Wall clock time and date at job start Wed Apr 1 2020 03:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47487 * 2 1 4 4 N 1.46504 * 109.47395 * 239.99529 * 2 1 3 5 5 C 1.36942 * 119.99454 * 85.27918 * 4 2 1 6 6 H 1.07994 * 120.00216 * 359.71898 * 5 4 2 7 7 C 1.38816 * 119.99802 * 179.72677 * 5 4 2 8 8 N 1.31616 * 120.00061 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99864 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47397 * 89.99983 * 9 7 5 11 11 H 1.48496 * 109.47171 * 210.00137 * 9 7 5 12 12 H 1.48503 * 109.47462 * 330.00084 * 9 7 5 13 13 C 1.53002 * 109.46981 * 119.99845 * 2 1 3 14 14 H 1.08999 * 110.88595 * 59.90096 * 13 2 1 15 15 C 1.55153 * 111.00494 * 183.82172 * 13 2 1 16 16 C 1.54320 * 102.94425 * 153.57615 * 15 13 2 17 17 N 1.47022 * 107.27324 * 337.81060 * 16 15 13 18 18 C 1.34767 * 125.65353 * 178.90603 * 17 16 15 19 19 O 1.21629 * 120.00220 * 180.02562 * 18 17 16 20 20 C 1.47201 * 119.99895 * 0.03992 * 18 17 16 21 21 C 1.33793 * 124.64892 * 179.72564 * 20 18 17 22 22 C 1.40104 * 115.49697 * 179.78579 * 21 20 18 23 23 C 1.41716 * 129.98677 * 180.16026 * 22 21 20 24 24 C 1.36044 * 119.33616 * 180.33475 * 23 22 21 25 25 N 1.32308 * 121.57902 * 359.97438 * 24 23 22 26 26 C 1.31355 * 122.05142 * 359.97438 * 25 24 23 27 27 C 1.39723 * 120.60514 * 0.07534 * 26 25 24 28 28 S 1.75531 * 124.64825 * 0.02562 * 20 18 17 29 29 C 1.47423 * 108.69843 * 358.93764 * 17 16 15 30 30 H 1.09006 * 109.47156 * 185.07849 * 1 2 3 31 31 H 1.08993 * 109.47574 * 305.08579 * 1 2 3 32 32 H 1.09006 * 109.46822 * 65.08647 * 1 2 3 33 33 H 0.96994 * 120.00117 * 265.00122 * 4 2 1 34 34 H 0.97003 * 119.99927 * 180.02562 * 8 7 5 35 35 H 1.09007 * 110.72353 * 271.94187 * 15 13 2 36 36 H 1.09000 * 110.72196 * 35.21321 * 15 13 2 37 37 H 1.08998 * 109.88351 * 218.38813 * 16 15 13 38 38 H 1.09010 * 110.01344 * 97.29517 * 16 15 13 39 39 H 1.08002 * 122.25158 * 359.97438 * 21 20 18 40 40 H 1.08006 * 120.33689 * 0.32126 * 23 22 21 41 41 H 1.07999 * 119.20734 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.69541 * 180.02562 * 26 25 24 43 43 H 1.09005 * 110.37081 * 265.29303 * 29 17 16 44 44 H 1.09002 * 110.36766 * 142.96998 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1546 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4229 7 6 2.6227 -0.6592 -3.5063 8 7 2.7532 -0.0014 -4.6388 9 14 3.0676 -2.4715 -3.4222 10 1 1.8722 -3.2903 -3.7477 11 1 4.1475 -2.7620 -4.3991 12 1 3.5366 -2.8031 -2.0527 13 6 2.0399 -0.7212 1.2493 14 1 1.6879 -1.7525 1.2735 15 6 3.5879 -0.6589 1.3345 16 6 3.8556 -0.7750 2.8498 17 7 2.6288 -0.3561 3.5433 18 6 2.4494 -0.3352 4.8788 19 8 1.3871 0.0315 5.3441 20 6 3.5392 -0.7559 5.7744 21 6 3.4645 -0.7670 7.1102 22 6 4.6161 -1.2085 7.7749 23 6 4.8709 -1.3452 9.1623 24 6 6.0865 -1.7948 9.5756 25 7 7.0391 -2.1089 8.7128 26 6 6.8658 -2.0054 7.4149 27 6 5.6515 -1.5518 6.8933 28 16 5.1174 -1.3045 5.2365 29 6 1.6270 0.0367 2.5356 30 1 -0.3634 -1.0237 0.0910 31 1 -0.3634 0.5906 0.8408 32 1 -0.3633 0.4329 -0.9321 33 1 2.2491 -1.6318 -1.1525 34 1 3.0800 -0.4579 -5.4299 35 1 4.0376 -1.4947 0.7982 36 1 3.9574 0.2914 0.9493 37 1 4.6819 -0.1223 3.1313 38 1 4.0937 -1.8068 3.1087 39 1 2.5753 -0.4594 7.6403 40 1 4.1077 -1.0947 9.8843 41 1 6.2783 -1.8986 10.6334 42 1 7.6695 -2.2727 6.7448 43 1 1.6591 1.1134 2.3682 44 1 0.6299 -0.2692 2.8525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672209372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:39 Heat of formation + Delta-G solvation = 40.733030 kcal Electronic energy + Delta-G solvation = -26797.163851 eV Core-core repulsion = 23034.314642 eV Total energy + Delta-G solvation = -3762.849208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.88657 -40.30983 -38.20418 -36.39217 -35.50985 -32.61270 -31.91210 -31.23938 -30.57403 -29.78549 -27.93281 -25.87785 -24.59953 -24.11346 -23.01259 -21.93393 -21.29989 -19.96311 -19.91628 -18.62540 -17.64988 -17.24808 -16.82801 -16.71221 -16.23886 -15.59850 -15.12114 -14.89415 -14.77232 -14.36027 -14.30422 -13.93576 -13.84414 -13.54825 -13.35160 -12.97306 -12.80354 -12.60279 -12.43313 -12.35585 -12.25063 -12.05000 -11.75353 -11.17456 -11.06537 -10.91899 -10.68398 -10.60094 -10.44125 -10.39428 -10.28819 -10.11377 -10.01278 -9.63893 -9.53458 -8.99984 -8.94906 -8.29975 -7.34077 -5.81933 -3.18027 -0.27062 0.53625 0.87994 1.33724 1.52171 2.58472 2.77899 3.28968 3.30885 3.34963 3.41221 3.89345 3.98523 4.18342 4.38659 4.42550 4.50214 4.53577 4.62077 4.82669 4.90786 5.02235 5.04998 5.13248 5.21839 5.27239 5.37823 5.47597 5.52771 5.58057 5.68204 5.69668 5.72268 5.82610 5.97055 6.01283 6.07059 6.11743 6.24500 6.33533 6.41578 6.71294 6.94911 7.15730 7.43251 7.74793 7.93710 8.36737 9.14863 9.87167 10.06577 11.36276 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.002377 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.240721 B =11776.485768 C =12877.531966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.083 0.917 15 C -0.112 4.112 16 C 0.080 3.920 17 N -0.608 5.608 18 C 0.597 3.403 19 O -0.525 6.525 20 C -0.199 4.199 21 C -0.057 4.057 22 C -0.045 4.045 23 C -0.121 4.121 24 C 0.076 3.924 25 N -0.468 5.468 26 C 0.160 3.840 27 C -0.218 4.218 28 S 0.181 5.819 29 C 0.116 3.884 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.159 0.841 40 H 0.142 0.858 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.077 0.923 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.874 -3.536 26.824 27.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.581 5.581 9 Si 0.715 3.285 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.203 1.203 13 C -0.127 4.127 14 H 0.101 0.899 15 C -0.150 4.150 16 C -0.044 4.044 17 N -0.341 5.341 18 C 0.384 3.616 19 O -0.403 6.403 20 C -0.319 4.319 21 C -0.089 4.089 22 C -0.061 4.061 23 C -0.143 4.143 24 C -0.073 4.073 25 N -0.178 5.178 26 C -0.011 4.011 27 C -0.335 4.335 28 S 0.448 5.552 29 C -0.005 4.005 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.177 0.823 40 H 0.160 0.840 41 H 0.178 0.822 42 H 0.181 0.819 43 H 0.095 0.905 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.733 -3.623 25.917 27.021 hybrid contribution -1.057 -0.907 0.971 1.698 sum 5.677 -4.530 26.889 27.852 Atomic orbital electron populations 1.22468 0.98598 1.00722 1.01116 1.20096 0.92092 0.95458 0.84256 0.92261 1.42728 1.79758 1.09355 1.07049 1.19037 1.36901 0.95603 0.85626 0.89185 1.24670 1.01429 0.97418 0.95595 1.69696 1.52431 1.35546 1.00389 0.86567 0.78113 0.86904 0.76957 1.21199 1.21839 1.20344 1.22761 0.95083 1.00446 0.94435 0.89909 1.22583 0.96474 1.04696 0.91256 1.22351 0.86876 1.00267 0.94888 1.48384 1.16476 1.64670 1.04520 1.16645 0.86028 0.78483 0.80415 1.90840 1.26217 1.48205 1.75054 1.23963 0.99463 1.10669 0.97843 1.20131 0.98628 0.97843 0.92348 1.18337 0.92979 1.00297 0.94462 1.21809 0.99040 0.99707 0.93703 1.22169 0.89069 0.96169 0.99868 1.67708 1.32816 1.14530 1.02708 1.22364 0.93407 0.93544 0.91750 1.24596 1.00316 1.08020 1.00606 1.84696 1.04566 1.65370 1.00583 1.22385 0.92073 0.99822 0.86268 0.93620 0.93996 0.91964 0.80694 0.93046 0.89373 0.89340 0.90515 0.90679 0.82315 0.84019 0.82237 0.81881 0.90450 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.23 37.15 0.34 -2.37 16 2 C 0.19 3.22 2.40 -67.93 -0.16 3.05 16 3 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 4 N -0.75 -15.92 4.68 -53.43 -0.25 -16.17 16 5 C -0.24 -6.37 10.41 -15.06 -0.16 -6.53 16 6 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 8 N -0.93 -28.34 13.97 55.49 0.78 -27.56 16 9 Si 0.88 21.08 27.73 -169.99 -4.71 16.36 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.05 6.52 56.52 0.37 -5.68 16 13 C -0.11 -1.44 2.63 -88.47 -0.23 -1.68 16 14 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 15 C -0.11 -1.38 6.19 -24.90 -0.15 -1.54 16 16 C 0.08 0.84 5.16 -3.07 -0.02 0.83 16 17 N -0.61 -7.47 3.33 -171.87 -0.57 -8.04 16 18 C 0.60 7.94 7.83 -12.62 -0.10 7.84 16 19 O -0.53 -8.46 16.98 5.25 0.09 -8.38 16 20 C -0.20 -2.19 6.27 -37.50 -0.24 -2.42 16 21 C -0.06 -0.57 9.81 -40.44 -0.40 -0.96 16 22 C -0.05 -0.42 5.91 -107.11 -0.63 -1.05 16 23 C -0.12 -0.88 10.13 -39.04 -0.40 -1.28 16 24 C 0.08 0.57 11.06 -18.13 -0.20 0.37 16 25 N -0.47 -4.33 10.34 -13.41 -0.14 -4.47 16 26 C 0.16 1.36 11.24 -17.20 -0.19 1.17 16 27 C -0.22 -2.00 6.54 -38.27 -0.25 -2.25 16 28 S 0.18 1.60 18.46 -107.50 -1.98 -0.38 16 29 C 0.12 1.47 5.52 -2.53 -0.01 1.46 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.57 7.60 -51.93 -0.39 0.17 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.36 7.59 5.66 -40.82 -0.23 7.36 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 36 H 0.09 1.15 8.04 -51.93 -0.42 0.73 16 37 H 0.08 0.71 6.95 -51.93 -0.36 0.35 16 38 H 0.08 0.71 6.78 -51.92 -0.35 0.36 16 39 H 0.16 1.45 7.96 -52.49 -0.42 1.03 16 40 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 41 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 44 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 LS Contribution 372.31 15.07 5.61 5.61 Total: -1.00 -32.54 372.31 -10.06 -42.60 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.98 Total: 5.76 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.89 Total: -5.33 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.19 Total: -56.25 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.71 Total: 16.36 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.98 Total: -0.38 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.54 -10.06 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672209372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.330 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds