Wall clock time and date at job start Wed Apr 1 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47487 * 2 1 4 4 N 1.46504 * 109.47395 * 239.99529 * 2 1 3 5 5 C 1.36942 * 119.99454 * 85.27918 * 4 2 1 6 6 H 1.07994 * 120.00216 * 359.71898 * 5 4 2 7 7 C 1.38816 * 119.99802 * 179.72677 * 5 4 2 8 8 N 1.31616 * 120.00061 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99864 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47397 * 89.99983 * 9 7 5 11 11 H 1.48496 * 109.47171 * 210.00137 * 9 7 5 12 12 H 1.48503 * 109.47462 * 330.00084 * 9 7 5 13 13 C 1.53002 * 109.46981 * 119.99845 * 2 1 3 14 14 H 1.08999 * 110.88595 * 59.90096 * 13 2 1 15 15 C 1.55153 * 111.00494 * 183.82172 * 13 2 1 16 16 C 1.54320 * 102.94425 * 153.57615 * 15 13 2 17 17 N 1.47022 * 107.27324 * 337.81060 * 16 15 13 18 18 C 1.34767 * 125.65353 * 178.90603 * 17 16 15 19 19 O 1.21629 * 120.00220 * 180.02562 * 18 17 16 20 20 C 1.47201 * 119.99895 * 0.03992 * 18 17 16 21 21 C 1.33793 * 124.64892 * 179.72564 * 20 18 17 22 22 C 1.40104 * 115.49697 * 179.78579 * 21 20 18 23 23 C 1.41716 * 129.98677 * 180.16026 * 22 21 20 24 24 C 1.36044 * 119.33616 * 180.33475 * 23 22 21 25 25 N 1.32308 * 121.57902 * 359.97438 * 24 23 22 26 26 C 1.31355 * 122.05142 * 359.97438 * 25 24 23 27 27 C 1.39723 * 120.60514 * 0.07534 * 26 25 24 28 28 S 1.75531 * 124.64825 * 0.02562 * 20 18 17 29 29 C 1.47423 * 108.69843 * 358.93764 * 17 16 15 30 30 H 1.09006 * 109.47156 * 185.07849 * 1 2 3 31 31 H 1.08993 * 109.47574 * 305.08579 * 1 2 3 32 32 H 1.09006 * 109.46822 * 65.08647 * 1 2 3 33 33 H 0.96994 * 120.00117 * 265.00122 * 4 2 1 34 34 H 0.97003 * 119.99927 * 180.02562 * 8 7 5 35 35 H 1.09007 * 110.72353 * 271.94187 * 15 13 2 36 36 H 1.09000 * 110.72196 * 35.21321 * 15 13 2 37 37 H 1.08998 * 109.88351 * 218.38813 * 16 15 13 38 38 H 1.09010 * 110.01344 * 97.29517 * 16 15 13 39 39 H 1.08002 * 122.25158 * 359.97438 * 21 20 18 40 40 H 1.08006 * 120.33689 * 0.32126 * 23 22 21 41 41 H 1.07999 * 119.20734 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.69541 * 180.02562 * 26 25 24 43 43 H 1.09005 * 110.37081 * 265.29303 * 29 17 16 44 44 H 1.09002 * 110.36766 * 142.96998 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1546 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4229 7 6 2.6227 -0.6592 -3.5063 8 7 2.7532 -0.0014 -4.6388 9 14 3.0676 -2.4715 -3.4222 10 1 1.8722 -3.2903 -3.7477 11 1 4.1475 -2.7620 -4.3991 12 1 3.5366 -2.8031 -2.0527 13 6 2.0399 -0.7212 1.2493 14 1 1.6879 -1.7525 1.2735 15 6 3.5879 -0.6589 1.3345 16 6 3.8556 -0.7750 2.8498 17 7 2.6288 -0.3561 3.5433 18 6 2.4494 -0.3352 4.8788 19 8 1.3871 0.0315 5.3441 20 6 3.5392 -0.7559 5.7744 21 6 3.4645 -0.7670 7.1102 22 6 4.6161 -1.2085 7.7749 23 6 4.8709 -1.3452 9.1623 24 6 6.0865 -1.7948 9.5756 25 7 7.0391 -2.1089 8.7128 26 6 6.8658 -2.0054 7.4149 27 6 5.6515 -1.5518 6.8933 28 16 5.1174 -1.3045 5.2365 29 6 1.6270 0.0367 2.5356 30 1 -0.3634 -1.0237 0.0910 31 1 -0.3634 0.5906 0.8408 32 1 -0.3633 0.4329 -0.9321 33 1 2.2491 -1.6318 -1.1525 34 1 3.0800 -0.4579 -5.4299 35 1 4.0376 -1.4947 0.7982 36 1 3.9574 0.2914 0.9493 37 1 4.6819 -0.1223 3.1313 38 1 4.0937 -1.8068 3.1087 39 1 2.5753 -0.4594 7.6403 40 1 4.1077 -1.0947 9.8843 41 1 6.2783 -1.8986 10.6334 42 1 7.6695 -2.2727 6.7448 43 1 1.6591 1.1134 2.3682 44 1 0.6299 -0.2692 2.8525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672209372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:38 Heat of formation + Delta-G solvation = 20.528459 kcal Electronic energy + Delta-G solvation = -26798.039987 eV Core-core repulsion = 23034.314642 eV Total energy + Delta-G solvation = -3763.725344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59306 -41.22798 -39.30387 -37.20360 -36.90743 -34.33928 -32.59366 -32.43179 -31.45513 -31.18642 -29.11562 -26.83073 -25.74090 -25.06432 -24.18848 -22.93937 -22.35618 -21.32740 -20.71273 -19.67601 -19.28507 -18.00638 -17.76110 -17.44525 -17.13527 -16.73106 -16.31322 -15.94042 -15.59762 -15.42608 -15.21801 -15.06296 -14.87751 -14.75553 -14.37937 -14.25294 -14.07023 -13.81107 -13.54986 -13.52834 -13.16369 -13.12832 -12.89449 -12.83878 -12.43315 -12.04328 -11.96352 -11.89328 -11.71151 -11.64754 -11.47222 -11.34903 -11.01682 -10.94382 -10.73288 -10.28285 -9.89400 -9.27425 -8.93721 -7.96247 -5.29137 -0.99399 -0.04637 0.18099 0.64137 0.78391 1.41453 1.45736 1.52923 1.64239 1.86185 2.53798 2.68814 3.05970 3.34793 3.39386 3.46062 3.51599 3.59912 3.73954 3.78713 3.83841 4.01947 4.13610 4.28859 4.32061 4.39585 4.45335 4.54320 4.56312 4.59032 4.64730 4.68196 4.80954 4.89711 4.92846 4.99751 5.04256 5.08484 5.11775 5.25467 5.35736 5.53118 5.58429 5.84184 6.19459 6.27274 6.76249 6.84794 7.14484 7.90079 8.09752 9.25339 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.002377 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.240721 B =11776.485768 C =12877.531966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.187 3.813 3 H 0.049 0.951 4 N -0.745 5.745 5 C -0.219 4.219 6 H 0.055 0.945 7 C -0.068 4.068 8 N -0.987 5.987 9 Si 0.952 3.048 10 H -0.286 1.286 11 H -0.302 1.302 12 H -0.241 1.241 13 C -0.097 4.097 14 H 0.091 0.909 15 C -0.111 4.111 16 C 0.085 3.915 17 N -0.608 5.608 18 C 0.596 3.404 19 O -0.562 6.562 20 C -0.225 4.225 21 C -0.049 4.049 22 C -0.064 4.064 23 C -0.116 4.116 24 C 0.071 3.929 25 N -0.486 5.486 26 C 0.152 3.848 27 C -0.226 4.226 28 S 0.210 5.790 29 C 0.120 3.880 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.366 0.634 34 H 0.255 0.745 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.188 0.812 42 H 0.184 0.816 43 H 0.078 0.922 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 -5.334 29.706 30.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.079 3.921 3 H 0.067 0.933 4 N -0.389 5.389 5 C -0.350 4.350 6 H 0.073 0.927 7 C -0.259 4.259 8 N -0.638 5.638 9 Si 0.780 3.220 10 H -0.213 1.213 11 H -0.229 1.229 12 H -0.164 1.164 13 C -0.117 4.117 14 H 0.109 0.891 15 C -0.149 4.149 16 C -0.039 4.039 17 N -0.340 5.340 18 C 0.385 3.615 19 O -0.443 6.443 20 C -0.345 4.345 21 C -0.083 4.083 22 C -0.079 4.079 23 C -0.138 4.138 24 C -0.078 4.078 25 N -0.196 5.196 26 C -0.018 4.018 27 C -0.344 4.344 28 S 0.477 5.523 29 C -0.002 4.002 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.199 0.801 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.179 0.821 40 H 0.186 0.814 41 H 0.205 0.795 42 H 0.201 0.799 43 H 0.096 0.904 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.805 -5.429 28.853 30.379 hybrid contribution -1.403 -0.244 0.208 1.440 sum 6.401 -5.673 29.062 30.294 Atomic orbital electron populations 1.22357 0.97659 1.01491 1.00724 1.20252 0.92601 0.95082 0.84193 0.93281 1.42677 1.79856 1.09537 1.06803 1.18961 1.34373 0.94328 0.87330 0.92671 1.25482 1.02702 1.02441 0.95244 1.69890 1.54897 1.37704 1.01338 0.85450 0.77302 0.80768 0.78483 1.21306 1.22924 1.16449 1.22548 0.96023 1.00319 0.92803 0.89076 1.22553 0.95365 1.04378 0.92643 1.22398 0.86528 1.01635 0.93301 1.48397 1.16860 1.64343 1.04372 1.16919 0.86101 0.77827 0.80655 1.90811 1.27828 1.50022 1.75678 1.23814 1.00200 1.12563 0.97939 1.20256 0.98969 0.96820 0.92225 1.18512 0.92770 1.01033 0.95546 1.22131 0.99691 0.98606 0.93362 1.22676 0.88733 0.95383 1.01025 1.67755 1.33696 1.14922 1.03198 1.22716 0.93735 0.93371 0.92005 1.24751 1.00702 1.08187 1.00795 1.84410 1.02759 1.64916 1.00260 1.22276 0.92264 0.99732 0.85960 0.92815 0.91343 0.94832 0.80066 0.93615 0.89037 0.90265 0.89064 0.89041 0.82080 0.81390 0.79495 0.79921 0.90416 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 9.23 71.98 0.66 -4.39 16 2 C 0.19 6.13 2.40 44.99 0.11 6.24 16 3 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 4 N -0.75 -31.08 4.68 -322.94 -1.51 -32.59 16 5 C -0.22 -11.69 10.41 84.03 0.87 -10.81 16 6 H 0.06 3.28 8.06 -2.91 -0.02 3.26 16 7 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 8 N -0.99 -61.86 13.97 21.65 0.30 -61.56 16 9 Si 0.95 43.23 27.73 68.60 1.90 45.14 16 10 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.24 -9.33 6.52 99.48 0.65 -8.69 16 13 C -0.10 -2.42 2.63 -9.40 -0.02 -2.44 16 14 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 15 C -0.11 -2.50 6.19 31.78 0.20 -2.30 16 16 C 0.08 1.57 5.16 86.73 0.45 2.01 16 17 N -0.61 -13.90 3.33 -815.93 -2.71 -16.61 16 18 C 0.60 15.19 7.83 86.60 0.68 15.87 16 19 O -0.56 -17.90 16.98 -4.12 -0.07 -17.97 16 20 C -0.22 -4.62 6.27 23.62 0.15 -4.47 16 21 C -0.05 -0.92 9.81 21.71 0.21 -0.70 16 22 C -0.06 -1.06 5.91 -21.48 -0.13 -1.18 16 23 C -0.12 -1.40 10.13 22.62 0.23 -1.17 16 24 C 0.07 0.86 11.06 84.11 0.93 1.79 16 25 N -0.49 -7.89 10.34 -196.34 -2.03 -9.92 16 26 C 0.15 2.26 11.24 85.12 0.96 3.22 16 27 C -0.23 -3.70 6.54 23.12 0.15 -3.55 16 28 S 0.21 3.24 18.46 -56.49 -1.04 2.20 16 29 C 0.12 2.84 5.52 86.85 0.48 3.32 16 30 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.07 1.76 7.60 -2.39 -0.02 1.74 16 32 H 0.03 1.21 8.14 -2.38 -0.02 1.20 16 33 H 0.37 14.52 5.66 -92.71 -0.52 13.99 16 34 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.08 1.94 8.04 -2.39 -0.02 1.92 16 37 H 0.09 1.46 6.95 -2.39 -0.02 1.44 16 38 H 0.09 1.44 6.78 -2.38 -0.02 1.42 16 39 H 0.16 2.79 7.96 -2.91 -0.02 2.77 16 40 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 43 H 0.08 1.84 8.03 -2.38 -0.02 1.82 16 44 H 0.08 1.99 8.04 -2.39 -0.02 1.97 16 Total: -1.00 -72.04 372.31 1.67 -70.36 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.44 Total: 22.90 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 6.39 Total: -1.95 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -5.95 Total: -120.68 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.07 Total: -17.97 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.90 Total: 45.14 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.04 Total: 2.20 kcal Total: -72.04 1.67 -70.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672209372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.893 kcal (2) G-P(sol) polarization free energy of solvation -72.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds