * 19 2 1 22 22 C 1.36936 * 120.00222 * 155.00183 * 21 19 2 23 23 H 1.08002 * 120.00004 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99957 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00108 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99899 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47248 * 60.00008 * 26 24 22 28 28 H 1.48498 * 109.47379 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47499 * 299.99818 * 26 24 22 30 30 H 1.08999 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46699 * 300.06584 * 1 2 3 32 32 H 1.09000 * 109.47408 * 60.05903 * 1 2 3 33 33 H 1.09002 * 109.58594 * 65.59115 * 4 2 1 34 34 H 1.09008 * 109.58443 * 305.16888 * 4 2 1 35 35 H 1.08006 * 119.95973 * 359.97438 * 9 8 6 36 36 H 1.08007 * 119.78344 * 179.74363 * 10 9 8 37 37 H 1.07999 * 124.20768 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.97573 * 359.97438 * 16 8 6 39 39 H 1.08995 * 109.58981 * 65.93065 * 17 5 4 40 40 H 1.09004 * 109.58476 * 186.35643 * 17 5 4 41 41 H 1.08992 * 109.63926 * 294.87410 * 18 17 5 42 42 H 1.09001 * 109.45906 * 174.73838 * 18 17 5 43 43 H 0.97007 * 119.99872 * 334.99664 * 21 19 2 44 44 H 0.97008 * 119.99941 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8281 -1.1702 6 6 4.2806 -0.3850 -2.1791 7 8 3.7798 0.2025 -3.1183 8 6 5.7391 -0.6132 -2.1438 9 6 6.6151 0.4111 -2.5285 10 6 7.9611 0.2038 -2.5027 11 6 8.4797 -1.0226 -2.0843 12 16 10.1373 -1.5992 -1.9324 13 6 9.5858 -3.1179 -1.3838 14 7 8.3093 -3.1630 -1.3288 15 6 7.6244 -2.0613 -1.6930 16 6 6.2363 -1.8401 -1.7295 17 6 4.1056 -1.4307 0.0275 18 6 3.5716 -0.6942 1.2654 19 6 2.0415 -0.7229 1.2482 20 1 1.6978 -1.7573 1.2351 21 7 1.5272 -0.0532 2.4453 22 6 1.3978 -0.7496 3.6172 23 1 1.6745 -1.7927 3.6589 24 6 0.9101 -0.1150 4.7514 25 7 0.5724 1.1561 4.7005 26 14 0.7329 -1.0652 6.3499 27 1 2.0612 -1.5796 6.7699 28 1 0.1951 -0.1667 7.4028 29 1 -0.1979 -2.2045 6.1480 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8895 32 1 -0.3634 0.5129 -0.8905 33 1 1.7632 -0.1576 -2.1390 34 1 1.6056 -1.7215 -1.2981 35 1 6.2222 1.3643 -2.8502 36 1 8.6316 0.9950 -2.8042 37 1 10.2345 -3.9389 -1.1162 38 1 5.5567 -2.6255 -1.4333 39 1 3.8350 -2.4852 0.0811 40 1 5.1902 -1.3316 -0.0187 41 1 3.9161 0.3398 1.2534 42 1 3.9345 -1.1883 2.1666 43 1 1.2784 0.8837 2.4078 44 1 0.2319 1.5996 5.4932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036239511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:45 Heat of formation + Delta-G solvation = 41.831543 kcal Electronic energy + Delta-G solvation = -27564.678925 eV Core-core repulsion = 23801.877352 eV Total energy + Delta-G solvation = -3762.801573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08478 -39.91644 -37.85942 -36.82751 -34.73255 -33.05893 -31.60597 -31.36647 -30.38025 -29.32143 -26.66490 -25.49739 -25.11545 -23.91960 -22.69520 -22.18931 -21.63639 -20.06010 -19.38683 -18.52403 -17.51609 -17.09700 -16.73271 -16.13169 -16.03800 -15.22761 -15.04547 -14.86546 -14.56378 -14.30582 -14.13109 -13.91289 -13.74952 -13.34977 -13.24708 -12.99475 -12.49875 -12.42310 -12.37534 -12.09752 -11.74822 -11.61421 -11.43496 -11.19039 -10.94185 -10.81901 -10.68367 -10.48012 -10.39286 -10.24043 -10.07416 -9.93175 -9.74277 -9.63649 -9.14501 -8.92095 -8.57345 -8.45357 -6.98113 -5.78919 -3.07690 0.03188 0.44859 0.83934 1.30169 1.92500 2.59530 2.92583 3.34016 3.41827 3.46751 3.47474 3.61883 4.17646 4.31816 4.56314 4.66445 4.77120 4.80412 4.99887 5.08648 5.22710 5.24444 5.33231 5.37235 5.50371 5.57431 5.65490 5.67169 5.69774 5.75028 5.90423 5.93088 6.05948 6.12038 6.16992 6.28891 6.35434 6.42047 6.49765 6.60610 6.79466 6.90276 7.03448 7.15850 7.39132 7.66777 8.07222 8.39299 9.50716 10.07987 10.42875 11.43470 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012964 B = 0.002765 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.375042 B =10124.557264 C =11582.303633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.597 5.597 6 C 0.560 3.440 7 O -0.538 6.538 8 C -0.107 4.107 9 C -0.051 4.051 10 C -0.076 4.076 11 C -0.165 4.165 12 S 0.100 5.900 13 C 0.066 3.934 14 N -0.457 5.457 15 C 0.070 3.930 16 C -0.026 4.026 17 C 0.096 3.904 18 C -0.151 4.151 19 C 0.184 3.816 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.206 0.794 38 H 0.146 0.854 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.384 0.616 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.743 -5.536 -16.194 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.089 0.911 4 C -0.002 4.002 5 N -0.328 5.328 6 C 0.348 3.652 7 O -0.416 6.416 8 C -0.113 4.113 9 C -0.073 4.073 10 C -0.099 4.099 11 C -0.284 4.284 12 S 0.353 5.647 13 C -0.239 4.239 14 N -0.169 5.169 15 C -0.050 4.050 16 C -0.047 4.047 17 C -0.027 4.027 18 C -0.192 4.192 19 C 0.073 3.927 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.163 0.837 36 H 0.156 0.844 37 H 0.222 0.778 38 H 0.164 0.836 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.196 -5.520 -16.473 25.159 hybrid contribution -0.842 -0.259 1.179 1.472 sum 17.355 -5.779 -15.294 23.843 Atomic orbital electron populations 1.21658 0.94017 1.01799 1.01897 1.21742 0.96638 1.00107 0.94493 0.91150 1.21782 0.77756 1.01052 0.99651 1.48094 1.07354 1.59562 1.17808 1.18095 0.85719 0.78819 0.82577 1.90784 1.74622 1.41552 1.34639 1.19768 0.94062 0.94810 1.02674 1.20884 0.91775 0.98996 0.95652 1.20001 0.95329 0.94460 1.00096 1.24071 0.96560 1.00274 1.07501 1.84055 1.04810 1.10006 1.65782 1.28119 0.93848 1.01305 1.00664 1.66213 1.06998 1.26899 1.16816 1.19046 0.94806 0.88073 1.03029 1.20919 0.91805 0.96859 0.95162 1.22306 0.98217 0.97384 0.84748 1.22770 1.00379 1.00382 0.95649 1.20201 0.90283 0.95725 0.86456 0.93375 1.42395 1.76454 1.11451 1.05718 1.19169 1.36026 0.94099 0.87726 0.91291 1.24724 1.02026 0.96016 0.98036 1.69649 1.49887 1.09506 1.29000 0.86303 0.77745 0.78729 0.83601 1.21326 1.21753 1.21286 0.93029 0.90711 0.93777 0.89130 0.91255 0.83696 0.84415 0.77768 0.83630 0.91090 0.89926 0.92115 0.90512 0.78202 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.03 37.16 0.34 -1.84 16 2 C -0.11 -1.78 2.46 -90.50 -0.22 -2.00 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.12 1.70 5.72 -3.71 -0.02 1.68 16 5 N -0.60 -8.34 2.97 -173.68 -0.52 -8.85 16 6 C 0.56 8.12 7.28 -12.41 -0.09 8.03 16 7 O -0.54 -9.24 16.36 5.30 0.09 -9.15 16 8 C -0.11 -1.31 5.06 -105.15 -0.53 -1.84 16 9 C -0.05 -0.54 9.58 -39.59 -0.38 -0.92 16 10 C -0.08 -0.70 9.99 -39.81 -0.40 -1.10 16 11 C -0.16 -1.67 6.57 -38.37 -0.25 -1.92 16 12 S 0.10 0.73 23.17 -107.50 -2.49 -1.76 16 13 C 0.07 0.51 12.10 51.11 0.62 1.13 16 14 N -0.46 -5.07 10.57 -13.02 -0.14 -5.21 16 15 C 0.07 0.81 6.99 -84.99 -0.59 0.22 16 16 C -0.03 -0.30 7.44 -38.51 -0.29 -0.59 16 17 C 0.10 1.28 4.95 -3.48 -0.02 1.26 16 18 C -0.15 -2.52 5.68 -26.38 -0.15 -2.67 16 19 C 0.18 3.42 2.19 -67.89 -0.15 3.27 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -17.11 4.41 -53.38 -0.24 -17.35 16 22 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 26 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.41 7.37 -51.93 -0.38 1.03 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 34 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 35 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 37 H 0.21 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.15 1.58 6.72 -52.49 -0.35 1.23 16 39 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 40 H 0.08 1.02 4.83 -51.93 -0.25 0.77 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.38 9.87 7.50 -40.82 -0.31 9.57 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -32.16 370.65 -10.24 -42.40 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.85 Total: 8.46 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -2.38 Total: -4.24 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.16 Total: -58.24 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.49 Total: -1.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.16 -10.24 -42.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036239511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.227 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds