Wall clock time and date at job start Wed Apr 1 2020 03:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49875 * 2 1 4 4 C 1.53190 * 109.49754 * 239.93500 * 2 1 3 5 5 N 1.46922 * 108.77895 * 185.38054 * 4 2 1 6 6 C 1.34775 * 120.63327 * 233.58574 * 5 4 2 7 7 O 1.21573 * 119.99818 * 5.86115 * 6 5 4 8 8 C 1.47664 * 119.99881 * 185.86355 * 6 5 4 9 9 C 1.40162 * 119.85289 * 222.16524 * 8 6 5 10 10 C 1.36210 * 120.07800 * 180.25701 * 9 8 6 11 11 C 1.39578 * 120.43597 * 359.49131 * 10 9 8 12 12 S 1.76154 * 131.53533 * 180.22802 * 11 10 9 13 13 C 1.70633 * 90.85530 * 180.23575 * 12 11 10 14 14 N 1.27851 * 111.58672 * 359.97438 * 13 12 11 15 15 C 1.34737 * 117.84223 * 359.97438 * 14 13 12 16 16 C 1.38712 * 119.85782 * 42.13831 * 8 6 5 17 17 C 1.46930 * 118.73447 * 53.86169 * 5 4 2 18 18 C 1.53625 * 108.54387 * 306.08821 * 17 5 4 19 19 C 1.53042 * 109.52526 * 120.07901 * 2 1 3 20 20 H 1.09006 * 109.45695 * 61.31354 * 19 2 1 21 21 N 1.46495 * 109.46169 * 301.35430 * 19 2 1 22 22 C 1.36936 * 120.00222 * 155.00183 * 21 19 2 23 23 H 1.08002 * 120.00004 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99957 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00108 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99899 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47248 * 60.00008 * 26 24 22 28 28 H 1.48498 * 109.47379 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47499 * 299.99818 * 26 24 22 30 30 H 1.08999 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46699 * 300.06584 * 1 2 3 32 32 H 1.09000 * 109.47408 * 60.05903 * 1 2 3 33 33 H 1.09002 * 109.58594 * 65.59115 * 4 2 1 34 34 H 1.09008 * 109.58443 * 305.16888 * 4 2 1 35 35 H 1.08006 * 119.95973 * 359.97438 * 9 8 6 36 36 H 1.08007 * 119.78344 * 179.74363 * 10 9 8 37 37 H 1.07999 * 124.20768 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.97573 * 359.97438 * 16 8 6 39 39 H 1.08995 * 109.58981 * 65.93065 * 17 5 4 40 40 H 1.09004 * 109.58476 * 186.35643 * 17 5 4 41 41 H 1.08992 * 109.63926 * 294.87410 * 18 17 5 42 42 H 1.09001 * 109.45906 * 174.73838 * 18 17 5 43 43 H 0.97007 * 119.99872 * 334.99664 * 21 19 2 44 44 H 0.97008 * 119.99941 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8281 -1.1702 6 6 4.2806 -0.3850 -2.1791 7 8 3.7798 0.2025 -3.1183 8 6 5.7391 -0.6132 -2.1438 9 6 6.6151 0.4111 -2.5285 10 6 7.9611 0.2038 -2.5027 11 6 8.4797 -1.0226 -2.0843 12 16 10.1373 -1.5992 -1.9324 13 6 9.5858 -3.1179 -1.3838 14 7 8.3093 -3.1630 -1.3288 15 6 7.6244 -2.0613 -1.6930 16 6 6.2363 -1.8401 -1.7295 17 6 4.1056 -1.4307 0.0275 18 6 3.5716 -0.6942 1.2654 19 6 2.0415 -0.7229 1.2482 20 1 1.6978 -1.7573 1.2351 21 7 1.5272 -0.0532 2.4453 22 6 1.3978 -0.7496 3.6172 23 1 1.6745 -1.7927 3.6589 24 6 0.9101 -0.1150 4.7514 25 7 0.5724 1.1561 4.7005 26 14 0.7329 -1.0652 6.3499 27 1 2.0612 -1.5796 6.7699 28 1 0.1951 -0.1667 7.4028 29 1 -0.1979 -2.2045 6.1480 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8895 32 1 -0.3634 0.5129 -0.8905 33 1 1.7632 -0.1576 -2.1390 34 1 1.6056 -1.7215 -1.2981 35 1 6.2222 1.3643 -2.8502 36 1 8.6316 0.9950 -2.8042 37 1 10.2345 -3.9389 -1.1162 38 1 5.5567 -2.6255 -1.4333 39 1 3.8350 -2.4852 0.0811 40 1 5.1902 -1.3316 -0.0187 41 1 3.9161 0.3398 1.2534 42 1 3.9345 -1.1883 2.1666 43 1 1.2784 0.8837 2.4078 44 1 0.2319 1.5996 5.4932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036239511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:44 Heat of formation + Delta-G solvation = 22.144687 kcal Electronic energy + Delta-G solvation = -27565.532611 eV Core-core repulsion = 23801.877352 eV Total energy + Delta-G solvation = -3763.655259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.99845 -40.90511 -39.14292 -37.68766 -36.26072 -34.59514 -33.12649 -32.34736 -31.19838 -30.96294 -27.82775 -26.90159 -26.02287 -25.18520 -23.95453 -23.21722 -22.90369 -21.29057 -20.50866 -19.35742 -19.02839 -18.49789 -17.62297 -17.09648 -16.97385 -16.75372 -16.15190 -15.84388 -15.72109 -15.47955 -15.43780 -15.05896 -14.94420 -14.79118 -14.28478 -14.16127 -13.98341 -13.65724 -13.23788 -13.13701 -13.06633 -12.83844 -12.81336 -12.72506 -12.48835 -12.20418 -12.17652 -12.08530 -11.84057 -11.67926 -11.26609 -11.16263 -11.07102 -10.80654 -10.71369 -9.93070 -9.73567 -9.17901 -8.95579 -7.90848 -5.18501 -0.67460 -0.37357 0.20488 0.65760 1.18823 1.48621 1.50618 1.56366 1.56896 1.85894 2.51229 2.58231 2.89336 3.37230 3.42511 3.45974 3.78137 3.78629 3.92827 3.95766 4.05158 4.07094 4.15393 4.26910 4.34436 4.41957 4.48065 4.58116 4.64334 4.75339 4.76735 4.80653 4.90759 4.94138 4.97077 5.00304 5.09300 5.19950 5.29564 5.38888 5.42595 5.48305 5.55374 5.60787 6.24958 6.30592 6.49449 6.94335 7.37076 8.13043 8.36376 9.32503 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012964 B = 0.002765 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.375042 B =10124.557264 C =11582.303633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 H 0.053 0.947 4 C 0.126 3.874 5 N -0.597 5.597 6 C 0.562 3.438 7 O -0.569 6.569 8 C -0.120 4.120 9 C -0.064 4.064 10 C -0.066 4.066 11 C -0.187 4.187 12 S 0.154 5.846 13 C 0.072 3.928 14 N -0.495 5.495 15 C 0.055 3.945 16 C -0.033 4.033 17 C 0.109 3.891 18 C -0.141 4.141 19 C 0.180 3.820 20 H 0.051 0.949 21 N -0.731 5.731 22 C -0.232 4.232 23 H 0.077 0.923 24 C -0.076 4.076 25 N -0.971 5.971 26 Si 0.968 3.032 27 H -0.279 1.279 28 H -0.300 1.300 29 H -0.278 1.278 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.149 0.851 36 H 0.166 0.834 37 H 0.242 0.758 38 H 0.148 0.852 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.043 0.957 42 H 0.065 0.935 43 H 0.371 0.629 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.209 -7.318 -17.107 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.071 0.929 4 C 0.004 3.996 5 N -0.328 5.328 6 C 0.351 3.649 7 O -0.450 6.450 8 C -0.126 4.126 9 C -0.087 4.087 10 C -0.089 4.089 11 C -0.306 4.306 12 S 0.409 5.591 13 C -0.232 4.232 14 N -0.208 5.208 15 C -0.065 4.065 16 C -0.055 4.055 17 C -0.014 4.014 18 C -0.182 4.182 19 C 0.071 3.929 20 H 0.069 0.931 21 N -0.370 5.370 22 C -0.364 4.364 23 H 0.095 0.905 24 C -0.268 4.268 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.205 1.205 28 H -0.227 1.227 29 H -0.205 1.205 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.167 0.833 36 H 0.184 0.816 37 H 0.258 0.742 38 H 0.166 0.834 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.202 0.798 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 20.706 -7.349 -17.416 28.037 hybrid contribution -1.433 0.252 1.380 2.005 sum 19.274 -7.097 -16.036 26.058 Atomic orbital electron populations 1.21572 0.93727 1.02135 1.01291 1.21605 0.96826 0.99110 0.94445 0.92884 1.21707 0.78114 1.01763 0.98064 1.48124 1.07275 1.59458 1.17955 1.18428 0.86644 0.77842 0.81975 1.90759 1.75424 1.42993 1.35802 1.19626 0.92718 0.95854 1.04399 1.21002 0.92433 0.98927 0.96315 1.20278 0.95083 0.94892 0.98612 1.24443 0.98486 1.00331 1.07358 1.83906 1.02064 1.08795 1.64378 1.28843 0.93411 1.02560 0.98398 1.66261 1.08392 1.27222 1.18925 1.19212 0.95024 0.88899 1.03339 1.20899 0.92361 0.96603 0.95605 1.22247 0.98833 0.97685 0.82626 1.22560 0.98703 0.99836 0.97122 1.20424 0.91337 0.95493 0.85605 0.93146 1.42574 1.76817 1.10906 1.06677 1.19559 1.33853 0.94434 0.88531 0.90497 1.25482 1.03131 0.96912 1.01267 1.69814 1.51939 1.11126 1.29310 0.85295 0.77875 0.77390 0.79714 1.20517 1.22675 1.20450 0.92163 0.94085 0.91563 0.89233 0.89232 0.83347 0.81604 0.74165 0.83431 0.89025 0.88579 0.93783 0.91624 0.79768 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.03 71.98 0.65 -3.48 16 2 C -0.10 -3.24 2.46 -10.72 -0.03 -3.27 16 3 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.13 3.45 5.72 86.36 0.49 3.94 16 5 N -0.60 -16.23 2.97 -821.67 -2.44 -18.67 16 6 C 0.56 16.10 7.28 86.73 0.63 16.73 16 7 O -0.57 -19.59 16.36 -3.95 -0.06 -19.65 16 8 C -0.12 -2.88 5.06 -20.21 -0.10 -2.98 16 9 C -0.06 -1.31 9.58 22.26 0.21 -1.10 16 10 C -0.07 -1.10 9.99 22.12 0.22 -0.88 16 11 C -0.19 -3.38 6.57 23.05 0.15 -3.23 16 12 S 0.15 1.76 23.17 -56.49 -1.31 0.45 16 13 C 0.07 0.89 12.10 130.82 1.58 2.47 16 14 N -0.50 -9.98 10.57 -194.90 -2.06 -12.04 16 15 C 0.05 1.19 6.99 39.74 0.28 1.47 16 16 C -0.03 -0.75 7.44 22.96 0.17 -0.58 16 17 C 0.11 2.76 4.95 86.51 0.43 3.19 16 18 C -0.14 -4.71 5.68 30.82 0.17 -4.54 16 19 C 0.18 6.71 2.19 45.02 0.10 6.81 16 20 H 0.05 1.87 8.08 -2.38 -0.02 1.86 16 21 N -0.73 -35.51 4.41 -322.81 -1.42 -36.93 16 22 C -0.23 -12.43 9.93 84.03 0.83 -11.59 16 23 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 24 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 25 N -0.97 -59.06 13.06 21.65 0.28 -58.77 16 26 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 29 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 31 H 0.04 1.58 7.37 -2.38 -0.02 1.57 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 2.54 7.00 -2.39 -0.02 2.52 16 34 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 36 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.24 0.84 8.06 -2.91 -0.02 0.82 16 38 H 0.15 3.07 6.72 -2.91 -0.02 3.05 16 39 H 0.09 2.00 8.13 -2.39 -0.02 1.98 16 40 H 0.10 2.26 4.83 -2.39 -0.01 2.25 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.37 19.84 7.50 -92.70 -0.70 19.14 16 44 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 Total: -1.00 -71.02 370.65 1.62 -69.40 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.34 Total: 29.42 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 6.27 Total: -0.86 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -5.64 Total: -126.41 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.06 Total: -19.65 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.31 Total: 0.45 kcal Total: -71.02 1.62 -69.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036239511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.547 kcal (2) G-P(sol) polarization free energy of solvation -71.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds